Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       --------->MYB52(1)                                                                    ------->GAMYB                                  --------->At4g35610              --------->MYB46(3)       --------->ANAC46           <---------At4g35610              <---------MYB52(2) -->MYB46(1)                      ----------->RAV1(2)          --------->At4g35610 -->MYB83                   <------ZmHOX2a(1)                 --------->ANAC46               -------- ---->MYB52(1)        <---------ICU4                 <---------HSFB2a(2) --------->ATHB12    <------- -WRKY18(1)          --------->ICU4                  --------->HSFB2a(2)--------->ICU4      <--------   actgatttcacgacgaagcagtaatcagtaggagtcatctgaacaagacgagcatcgagaatatcagcaacgaactgattagatttcaagcttagaatct  6209300                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                           ----------                                                                                          <---------DEAR3(1)                                                                                          <---------TGA1a                                                                                          --------->O2                                                                                          <---------O2                                                                                          ===========                                                                                          ===========                                                                                          --------->TGA1a                                                    <---------DAG2                        --------->ANAC46                                                    <----------DOF2                      ------>NtERF2                                                    ================================================bZIP_DOF                                                 <---------ALFIN1                       --------->DEAR3(1)                                               ------->GAMYB                            <---------ALFIN1  <-----------HVH21                           --------->ANAC58                         <---------REM1(2) --------->ANAC46                    --------->TOE2(3)                                 <------NtERF2 ->GLK1(2)                           --------->TOE1(3)                               --------->ANAC58 ----ARR10               --------->ZAT14      --------->ANAC58             ------>ZmHOX2a(1) <------- -GLK1(2)    <-----------GT1   <----------DOF2--------->ANAC46    --------->ZAT14    --------->ANAC58   tatccgtcagaaatttgactctctctctccagtctttagccttaatcaacgccactttattcatcttcttcactctccttctccgagtcgccacggcggt  6209400                                                                  --------->LBD16                                                                 <---------ATERF1(2)                                                                 --------->TOE1(2)                                                                 --------->ATERF1(2)                                                                --------->DEAR3(2)                                                             <---------ZAT14                                                             --------->ZAT14                                                             <---------SPL7                                                      --------->ARR14(2)      <---------ANAC58                                <---------ARR14(2)      <---------ANAC58      <------NtERF2        --------->At4g35610 --GAMYB                   --------->ANAC58      <---------At4g35610 ---MYB46(3)           --------->LBD16           ----------->RAV1(2)<---------DEAR3(1)   ---------->DOF2 ---DEAR3(2)          <---------ANAC46      <---------bZIP60(1) <---------LBD16   --------->LBD16 -->AtMYB77          <---------LBD16      ------>NtERF2     --------->ALFIN1    <---------LBD16 ==MYC_MYB<----------DOF2  --------->ANAC58 --------->bZIP60(1)------->TEIL    --------->MYB52(1) ====================bZIP_DOF            --------->ANAC46 --------->LBD16     <---------ARR14(2) --DEAR3(1)        ------>ZmHOX2a(1) --------->DEAR3(2) <---------LBD16       --------->ARR14(2)   ttcatctttcgtcttttgctcctcgcgggaggcaattgaatcgacgacatcacctgaatccggtgtaccggcgatgggagaaaccggagaagaaagagtt  6209500                                                      <------NtERF2                                                     ------>NtERF2                                                     --------->LBD16                                                     <---------MYB46(3)                                                    <---------ANAC46                                                   <---------LBD16                                                   <------NtERF2                                                  <---------RAP2.3(1)                                                  <---------DEAR4(2)                                                 <---------DEAR3(1)                                                --------->SPL7                                    <-----------RAV1(1)    --------->GLK1(2)                               <-------TEIL     <---------ORA47(1)                                <--                         --------->LBD16      ----------->HVH21                         >>>>>>>>>TBF1             --------->YAB1 --------->GLK1(1) <---------SPL7                     --------->HSFB2a(2)     --------->ALFIN1  <---------LBD16      --------->At4g35610                  <---------HSFB2a(2)     <---------ANAC46 --------->MYB52(1)    <---------At4g35610                 <---------LBD16  <---   tgtgaaggtgtggaatcataaatctcacggagattcaaatgtggccatcggacggcgggagaagctcgactgtaagtgaatttctgggaagaagaagtag  6209600                                                                                        --------->RAP2.6(2)                                                                                        ------->GAMYB                                                                                        --------->ANAC46                                                                                        --------->DEAR3(1)                                                                                       --------->MYB46(3)                                                 --------->MYB52(1)                    --------->DEAR3(2)                                               <------NtERF2                         --------->ARR14(2)                                              ------>NtERF2                          <---------ARR14(2)             <---------TOE1(2)               <---------ANAC58                 <-------PIF5            <---------ANAC58                 <---------ANAC46                 ------->PIF5            <---------ANAC58     <------ZmHOX2a(1)       --------->DAG2      ----------->RAV1(2) <---------At4g35610           <---------TOE1(2)<---------SPL7    --------->DAG2    <---------ARR14(2) --------->At4g35610          <---------LBD16<---------ANAC58    ---------->DOF2<---------ZAT14 -------At4g35610     <----------DOF2 <---------YAB1    ---------->DOF2---------->DOF2 <------------AtMYB77 --------RAV1(1)      --------->TOE2(3)   --------->ALFIN1     <------ZmHOX2a(1)--------->ZAT14   ---   tgctgctgatgttcgcttgttcatctttaatctcaggattaagagtggcgcgaacggataaagcaggaaaagctaaagcccctgcagaaaccgccattaa  6209700                                                                                    ------>ZmHOX2a(1)                                                                                    --------->LBD16                                                                                   --------->TOE1(2)                                                                                --------->ARR14(2)                                                                                <---------ARR14(2)                                   <---------MYB52(1)                        <---------TOE1(3)               <-------TEIL  <---------SPL7                                  <---------TOE2(3)            --------->ZAT2 <---------------AtSPL3                       <----------DOF2            --------->At4g35610   <-------GAMYB                      --------->ARR11(3)            <---------At4g35610  ----------->GT1                     <---------ARR11(3)  --------->DAG2            <---------ZAT2<-------GAMYB                 ---------->DOF2------>ZmHOX2a(2)---------->DOF2 ------>ARR11(3)   --------->AHL20(2) ---------->DOF2 ----------->HVH21====================HOX2a_HOX2a   tgtcttcttctctcagcttcataaatttcgttgtaccgttaaaagatgagaagcgagtgaaagagaagagtgatcttttaaggttcctgagaaagtgaga  6209800                              <---------MYB111(2)                              <---------MYB55(2)                              <---------MYB52(2)                              --------->MYB46(3)                        <-----------GT1                    <---------RVE1(1)                                                  --------->ANAC55(2)                   <---------GLK1(2)                                                   <---------ANAC46                   --------->ARR11(3)                                                  <---------ANAC58                   <---------ARR11(3)                                                  <---------ANAC58                 <---------TOE2(3)<---------ALFIN1         --------->ANAC58     ---------->DOF2            ------>NtERF2    ------>MYB83                  --------->ANAC58   --------->ANAC58            <---------RAP2.6(3)------->GAMYB          ----------->HVH21       --------->ANAC58   ----           <---------ANAC46  ------>MYB46(1)     <-----------GT1 <---------AHL20(2)    ----------->GT1   aacaaactccttgccgtctaagatttttaccaacaaacaccttgctgtttttaactgtgacaaggattttatgaagcgagacgaaagttgcgttataaga  6209900                                       ----------->HVH21                                       <---------MYB52(1)                                     --------->ANAC55(2)                                     <---------ANAC58                                     <---------ANAC55(2)                                     <---------ANAC58                                  --------->GLK1(2)                                  --------->ARR14(2)                              --------->TOE2(3)                      <---------AHL20(2)                              ------->GAMYB<---------DAG2         <---------ICU4                              --------->YAB1                     <---------YAB1                             --------->MYB46(3)                  --------->ICU4      <---------TOE2(3)     --------->ANAC58   <---------YAB1  --------->YAB1                    <---     ---------->DOF2        --------->ANAC58<----------DOF2   <---------YAB1                   ------  --------->YAB1    --------->AHL20(2)--------->LBD16       --------->YAB1                    <------ -------->CBF      ----------->TBP<---------ARR14(2) <---------ANAC46--------->AHL20(2)       -------   ccaattttaaagatgaagaatataaaatgcaaccaaaatccgtgaccttttgatagagtgtatgatgataattaaacaaaatttgacaaaatacaagatt  6210000                                                                    ---------->DOF2                                                                <---------At4g35610                                                                <---------ZAT2                                                        <---------GLK1(1) --------GT1                             ----------->RAV1(1)    --------->ZAT2 --->CCA1(2)           ----------->GT1  ----------->HVH21       --------->At4g35610 ---ARR11(3)       --------->DAG2      --------->At4g35610   ------>ZmHOX2a(1) -->ARR11(3)  ----------->GT1    ---------->DOF2        --------->GLK1(1)--------->ALFIN1   tacatgagagccagtttggaaaaattggataaactaaaagcagcgacaatgttgagagagttcctcagcttaaagttgtggccatttgatttgcgctaga  6210100                            ===============================bZIP_DOF                     <---------MYB46(3)                     <---------DEAR3(1)                    --------->ALFIN1                  --------->TGA1a                  <---------ANAC46                  --------->ANAC55(2)                  <---------ANAC58                  =====================bZIP_DOF                  <---------ANAC55(2)                  <---------ANAC58                  --------->O2                  <---------O2                  <---------TGA1a                  <---------ANAC55(1)              <---------CCA1(2)                 <-------TEIL                    --------->TGA1a                --------->CCA1(2)                =======================bZIP_DOF               --------->ARR14(2)                --------->O2                     -------------------               --------->ARR11(1)               --------->LBD16            --------->ANAC58               <---------ARR14(2)         <---------ZAT18                  --------->ANAC46               <---------GLK1(2)    ----------------------->TaNAC69(2)     --------->ANAC58 ------>ZmHOX2a(1)     --------->TOE1(2)      ---------->DOF2   <---------LBD16<----------DOF2      <----------DOF2   -   cttggaacataagaacagatacgtgggtgataaaggctatgtagcgctcccgcgtctctgtgtctttatccaaaaacacgacaactttcttctcctcgtc  6210200  Previous    Next  AGI:  At3g18110.1    Description:  EMB1270 (EMBRYO DEFECTIVE 1270). similar to PGR3 (PROTON GRADIENT REGULATION 3) [Arabidopsis thaliana] (TAIR:AT4G31850.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76112.1); similar to hypothetical protein OsJ_019636 [Oryza sativa (japonica cultivar-group)] (GB:EAZ36153.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62227.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 6204810    to: 6209697    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18120.1    Description:  F-box family protein-related. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G17620.1); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 6210096    to: 6210578    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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