Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <------NtERF2                                             ------>NtERF2                                            --------->RAP2.6(2)                                            --------->RAP2.3(3)                                            --------->RRTF1(2)                                  --------->MYB52(2)                                 <-------TEIL--------->LBD16                                <---------MYB52(1)    --------->At4g35610                               <---------MYB52(1)     <---------At4g35610                           ------>MYB83  --------->ANAC46                         <---------AHL20(2)                           ------>MYB46(1)  --------->RRTF1(3)                    --------->AHL20(1)                        --------->HSFB2a(1) --------->RAP2.3(2)                   --------->AHL20(2)                        <---------HSFB2a(1) --------->DEAR3(1)           ----------->GT1 <---------HSFB2a(2)    --------->HSFC1(2)  --------->ANAC46          --------->ANAC46 --------->HSFB2a(2)    <---------HSFC1(2) <---------LBD16   <---------ATHB12    --------->AHL20(2) ---->TEIL              --------->MYB46(3) --------->RAP2.3(1)  --------->At4g35610                 - ------CCA1(2)     --------->HSFB2a(2) <-----------GT1<------NtERF2<---------REM1(2)   ----------->GT1   tatctcgaaattgccatcttgctcgaaccatccggttcgtttaacgccgcaatcgcagcgcaaatcatctacacacagaaaaaaaaaattagtaacaaaa  6171300                                                                      <---------PCF2        <---------------AGL15         <---------YAB1                 <------NtERF2        --------------->AGL15         <---------TOE2(3)             <---------MYB46(3)     --------->MYB52(1)     --------->MYB52(1)<---------TOE2(3)                         --------->ALFIN1   --------->ALFIN1 --------->DAG2      ---------->DOF2  <---------TOE1(3)       <------ZmHOX2a(1)    <-------MYC3 --------->DOF2----------->GT1   <----------DOF2    <---------LBD16--------->ALFIN1------->MYC3   aaaaaagtaactgaatttagttataaaggaagaggcttttaagattgaacttacttcggagtaaggagggtggggcattgaaacatgtggagataactga  6171400                                         <--------P                                        <-------GAMYB                                       <---------MYB46(3)                                      <---------ANAC46                                   <---------DEAR3(1)                --------->GLK1(1) --------->ZAT2                <---------GLK1(1) <---------ZAT2               <---------ARR14(2) --------->ATERF1(1)               --------->ARR14(2) <---------At4g35610            --------->LBD16       --------->At4g35610                   <------MYB83           <---------ANAC58      <---------RAP2.3(1)            <---------LBD16           <---------ANAC58     <---------ANAC58               <<<<<<<<<SPL1           <---------ANAC55(2)  <---------RAP2.6(2)            <<<<<<<<<SPL4  --------->MYB52(1)           <---------ANAC46     <---------ANAC58 --------->ANAC58       <------MYB46(1)           <---------LBD16      <---------RRTF1(2)             <<<<<<<<<SPL5  ---------->DOF2     ---           --------->ANAC55(2)  <---------RAP2.3(2)           <---------SPL7 ------>ZmHOX2a(1)<------          <---------LBD16      <---------LBD16   --------->ANAC46   --------->ARR14(2)    <---------WOX13(1)       <-------GAMYB      <---------ANAC46       --------->ANAC58   <---------ARR14(2)  --------->ATHB12      <---------MYB46(3)  <---------ANAC58 <------MYB46(1)  <---------------AtSPL3     --------->ICU4    <---------LBD16 <---------ANAC58 <---------At4g35610    <---------------AtSPL8<------ZmHOX2a(1)   ------------>AtMYB77   <---------ANAC58 <------MYB83    <------------------SPL14  --------->YAB1 ----------->RAV1(2)<---------ANAC46 <------NtERF2        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---- --------->At4g35610<---------ANAC58<---------ERF1       <---------YAB1--------->MYB59 <---------YAB1   aacatctgcggttgcgggatttgcgtttgcgtttgcggctgcggttggaagacgacatggttattgtacggatttggtcctaaaggatgatgattggagg  6171500                                                         <-------TEIL                                                         ------>ZmHOX2a(2)                                                       --------->ARR14(2)                                                       <---------ARR14(2)                                         <------ZmHOX2a(2)                              ==================================HOX2a_HOX2a                              <------ZmHOX2a(1)        ------->TEIL                              =================================HOX2a_HOX2a                     <---------At4g35610<---------ARR11(3)                     --------->At4g35610--------->ARR11(3)                   --------->ZAT18     =========================HOX2a_HOX2a                   <---------ZAT14     <------ZmHOX2a(1)<------ZmHOX2a(2)                          <-            --------->DAG2    ==================HOX2a_HOX2a           --------->ARR11(3)          ---         <------ZmHOX2a(1) =====================================HOX2a_HOX2a                      <---       <---------TOE2(3)   ====================================HOX2a_HOX2a                       ---- -------->GT1      --------->ZAT14     ========================HOX2a_HOX2a                       ---- ---AtMYB61---------->DOF2 <------ZmHOX2a(1)      --------->CCA1(2)   <---------ARR11(3)       ------ ----->ALFIN1--------->DAG2=====================HOX2a_HOX2a    ------->TEIL        ---------->DOF2---   tgggaaaatgaggaaaaggggtgaactgaggaggatgatgaggatcaccaagagatggatccatggatgtgagatttttgcagagcaaagagaagagaag  6171600  --------->At5g28300 ----------->GT1 ------TEIL------------------------>ANAC81                                    <XXXXXXXXXXXXXXXXXXXXXMIR855 --------------------->ANAC81                                                <----------DOF2 ------ARR14(2)                                          <---------TOE2(3) ---------->ID1 ----->ARR14(2)                                ----------->GT1            <-----------GT1 ----->ARR11(3)   <----------ID1               <------MYB46(1)          <------------------------ANAC81 ----->ARR10    <---------------AtSPL8    --------->ALFIN1      <---------TOE2(3) ------>CCA1(2)---------->DOF2 ---------->DOF2 <------MYB83     <---------TOE1(3)   atacagtaaaaaaaaaaaaaagaacaaaaaaaaaaaagacagaggtggaaggtgagatttagatttagggtttttttttctttttttttgttttttgctc  6171700                                                                     <---------ANAC46                                                                    <------MYB46(1)                                                                    <------MYB83                                                                   --------->ALFIN1                                                                  <--------P                                                                  --------->ALFIN1                                                                <------MYB83                                                                <------MYB46(1)                                                               --------->MYB59                 ------                                                               --------->MYB46(2)     <------ZmHOX2a(1)                                                               --------->MYB111(1) <------NtERF2                                 <---------AHL20(1)       --------->DAG2           --------->ATERF1(1)                                 --------->AHL20(2)      ---------->DOF2         <---------ANAC46              <---------AHL20(2) <---------AHL20(2)  --------->AHL20(2)          <---------DEAR3(1)         <---------YAB1          --------->AHL20(1) --------->AHL20(2)           --------->ALFIN1      <----------DOF2         *TSS<---------AHL20(2)<---------AHL20(2)          <---------LBD16------   tgagagctcttttgatttttttgtttttgtgaaaataaaatttttgtgagagaaataaataaagttaggttggggagagagaggcggaggagtagagacg  6171800                                                                                  <---------CCA1(2)                                                                           --------->ANAC55(2)                                                                           ==========================                                                                           <---------ANAC55(2)                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                           <---------ANAC46                                                                           <---------ANAC55(1)                                                                           <---------O2                                                                           --------->TGA1a                                                                           <---------TGA1a                                                                           --------->O2                                                                           <---------bZIP60(2)                                                                          ----------->bZIP910(1)                                                                          ----------->STF1                                                                         <---------TGA2(2)                                    --------->ATHB12                    ----------->TGA1                               --------->MYB46(3)                       ----------->HVH21                               <------------AtMYB77                  ------>ZmHOX2a(2)                             --------->MYB52(1)                    --------->ARR14(2) <------ZmHOX2a(1)     <---------AHL20(2)         <---------ETT(2) <---------ARR14(2)         <------ --->ANAC58           --------->AHL20(2)          --------->ETT(2)<------ZmHOX2a(1)         --------- --->ANAC58       <---------YAB1  <---------MYB52(1)       ----------->HVH21  <-----------HVH21 <----   aaaggatgagaagaaagattactattaaatctaaccgttgatttgttttctatcgacggttttgacgaggatcgatgacgtgtcatatcattttgtcttt  6171900       --------->ARR11(3)    <---------TOE1(3)    <---------TOE2(3) <---------AHL20(2) ====bZIP_DOF                             <-----------GT1 ----DOF2             <------------------------ANAC81                             --------->YAB1 ->ID1<------ZmHOX2a(1) <----------DOF2<---------ICU4                  >>>>>>>>>>>>>>>>>LFY -----AHL20(2)     <----------DOF2<-----------GT1             --------->REM1(1)   --------->AHL20(2)   tattttaaggattttgtgtttctttactttgatttttttcatttttgcctcttagaattttgctacattttcgctccaatgtaataaaaaatcaccaaaa  6172000                          <---------AHL20(1)                          --------->AHL20(2)                          <---------AHL20(2)                       <---------AHL20(2)                       --------->AHL20(2)           --------->DREB2C(2)             --------->GLK1(1)           --------->RAP2.6(2)            --------->ARR11(3)           --------->ANAC58<---------AHL20(2)       <----------DOF2           --------->ANAC58--------->AHL20(2)   ------>ZmHOX2a(1)          --------->MYB46(3)          ---------->DOF2     <---------ZAT6          --------->DEAR3(2) <---------YAB1<---------GLK1(1)         ------->TEIL --------->AHL20(2)  <---------ARR11(3)                       --------->YAB1 ---   ttttaaaaatggaccgccaaaattttaaattatttttctgaaaagaactcctcgctttcagtgtaaaacaattttgttgattttagaataacatcgaatg  6172100                                      <---------MYB52(2)        <---------ANAC55(2)                                      --------->MYB46(3)    --------->YAB1                        --------->ANAC55(2)      ---------->DOF2--------->ANAC58                        <---------ANAC55(2)     --------->AHL20(2)                        -----------                    --------->TOE2(3) <------------MYB.PH3(2)   --------->ANAC58 <---------At4g35610 -------->GT1 ----------->GT1       <-----------GT1        <---------YAB1        --------->At4g35610   aagtatatagcaaacactgttacattaagtaacccatgtaacaaactccattaaagagtgtatgataagtaagagatgtattgagatgagtatggcaaaa  6172200  Previous    Next  AGI:  At3g18035.1    Description:  HON4; DNA binding. similar to HON5 (HIGH MOBILITY GROUP FAMILY A 5), DNA binding [Arabidopsis thaliana] (TAIR:AT1G48620.1); similar to DNA-binding protein (GB:AAA50196.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain High mobility group proteins HMG-I and HMG-Y; (InterPro:IPR000116); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637) Range:  from: 6169096    to: 6171730    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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