Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------ANAC58                                  <---------ZAT2                            <---------ZAT2   <---------ANAC58                            --------->ZAT2 <---------YAB1                            --------->At4g35610                            <---------At4g35610   <---------LBD16                    <------ZmHOX2a(1)      --------->ICU4       --------->ANAC58               <-----             <---------ARR14(2)   --------->ZAT2<---------ARR14(2)      <---------AHL20(2)    -------             --------->ARR14(2)   --------->At4g35610           --------->ANAC58     --------->YAB1   ---------->DOF2 <---------YAB1 <---------At4g35610  <-------GAMYB    <-----------GT1     ---------   gacatcaaagagtcgaatatgaggattgcaagctgcagctagataatgcttatctggggttatctcaagcctatttacatgctgcaattacaaacattaa  6214400                                                                                      --------->At5g28300                                                                                     ----------->GT1                                                                                    --------->ANAC58                                                                       --------->ARR14(2)                                                                       <---------ARR14(2)    --------                     --------->YAB1                                   <------ZmHOX2a(1)     ---------              <---------ICU4                                       --------->YAB1   --------->ANAC58-         --------->AHL20(2)                                      --------->GLK1(2) --------->SPL7   < ----AHL20(2)<---------AHL20(2)                              ----------------->AG<---------SPL7 <---- -->AHL20(2) --------->AHL20(2)                            --------->MYB52(1)  <---------------AtSPL3 >TOE2(3)<---------AHL20(2) <-----------GT1              <---------MYB52(2)    <---------------AtSPL8   tttgtctcagttttattaattactcagaattcacaaaatcaagggagagagagagagaaacaaaccgaatcaggatactgaatggtacggtaacagcgac  6214500                        <---------ANAC58               --------->GLK1(2)               --------->ARR14(2)              --------->ARR14(2)              <---------ARR14(2)              <---------GLK1(2)            --------->LBD16  <---------YAB1          ----------------->AGL1          ----------------->AGL2     <---------At4g35610<---------ANAC58   <---------RAP2.6(2)  <---------ANAC46 ->DEAR3(1)--------->HSFB2a(2) >At4g35610<---------HSFB2a(2)--------->YAB1     --------->YAB1                         <---------YAB1 -------->ARR14(2)    <------MYB83--------->STY1(2)                                     --------->LBD16 ---------ARR14(2)    <------MYB46(1)          --------->ANAC58                     <-----------GT1 -------------AGL1   <---------AtMYB61         --------->ANAC58                   <---------AHL20(2)   cagtttcggcttcccagaatcggatggtgtgatcatagctagccgtagcaagaatcacagaaggctgactcattttcgatcgattttatcccgattgaaa  6214600              --------->ANAC55(2)                                                            --------              <---------ANAC58                                                               <-------              <---------ANAC46                                                              <--------              <---------ANAC55(2)                                                         <------MYB46(1)              <---------ANAC58                                                            <------MYB83        --------->MYB46(3)                                                      --------->STY1(2)        <---------ATHB12                                                        <---------STY1(2)       -------->P                                                               --------->ZAT2       ------>MYB83                                                            --------->ANAC58     <       ------>MYB46(1)            --------->LBD16              --------->YAB1  --------->ANAC46   <--     --------->AtMYB61           --------->HSFB2a(2) <---------DAG2--------->MYB52(1)    <---------MYB46(3)    --------->MYB46(3)          <---------LBD16      <----------DOF2  ------->GAMYB      --------->MYB46(2)   >>>>>>>>>>MYB80      <---------At4g35610 <---------MYB52(2)--------->ICU4   --------->ANAC58<-----  <-----------GT1  <---------YAB1<---------HSFB2a(2)<---------DAG2 ----------->RAV1(1)   <---------AtMYB61   tattaaaccaaccatttcgtgatttttgctgattcccagaaaacaaacaaacccccttttcgaaataatcaacagaagaacaagctagggtttggtgatt  6214700                                                                                           *TSS     <                                                                                           <---------AHL20(1)                                 <---------ZAT14                                           --------->AHL20(2)                            <---------ZAT14                                                --------->AHL20(1)                            --------->ZAT14                                             --------->ATHB51  <------ZmHOX2a(2)         <-------TEIL                                                <--------HAHB4 ->ATHB12                  --------->ALFIN1                                            --------->ICU4 --MYB46(3)             --------->DAG2                                         <----------DOF2  ----- -YAB1                  <---------------AtSPL8                   ----------->GT1     --------->YAB1<- ------ZmHOX2a(1)      --------->DAG2 --------->At5g28300 >>>>>>>>>>GT-3b   ------>MYB83<---------ICU4 -------TOE2(3)       ---------->DOF2----------->GT1   ----------->GT1      ------>MYB46(1)<---------AHL20(2) ----WOX13(1)   ---------->DOF2  --------->ZAT14      >>>>>>>>>TBF1    <-----------GT1 <---------YAB1   gaggatcaaaaaacaggggaaagaaaaaggtgcagagaactgtaaattgaagagaagaagaaaaatagggtttttaccaagcttttctcataattaatta  6214800      <------MYB46(1)      <------MYB83           <------------CBF     <---------AtMYB61   --------->ARR11(3)               <---------ANAC55(2)    <--------P           <---------ARR11(3)       --------->ANAC58  <------NtERF2         <---------CCA1(2)         --------->ANAC58                           -------- --------->LBD16     <---------AHL20(1)           --------->ANAC46                     ----------->GT1 ---------LBD16      --------->AHL20(1)         --------->CCA1(2)                     --------->DAG2 ----->DOF2         --------->AHL20(2)    --------->AHL20(2)        <----------DOF2  ---------->DOF2 --------LBD16  ----------->TBP           <---------AHL20(2) ---------->DOF2      <---------YAB1-----   acgcggggaggttttagtataaatatatatctattggggtttatttaaatatacgaaaataagtaaagggctattttgttatttatgaaaagtaataaga  6214900                                                                                         --------->ARR14(2)                                                                                        --------->At4g35610                                                                                        <---------At4g35610                                                                                        --------->ATERF1(1)                                                                                        <------NtERF2                                                                                       <<<<<<<<<AtERF-2                                                                                       <<<<<<<<<AtERF-1                                                                                       <<<<<<<<<AtERF-4                                                                                       <<<<<<<<<AtERF-3                                                                                       <<<<<<<<<AtERF-5                                                                                       <---------ERF1                                                                                       ------>NtERF2                                                                                       <---------ATERF1(1)                                                                                       <---------RAP2.3(1)                                                                                       <---------MYB46(3)                                                                                      <---------ANAC46                                                                                      *TSS                                                                                      <---------DEAR3(1)                                                                                      <---------RAP2.6(2)                                                                               ------------>CBF                                                                              ----------->RAV1(1)   <                                                                            <------NtERF2<---------ARR14(2)                                                                          --------->ANAC58    -------                                ----------->HVH21                         --------->ANAC58  ---------                            <---------ZAT14   --------->At4g35610        --------->RAP2.6(3)---------   ---------->DOF2          --------->ZAT14   ----------->RAV1(2)<----------DOF2      <---------RAP2.3(2) ->YAB1             <---------ZAT18        --------->RAP2.6(3) --------->HSFC1(2)     <---------RAP2.3(3) ---->AHL20(2)      --------->ZAT18       --------->MYB52(1)   <---------HSFC1(2)    --------->RAP2.6(3)   aaatataaagaacaactatttgttcactacttcactgacagacataacggctgagactccttggaagcttttagagacggcaacaatggcggctacgaaa  6215000                                                     <---------ANAC46                                                     <------NtERF2                                                 <-----------HVH21                                                --------->DEAR3(1)                                               --------->MYB46(3)                                               --------->DEAR3(2)                  --------->ATERF1(1)   --------->ATHB12                  <------NtERF2        <------NtERF2<---------LBD16                 ------>NtERF2         <---------MYB52(1) --------->HSFB2a(2)                  <---------RAP2.6(3) <---------HSFB2a(2)                  <-----------HVH21<------NtERF2           --------->ANAC55(2) ---------LBD16  <---------RAP2.6(3) --------->RAP2.6(2)           <---------GLK1(1) --->DOF2       --------->DEAR3(1)   --------->RAP2.3(2)       --------->MYB59 <---------ANAC55(2) >ANAC58        ----------->HVH21    --------->RAP2.3(3)  <------ZmHOX2a(1)<-----------HVH21        < >ANAC58       --------->DEAR3(2)  <---------At4g35610--------->LBD16     <---------ETT(2)      <----   gctctggaatttgttttgccgacgggcttcttcatccagccgtcattgaaccgtcgcggaggagttaggctctccgtcgtcaagtgttccatttcttcag  6215100                 <---------At4g35610                <---------ARR14(2)                --------->ARR14(2)                <---------ARR14(2)                ------->TEIL                      --------->ARR14(2)             --------->DEAR3(1)                 --------->LBD16            --------->ANAC58                   --------->ANAC55(2)            --------->ANAC58                   <---------ANAC55(1)            ----------------->AGL1             <---------ANAC58            <-----------------AGL1             <---------ANAC58                       <-------TEIL            <------NtERF2                      <---------ANAC55(2)                   --------->ARR14(1)         <---------ABI4(2)                     <---------ANAC46                     <---------GLK1(2)        --------->ANAC58                      <---------LBD16                       --------->ARR11(1)        --------->ANAC58           <---------GLK1(1)                           <----------DOF2        --------->ANAC46           --------->GLK1(1)       --------->ZAT2   <---------ARR11(3)     <---------REM1(2)            --------->ARR14(2)       <---------ZAT2 --------->LBD16     --------->ZAT14      ------->GAMYB     <---------ARR14(2)           <---------HSFB2a(2)    <---- -----------------AGL1 <---------DOF5.7(2)  --------->ARR14(2)           --------->HSFB2a(2)   <----- -------HVH21<---------ALFIN1     <---------ARR14(2)   <-----------GT1  <---------LBD16        <-----   tcacctctacaggcaccgcatctggtaacgctcgccgatttccccatttccgtattttcacagcttgattttttcccagaactttagattcgaattggct  6215200                                                                   <---------ICU4                                                    --------->ATHB12                                       <---------ANAC46            --------->YAB1                       <---------YAB1  <---------ANAC58           <---------ATHB12                   <---------AHL20(2)  <---------ANAC55(1)   --------->TOE2(3) ------DOF2     ------->TEIL           <---------ANAC58 <---------ANAC58 ----ANAC58  <---------ANAC46     <---------At4g35610   <---------ANAC58 ----ANAC58  <---------ANAC55(2)  --------->At4g35610  --------------->AtSPL8           <----------DOF2   ttcgattcaaatgttatgtatatatatgattttttcagattacttgtaggctcttgattcgtgccttaatcatcgttttggttattgtttcttttagttt  6215300  Previous    Next  AGI:  At3g18140.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G22040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23544.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 6212602    to: 6214791    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18145.1    Description:  pseudogene, similar to putative carbamoyl phosphate synthase small subunit, blastp match of 89% identity and 4.4e-115 P-value to GP|21535793|emb|CAC85725.1||AJ319873 putative carbamoyl phosphate synthase small subunit {Nicotiana tabacum} Range:  from: 6214986    to: 6217282    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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