Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <---------DEAR3(1)                                             --------->HSFC1(2)           <---------HSFB2a(1)                                             <---------HSFB2a(1)          <---------HSFC1(2)                                             <---------HSFC1(2)           --------->HSFB2a(1)                                             --------->HSFB2a(1)          --------->HSFC1(2)        --------->ANAC58                 ----------->HVH21            --------->ANAC46        --------->ANAC58                 --------->DEAR3(1)           <---------O2      ---------->DOF2                   --------->At4g35610        --------->ZAT14   <---------ANAC46          <---------ARR14(2)                    --------->ZAT18 ------------>AGL1           --------->ARR14(2)                    <---------ZAT14    <---------AtMYB61 -At4g35610              ----------------->AGL1            <---------ANAC46     ------>ZmHOX2a(1) >At4g35610       <------NtERF2 <---------YAB1    <---------ALFIN1 <---------ZAT18  --------->ALFIN1   ccattcggtgaagcaatggcagagattgccgaatttgatagcagcgacgcttccacttgcagcgagtagtacacgaggcttcctcggtgtggtattcact  6168600                                                            ---------->DOF2                                                      --------->CCA1(2)                                                      <------ZmHOX2a(2)                                                     --------->AGP1                                                     >>>>>>>>>GATA-4                                                     >>>>>>>>>GATA-2                                                     >>>>>>>>>GATA-1                                                     >>>>>>>>>GATA-3                                                     --------->ARR11(3)       <---------------------WRI1                   ---------->ID1                    <---------ARR11(3)     <---------DEAR3(1)                <----------DOF2               <-----------HVH21            --------->SPL7    ------->GAMYB    <---------ANAC58                    <-----------GT1------>ZmHOX2a(2)<---------MYB46(3)--------->MYB52(1)    <---------ANAC58                 <----------DOF2--------->GLK1(1)  <---------ATHB12--------->TOE1(3)   tccatgtcttgtctgtctcttttcccattctccatagctcttttacaccttcagagatctagcaaagtagccaatggttcggcgaagaaccctaaccgaa  6168700                                                                                <---------ANAC58                                                                                <---------ANAC58                                                                           --------->MYB52(2)                                                                       <---------YAB1                                                                     --------->YAB1                                                                     <---------ICU4              ----                                                                     <--------HAHB4<-----------HVH21     ------>ZmHOX2a(2)                                              <---------ATHB12 <---------WRKY38(1)   <---------AGP1                                                 --------->WOX13(1) <---------WRKY12   --------->ARR11(3) --------->YAB1        ---------->DOF2    <------ZmHOX2a(1)<---------ANAC46 ----   aaattgatctggtcgaagagaatatcaaaatgttttagagggaagagaaagagagaggcccgagaggacaatcattttagttgctggtcaaatgggccat  6168800                                                              <---------AHL20(2)                                                              <-----------GT1                                             <---------AHL20(1)                                 --------->At5g28300   <---------AHL20(2)                                ----------->GT1       --------->AHL20(2)                            <       <----------DOF2  <---------SPL7       --------->AHL20(1)                                     < ----->WRKY12        <-----------HVH21       <---------ARR11(3)                       <---------GLK1(2) ----->WRKY38(1)  <------NtERF2<---------DEAR3(1) <---------AHL20(2) <---------MYB52(1)--------->GLK1(2)   tgactcactcttttttaggcctcggtcgtatgggctgtgaatatcgatatatttcattttatatttacttcgtttggactgcaatttcgattctgagttc  6168900                                                         <-----------HVH21            --------->ANAC58                                                        <---------TGA1a               --------->ANAC58           --------->ZAT6                               --------->TGA1a      --------->ICU4     <---------ZAT6                                     --------->O2         <---------YAB1     <---------ANAC46                                   <---------O2         <---------AHL20(2)   <---------ANAC46                                   *TSS                 <---------RVE1(1)  <---------MYB52(1)                        ======================bZIP_DOF <---------CCA1(1) <---------ZAT14                            <---------DAG2                <---------ARR11(3) <-------GAMYB                              <----------DOF2  --------->At4g35610<---------YAB1<------ -----------RAV1(1)            ===================================bZIP_DOF<---------ARR14(2)  ------- ---------MYB46(3)             ---------->DOF2        --------->MYB52(1)  --------->ARR11(3)---------   gactgttgtgttaactctaacatgttttcgagtcaaagttatatagctttttgagccaacgtgagatggaaatgaagatattattagtaagaaattaagt  6169000                         ----------->GT1                      <---------ANAC58                      <------MYB83   --------->ANAC46                      <---------ANAC46                      <------MYB46(1)--------->ANAC58                                   ----------->GT1                      <---------ANAC58            ------------>CBF            --------->At4g35610   --------->ETT(2)  <---------MYB46(3)          --------->ANAC46          <---------At4g35610    --- ---ANAC55(2)        --------->MYB55(2)     --------->ARR11(3)      <---------At4g35610-------------- -->ANAC55(2)       <---------MYB55(1)      <---------ARR11(3)      --------->At4g35610<---------WOX13(1) >AHL20(2)         <---------MYB52(1)--------->ANAC58      ---------->DOF2 --------->At4g35610<------   aagagtcgacctgctaaaaccgttgggtggaaaatagacacgaaaacatctccacaatgtgcaaagcggaagcagagagcagaagacagattgaaaaaaa  