Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------LBD16              ------>ZmHOX2a(2)             ======================HOX2a_HOX2a             <------ZmHOX2a(2)             <---------GLK1(1)            <---------AGP1            <---------ARR11(3)           --------->RVE1(1)       ---------->ID1                                            <-------        ---------->DOF2            <---------CCA1(2)                                   <---------MYB52(1)     --------->YAB1         ------>ZmHOX2a(1)                                        <---------ANAC58     --------->AHL20(2)     <---------CCA1(2)                                        <---------ANAC46 -------->GT1--------->GLK1(1) <---------ANAC58                                --------->ARR14(2) ------>ANAC55(2)      --------->ANAC58     ---------->DOF2                    <---------ARR14(2) -------ANAC55(2)      --------->ANAC58<----------DOF2    <----------DOF2      ------->TEIL  <------- -------ANAC46=====================HOX2a_HOX2a --------->HSFC1(2)             <---------CCA1(2)------ ----->HVH21--------->ARR11(3) <---------ANAC58<---------HSFC1(2)   <----------DOF2  <---------ANAC58   acgtaaattataaagatctctggacaagtcctatcttgtctctttggaaagcttctactacttttgaaggctttttttgtgaatcttccgtttggccgtg  6186900                                                                                               <-----                                                                                              <------                                                                                              -------                                                                                   <------ZmHOX2a(2)                                                                                  --------->ARR11(3)                                         <----------DOF2                          --------->ARR14(2)                                      <---------ARR11(1)                          <---------ARR14(2)         <---------ANAC46             --------->ARR14(2)                          <---------ARR14(3)         <---------ANAC58             --------->ARR11(3)                          --------->AGP1       <---------ANAC46               <---------ARR14(2)                          <---------ARR11(3) --------->ALFIN1   <------------------------ANAC81                               --------->ARR14(3) --ANAC58<---------ANAC58             <---------ARR11(3)                         --------->GLK1(1) --ANAC58--------->ALFIN1            <---------CCA1(2)             <---------AtMYB61------>ZmHOX2a(2) --->ALFIN1        <---------MYB52(1)<---------GLK1(1)  ------->TEIL            ----------->ARR10<---   gctgtgttgatgtgtgtgtctgtttttttttttgtctgcatatcttttgtcaaaaatgaatgctctgttttggtctgaaactgagatcttgagtcagatt  6187000         --------->YAB1        <---------YAB1      <---------ICU4     --------->ICU4                                          <---------YAB1   --------->YAB1                                          --------->YAB1 <-----------GT1                                           <--------ATHB1 ----RVE1(1)                                              --------->ICU4           ---------->ID1 ---GLK1(2)                                           ------------>CBF      <---------AHL20(1) -->ARR11(3)                                    <----------DOF2             <---------AHL20(2) ------AHL20(2)                          <------------CBF <---------ATHB12 --------->YAB1     -------   ttttttcattatcagaagattactgatacagaatgggacttgagattgtgctttctctcaatgatttttgggctctataatatttgttcttcttacaaaa  6187100                                                                                             <-------                                                                                          <---------ICU4                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(2)                                        --------->AHL20(2)                               --------->ICU4                                        <---------AHL20(2)                               <---------ATHB51                                       <---------AHL20(2)                             <---------AHL20(2)                                       <---------AHL20(1)          <---------DAG2 ----------->GT1                                    --------->WOX13(1)             --------->TOE1(3) <---------AHL20(2)                             --------->ARR11(3)                  -------->P       --------->ATHB12                             <---------ARR11(3)         ----------->GT1           -------->HAHB4                           ----------->ARR10  <---------At4g35610------->TEIL    <---------YAB1                          <------ZmHOX2a(1)<---------AHL20(2)   <-----------GT1  --------->ICU4             --------->At4g35610  ------------>CBF ------------>CBF--------->TOE2(3) --------->AHL20(2) --->DOF2  <---------------------WRI1  --------->AHL20(2)   --------->WOX13(1) --------->YAB1--------   gttgttttctgaagtagatgaaaacagaggagatttttcaattaatttatctgatcaatagttaatcaaccttattaacaaaaatgattaaataattaat  6187200                                                         --------->ANAC46                                                       <-----------GT1   --------->GLK1(2)                                --------->ANAC58  --------->ICU4        <---------GLK1(2)                                <---------ALFIN1  <---------YAB1     <---------ALFIN1    --------->At4g35610                                --------->ANAC58--------->YAB1    <---------ZAT18        <---------At4g35610     <---------YAB1 --------->ANAC58       ------>ZmHOX2a(1)  <---------ALFIN1         --------->ZAT18 --AHL20(2)         --------->ANAC58     ------>ZmHOX2a(2)   --------->LBD16 <-----------HVH21 ->AHL20(2)    ----------->RAV1(2) <------------CBF<---------ICU4 --------->PCF2       <---------ZAT18   ctcgcttataattctaagcctgaagcaagaagacacacattgatcctcgttcataattcactccccagtccccacattctgtcccatagtgagcttcaca  6187300                                                              <-----------HVH21                                                              ------>NtERF2                                                             --------->DEAR3(1)                                                            <------NtERF2                                                            --------->ATERF1(1)                                                           <---------ATERF1(1)                                                           ------>NtERF2                                                          --------->DEAR3(1)                                                          --------->ANAC58                                                          --------->ANAC58                                                        <---------ATERF1(1)                                                       ----------->HVH21                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                     --------->LBD16                                                   --------->SPL7                                                 <---------SPL7                                                 ------>NtERF2<---------SPL7                                                 <-----------HVH21                                               <------NtERF2--------->RAP2.3(1)                                               --------->ATERF1(1)                    --------->MYB52(1)                                               --------->RAP2.3(1)             <---------DEAR3(1)                                        ----------->ARR10--------->ATERF1(1)--------->ATERF1(2)                                   ------>NtERF2 <---------RAP2.6(3)        --------->DEAR3(1)                                  <---------DEAR3(1)--------->HSFB2a(2)     <---------ATERF1(2)                       <---------At4g35610    <---------RAP2.3(1)          --------->DEAR3(2)               ------>ZmHOX2a(1) <---------LBD16--------->DEAR3(1)         --------->ATERF1(1)              <---------ALFIN1  <---------ATERF1(1)<---------LBD16         <------NtERF2   ----------            ------>ZmHOX2a(1)--------->ANAC46 <---------ATERF1(1)         --------->MYB52(1)        <-----------GT1--------->At4g35610   <---------DEAR3(1)           ------>NtERF2    ==========   <----------DOF2------>ZmHOX2a(1)--------->LBD16--------->SPL1(1)       <---------ATERF1(1)   tgtttctttttctcctcctcctctctgcttcccgctccggcgaagagtcgccgtccggagacgccgtcccattggccaccggcggtcttaacagaaagag  6187400                                  <---------At4g35610                                  --------->At4g35610                                  <---------ZAT2                                  --------->ZAT2                               --------->TGA2(2)                              <-----------TGA1                              <-----------HVH21                             --------->TGA1a                             <<<<<<<<<<AtbZIP1                             --------->bZIP60(2)                             --------->ANAC58                             ==================MYC_MYB                             --------->ANAC46                             --------->bZIP60(1)                             --------->ANAC58                             --------->O2                             <---------O2                             <---------bZIP60(1)                        --------->ANAC46                        --------->DEAR3(1)                        --------->ANAC58                        --------->RAP2.6(2)                        --------->ANAC58                        ------->GAMYB -------->P                        ===============MYC_MYB                       ================MYC_MYB                       --------->DEAR3(2)                       <------------AtMYB77                       --------->MYB46(3)         --------->ARR14(2)  <---------TGA1a         <---------ARR14(2) ------>NtERF2         <---------GLK1(2) <---------ALFIN1                ------>MYB83   --------->LBD16    <---------ATERF1(1)                  ------>MYB46(1)      <---------ATHB12  <---------HSFB2a(2)<---------ARR14(2)                  --------->MYB46(3)    --------->ANAC58  --------->HSFB2a(2)--------->ARR14(2)                  <---------MYB55(2)    --------->ANAC46 <---------LBD16 <---------LBD16<-----------bZIP910(2) --------->PCF2 <---------ANAC58 >DOF2  <------ZmHOX2a(1)<-----------HVH21 <-----------HVH21          <---------ANAC58     <-------TEIL ======================================bZIP_DOF   <---------------------WRI1   --------->ANAC58   ttttccggaaggattcttgttcggaaccgccacgtcagcttaccaggtcgaaggcgagacccaccaagatggtcgtggtccaagcatttgggatgcattc  6187500                                                                --------->YAB1                                                                <--------HAHB4                                                                --------->ATHB12                                                                <---------ICU4                                                               <---------ATHB12         ----------->GT1        --------->LBD16          <-----------GT1             --------->WOX13(1)     --------->ATHB12        ------>ZmHOX2a(1)--------->WOX13(1)    <---------AHL20(2)                  <---------YAB1    --------->GLK1(2)<---------ICU4     <-----------GT1  ----------->GT1          <<<<<<<<<<<<<<<<<LFY   <---------GLK1(2)--------->ICU4 <---------YAB1    --------->ATHB12             <---------At5g28300 --------->ICU4   --------->YAB1 --------->YAB1--------->AHL20(2)                <-----------GT1   gtcaagattcctggttaatctcataatcaatctaattacaattcactaattaaactgattagttaatcatttcgatttcttatttaccattggtaaaaaa  6187600                                        <---------ZAT14                                        --------->WRKY12                                        <---------ZAT18                                       --------->ALFIN1                                  <<<<<<<<<<<<<<<<<LFY                          <---------ZAT2--------->ZAT14                                        <-----                          --------->ZAT14         --------->YAB1                               ------                          --------->At4g35610    <---------YAB1 <-------TEIL                  <------                          --------->ZAT2--------->WRKY38(1) --------->ANAC46              ------>ZmHOX2a(1)         <---------WOX13(1)       --------->MYB52(1) <---------ICU4                   ---------->ID1      <---------YAB1      <---------At4g35610   <---------ARR11(3)               <----------DOF2    <--------P            <---------ZAT14       --------->ARR11(3)       --------->ZAT6  --------->TOE2(3)   acacaggtaagattgccaacaatgccactgctgagataacagtggaccaatatcatcgttacaaggtacttcttgtcactaatcttttgttcctaaatca  6187700                                 <---------YAB1                                <---------AHL20(1)                                <---------AHL20(2)                                --------->AHL20(2)                    --------->ALFIN1        <---------AHL20(2)     --------->YAB1      <---------AHL20(2)      <---------AHL20(2)     <---------AHL20(1) <-------GAMYB          <---------AtMYB61     --------->ARR11(3)----------->GT1 <-------TEIL                                              ----     <---------ARR11(3)<---------MYB46(3)    ------>ZmHOX2a(1)           <------ZmHOX2a(1)    <------   ------->TEIL   <---------ANAC58     ------->TEIL                   <---------LBD16         ------- ----ICU4         <---------ANAC58 <---------------AtSPL8      <-----------GT1     <---------ARR14(2) --->YAB1         <---------ANAC46 --------------->AtSPL8      --------->YAB1--------->ARR11(3) ----- ---ATHB12<---------AHL20(2)  <---------YAB1 <----------DOF2--------->WOX13(1)<---------REM1(1)------   tcatgtatatatttttttttgtgtgtggttatattataatgtacatcctttggtgttcatgttaatcacatttcaggaagatgtagatttgatgcagaac  6187800  Previous    Next  AGI:  At3g18060.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G01330.1); similar to WD40-like [Medicago truncatula] (GB:ABE80134.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68164.1); similar to hypothetical protein OsI_000206 [Oryza sativa (indica cultivar-group)] (GB:EAY72359.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal (I Range:  from: 6183779    to: 6187080    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g18070.1    Description:  glycosyl hydrolase family 1 protein. similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18080.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68163.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74265.1); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) Range:  from: 6187300    to: 6189953    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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