Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->ETT(2)--------->ATHB12                                                                ------>ZmHOX2a(1)     --------->MYB46(3)                            <---------HSFB2a(2)          --------->ZAT14    <---------At4g35610 -->ZAT6            <-----------HVH21<---------ALFIN1   ------>ZmHOX2a(1)   --------->At4g35610------ >MYB52(1) <------ZmHOX2a(1)--------->HSFB2a(2)   <---------ALFIN1     --------->WRKY38(1)    -------   taaaacatcgtaaggacatacctgtcatttccacaagtgccactcgatttcgccactcctacagtcctactcgtcgactgctcgcttaaccattgaaaaa  6194600                                                                       --------->DOF5.7(2)                                               <---------ARR11(1)    <---------ANAC46                                               ------->TEIL         <------NtERF2                                            --------->ANAC46       ------>NtERF2                                           <---------LBD16        --------->DEAR3(1)                                     --------->GLK1(2)            ----------->HVH21                                     ------->TEIL                 <---------DEAR3(1)                                     <---------ARR14(2)          <------NtERF2                                     --------->ARR14(2)         <---------ATERF1(1)            <-----                                    <---------CCA1(2)           ------>NtERF2                  <-----                               <---------DEAR3(1)               --------->LBD16 ------>NtERF2  ------                         --------->O2<-----------ARR10         --------->LBD16 --------->DEAR3(1)                  <---------YAB1    <---------ARR14(1)         <---------LBD16 ------->GAMYB  <------    --------->MYB52(1)   <---------O2<---------ARR11(1)   <---------GLK1(1)   --------->MYB46(3) --->DAG2      <---------YAB1  --------->ANAC46--------->ARR14(2)--------->RAP2.3(1)   <-----------GT1 --->DOF2   <---------YAB1    <---------LBD16--------->LBD16  <---------LBD16 --------->DEAR3(2)   gtgagccaagggttttgattattttcgacgtctacggcgaatctctccgcatcttcatcgatttcccggcgacgtttactaccgccgttttactcaatcg  6194700       --------->ANAC58                                                           <----------DOF2       --------->ANAC58                                                     <---------KAN4(2)  --------->ZAT2                                                            <---------ARR14(2)  <---------ZAT2                                                            ---------->TaMYB80  --------->At4g35610                                                       --------->ARR14(2)  <---------At4g35610                                                  --------->LBD16 ------>NtERF2        <---------------AGL15                           <---------ANAC46 ----ANAC58          --------------->AGL15                            <---------HSFB2a(2) ----ANAC58          ----------------->AGL3                           --------->HSFB2a(2)   ------>ZmHOX2a(1) --->YAB1        <---------SPL7   <-----------GT1 <----------DOF2    <---------LBD16    <-----------GT1 ---ATHB12     --------------->AtSPL8  <----------DOF2   --------->ATHB12   --------->GLK1(2)   <----   tgccagcttaagcaatcgaggtacccattttaggtgttacgctttgattctgcttttaagcattggacaattccggagaatatgctttagtttcctctct  6194800                                                     --------->ATHB12                 >>>>>>>ZML2                         <---------ICU4                 --------->HSFB2a(2)  <---------ANAC58                            <---------ANAC46         --------->ARR14(1)           <---------ANAC55(1)            <---------AtLEC2        --------->ARR11(1)            <---------ANAC58     <---------WOX13(1)     <---------ANAC58       --------->ATHB12      <---------MYB46(3)     --------->ICU4   --------->YAB1     <-------TEIL<      --------->ICU4       <---------GLK1(2)        <---------YAB1  <-------TEIL  <---------ANAC58  <      <---------YAB1     --------->ICU4           --------->YAB1   --------->AtLEC2  <---------MYB46(3) ------DOF2      <---------HSFB2a(2)  <---------ANAC46   --------->ATHB12    ------->TEIL          <-   tttggagaatgattcggttctaggggaaagattgttgatttcgtgtttgtattcatcattgattgaaacatgcatgatgcattttcgtggttcatggttt  6194900                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------YAB1    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC46           <------------------------ANAC81 ---------LBD16          <----------DOF2 ---------At5g28300     <------------------------ANAC81                <---------TOE2(3) ----------GT1    <-----------GT1<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<------------CBF  --------->CCA1(2)   ttcacggcttcttatcattttctctgtcttttttttttttttttttttttttttttttgtttcagtgtgtattgaggtataccagagatagacataaatg  6195000                                 =========================HOX2a_HOX2a                               <---------At4g35610                                            <------                               --------->At4g35610                                         <---------ARR11(3)                       ----------->RAV1(2)                                                --------->REM1(1)                       --------->ZAT2                                                   ----------->RAV1(1)                       <---------At4g35610                                          --------->TOE1(2)                       --------->At4g35610                                         --------->At4g35610                       <---------ZAT2                                              --------->ZAT2                      <-----------RAV1(1)     <---------ZAT2                     --------->DAG2   ------->TEIL      --------->ZAT18          --------->ZAT2  <-----------GT1   ---------->DOF2   <--   *TSS        <------ZmHOX2a(2) <------ZmHOX2a(2) <------ZmHOX2a(1)  <----------DOF2  ----------->HVH21   agatggatgttgacgagatcgagtctgctgggcagatcaatatttctgagctaggagaaagttttctccagactttctgcaaaaaagctgcgacatcttt  6195100                                       --------->REM1(1)                                          <--                           --------->At4g35610                                    <----------DOF2 ---                           <---------At4g35610                                    ------>ZmHOX2a(1) ----DOF2               <---------At4g35610     --------->ATHB12    --------->GLK1(2)       --------- --------DOF2      --------->ANAC46  ------>ZmHOX2a(1)             <---------GLK1(2)   ----------->HVH21   ctttgaagagtttggacttataagtcatcagcttaactcctacaacttcttcattgaacacgggcttcagaatgtgtttgagtcctttggtgacattctt  6195200                                                     ----------->GT1                                               <---------ANAC55(2)                                               --------->ANAC46                                               --------->ANAC58              ----------->GT1                  --------->ANAC55(2)        <----------DOF2                        --------->ANAC58   --------->HSFB2a(1)                        <-------TEIL  >>>>>>>>>CBP60g   --------->HSFC1(2)                        --------->ARR14(1)   <---------HSFC1(2)                        --------->CCA1(2)   <---------HSFB2a(1)                      --------->ARR11(1)   --------->DEAR3(2)                       <---------ARR14(2) --------->TCP20                            --------->ARR14(2) --------->ARR14(2)                        <---------GLK1(1)>>>>>>>>>SARD1 <---------ARR14(2)             <---------DEAR3(1)   ------->GAMYB --------->DAG2 -------HSFB2a(2)   ---------->DOF2  <-------GAMYB--------->MYB52(1)                               <- ------>HSFB2a(2)  --------->ICU4   <---------MYB46(3)--------->At5g28300 <----------DOF2       <---- >GLK1(2)    <---------TOE2(3)<------ZmHOX2a(1)--------->ANAC55(1)---------->DOF2            <-------   gtggaaccgtcttttgatgtaataaagaagaaggatggcgattggagatacgcaacggtgaaatttggaaaagtcactttggagaagcctacattctttt  6195300                                                                   ---------->DOF2                                                                 <------ZmHOX2a(2)                 -- ----------->HVH21             --------->AtLEC2              --------->ANAC58                    <--- --------At4g35610           <---------ANAC58                --------->ANAC58          ----------->GT1 -----LBD16<---------ANAC58  <---------ANAC58             <---------ZAT2              <---------TOE1(3) ---DOF2   <---------ANAC58  <---------ANAC46             --------->ZAT2              <---------TOE2(3)   cggatgacaaggagcttgagtttctcccatggcatgcaggcttcagaacatgacatactcagcaaggatcaaagtcaatgcccaagttgaggtaactaaa  6195400                     --------->ANAC55(2)            ---------->ID1                       <---------GLK1(1)        <----------DOF2             --------->ARR14(2)    <---------ANAC58     --------->GLK1(2)              <---------ARR14(2)    <---------ANAC58     <---------ARR11(3)    <---------ANAC58      --------->GLK1(1)     --------->ARR11(3)    <---------ANAC58    --------->ATHB12         ---------->DOF2 ------->MYB52(1)    <---------ANAC55(2)       <---------ICU4          ---------->DOF2     <--------- ------MYB52(2)    --------->AHL20(2)     <---------YAB1  <---------ANAC46       --------->ZAT14   ctaacaaaatctttgtcgaaattaagtaagcttgtctggatttgatgaatgatttcccttgcttgaaaactcagaaaggccagttaactatcactttcta  6195500  Previous    Next  AGI:  At3g18090.1    Description:  NRPD2b (nuclear RNA polymerase D 2b); DNA binding / DNA-directed RNA polymerase. similar to NRPD2a (NUCLEAR RNA POLYMERASE D 2A), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT3G23780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44343.1); similar to RNA polymerase IV second largest subunit [Rhododendron macrophyllum] (GB:AAY68198.1); similar to RNA polymerase IV second largest subunit [Zea mays] (GB:AAY45706.1); contains InterPro domain RNA polymerase, beta subunit, protrusion; (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 3; (InterPro:IPR007645); contains InterPro doma Range:  from: 6195003    to: 6200243    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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