6169100                                                                             <------MYB83                                                                             <------MYB46(1)                                                                --------->ANAC58                                                                <---------TGA1a            --------->DEAR3(1)                                                                <---------O2 ----------->GT1                                                                --------->O2--------->MYB59--------->DEAR4(1)         --------->ANAC58                                       ============================bZIP_DOF         --------->RAP2.6(2)                                    --------->bZIP60(2)        <---------ETT(1)         --------->ANAC46  <---------TOE2(3)                    --------->TGA1a            --------->DREB2C(2)      --------->DEAR3(1)  ---------->DOF2                <---------At5g28300<---------AtMYB61     --------->DEAR3(2) <---------YAB1                  <-----------GT1<---------TOE1(3)   --------->At1g77200 ------->DOF2        <---------YAB1         <---------HSFC1(2)  --------->ANAC58          --------->DEAR3(2) ---------->ANAC81   --------->ICU4         --------->HSFC1(2)<---------ALFIN1   ---------->DOF2 ---- ----ID1 --------->ANAC58 ================================================bZIP_DOF      <---------ALFIN1   caaaggcacagacgcaataagagattattaaagatggaagactagaaacatcgctaatttacagccacgtcttatggtttggttaaagacacaccgacaa  6169200                                                                      <---------GLK1(2)                                                                      --------->ARR11(3)                                                                      <---------ARR11(3)                                                                ------>ZmHOX2a(1)                                                               --------->TOE2(3)   <---------AHL20(2)              --------->ZAT18        ----------->RAV1(1) <---------YAB1            --------->AHL20(2)              <---------ZAT14  --------->ZAT14          --------->AHL20(2)     <---------AHL20(2)       <---------DOF5.7(2)     --------->At4g35610      <---------AHL20(2) --------->AHL20(2)     --------->DOF5.7(2)       <---------At4g35610     --------->AHL20(2)--------->AHL20(2) ----->MYB46(3)          <<<<<<<<<TBF1       --------->TOE1(2) <---------ANAC46--------->AHL20(2)   <   caacaccattaacgagtctactatttcttcttctgcagacaacaaaacctagaaaaattaaaattccttatagatttttatataatttaagatgcgattc  6169300                                                                                  <---------YAB1                                                                               <---------YAB1                                                                             <--------HAHB4                                                                             <---------ICU4                                                                            <---------YAB1                                                                            --------->ICU4                                      --------->MYB46(3)                  <---------ICU4                                     <---------ALFIN1                    <------ZmHOX2a(2)                                --------->ANAC58                        <---------ARR11(3)                                --------->ANAC58                        --------->ARR11(3)                                --------->ANAC46                     --------->HSFB2a(2)                              --------->MYB52(1)                     <---------HSFB2a(2)   <---------ZAT14 ---------ALFIN1             ------>ZmHOX2a(1)     --------->YAB1    <---------HSFC1(1)    --------->ZAT14   caacacctaaaacaactaaaaaaaaacactcctaacgccaaacaccaaggctattatgtctaggttgttttctagatcattattattcttcagaacagag  6169400                                                                                             <-------GAMYB                                                                                            ---------                                                                                            <--------                                                                                   <---------At4g35610                                                                                   --------->At4g35610                                                                                   --------->ZAT2                                                       ------>ZmHOX2a(1)        --------->ZAT2              <---------At4g35610               <---------ANAC58                <---------ZAT2    ---           <---------At4g35610                  <---------ANAC58                --------->At4g35610         <---------ANAC58                    <----------DOF2                    <---------At4g35610         <---------ANAC58               ------>ZmHOX2a(1)       ---------->ID1<-----------RAV1(2) <--    <---------AtLEC2                <-----------GT1 ---------->ID1 ------>ZmHOX2a(1)      <---------MYB52(1)   cttcttgcattgcctctgcttctgtctgggtctgtgtttctccttctctttcttgtccttcttcttgtcctccttgtgtctcagcagcttcagtttgttg  6169500  Previous    Next  AGI:  At3g18030.1    Description:  ATHAL3A (Arabidopsis thaliana Hal3-like protein A). Identical to Phosphopantothenoylcysteine decarboxylase (HAL3A) [Arabidopsis Thaliana] (GB:Q9SWE5;GB:Q6ID92); similar to ATHAL3B (Arabidopsis thaliana Hal3-like protein B), electron carrier [Arabidopsis thaliana] (TAIR:AT1G48605.1); similar to unknown [Populus trichocarpa] (GB:ABK93542.1); contains InterPro domain Flavoprotein; (InterPro:IPR003382) Range:  from: 6167646    to: 6168954    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g18035.1    Description:  HON4; DNA binding. similar to HON5 (HIGH MOBILITY GROUP FAMILY A 5), DNA binding [Arabidopsis thaliana] (TAIR:AT1G48620.1); similar to DNA-binding protein (GB:AAA50196.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain High mobility group proteins HMG-I and HMG-Y; (InterPro:IPR000116); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637) Range:  from: 6169096    to: 6171730    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version