Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <-----------GT1                        <----------DOF2                          --------->ANAC58                    ---------->ID1                               --------->ANAC58                  --------->MYB52(2)                          <---------At4g35610                <---------MYB52(1)         <----------DOF2    --------->ZAT2      --------->ANAC55(2)   ggaaaattagtagaaactgtttgtttctttttttttaactctgttcttttgtatatatcactgaagctcgcatatgtataattcatgtaatggaattgca  6123000                                                                   <---------GLK1(1)                                                                   --------->GLK1(1)                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                           <---------AHL20(2)                                                          --------->AHL20(2)                                                          <---------AHL20(2)                                                       <---------AHL20(2)                                  <-----------GT1   <---------ARR14(2)                      ---------                            <---------ATHB12    <---------LBD16  <------ZmHOX2a(1)         --------->ZAT6   tcgcttctgtttccctaagttatttctctaatcaattttctattcaaatatggggatttttttaataggatttgctaatttgtactctggttaacaataa  6123100                                               --------->AHL20(2)                                              <---------YAB1                                            <---------ICU4                                            <--------HAHB4                          <----------DOF2                          --------->ARR14(2)--------->YAB1                --------->HSFB2a(2)                    ------>MYB46(1)        <---------YAB1           <---------ARR11(3)    <-------TEIL    ------>MYB83           --------->ICU4           --------->ARR11(3) >YAB1              -------->P   ---------->DOF2      ----------->GT1  <----------DOF2   gcttgatacattaccagttaccaactcgaattcacaaaagaagtcatcattatatatggagaaaatggaacatcttttagaatttgctttaattcgtttt  6123200         <-----------GT1      <---------YAB1                              <---------ICU4             <---------REM1(1)    <---------AHL20(2)                           ------>ZmHOX2a(1)        <-----------RAV1(1)    <---------ICU4                              --------->TOE2(3)<---------PCF2    --------->AHL20(2)                    <-----------GT1       ----------->TCP11(1)              <--    --------->ATHB51                 <----------DOF2          --------->ALFIN1              >>>>>>>>>   --------->ICU4                 --------->GLK1(2)         <-----------RAV1(1)       <---------ATHB12   ggctaattatttttcggtcttcgttttggctgtgagtttctttgtaacatcctaatttcaatatgtgggccattttgtgttgtagcccatcaaggcccaa  6123300                                                              <-------GAMYB                                                              --------->At5g28300                                              --------->GLK1(1)       <---------DOF5.7(2)                                              --------->CCA1(2)       ---------->DOF2               ---------->DOF2               <---------ARR14(2)     --------->DOF5.7(2)          --------->MYB52(1)               --------->LBD16   <---------MYB46(3)      <---------ZAT18                    <---------LBD16    <------NtERF2                  <------MYB46(1)      --------->ZAT18 --------->ALFIN1 <-----------GT1      <---------ANAC46               <------MYB83 -------ARR11(3)--------->DAG2    <---------YAB1           <---------LBD16               <--------P >>>>>>>>LFY ------->GAMYB   ---------->DOF2 --------->ARR14(2)<---------MYB52(1)       <---------MYB52(1)   tgtcttattgcacaacgaaaagggatgttgcaaaagatgataaaccggatatgaattcagtcgcggttaagttaacgcgaagacaaaaccggttggacat  6123400                                                                            --------->YAB1                                                                       --------->SPL7                                                                      <---------SPL1(1)                                                                     <---------SPL1(2)                                                                    <---------ANAC46                 <---------ICU4                                    --------------->AtSPL3               *TSS                                                --------------->AtSPL8              --------->YAB1                                    --------->At4g35610             --------->ICU4                                     <---------At4g35610--------->ARR14(2)          <---------DEAR3(1)                                    <---------ZAT2  --------->ANAC58   <----------DOF2                       --------->YAB1--------->At4g35610 <------ZmHOX2a(2)--------- <------MYB46(1)<---------YAB1          <---------ATHB12        --------->ZAT2  --------->ANAC58 <------MYB83<---------YAB1   <-----------GT1          --------->ZAT2<---------SPL7<---------ARR14(2)   gttcggttttcggcgatgattatttcaacgtttttcagtctaatcaaaaccaatacgagcagacacagctccgtacgatcacaaggattcactgatttct  6123500                                                                         <-------TEIL                                                                       --------->ARR11(1)                                                                       <---------GLK1(2)                                                                       --------->ARR14(2)                                                                      <---------HSFC1(2)                                                                      --------->HSFB2a(1)                                                                      --------->HSFC1(2)                                                                      <---------HSFB2a(1)                                                                     ----------->ARR10                             <------NtERF2                    <---------At4g35610                            --------->LBD16                   --------->ZAT2                        --------->DAG2                        --------->At4g35610                 ---                       --------->DAG2 <---------MYB46(3) --------->ZAT2<---------ARR14(2)         ===    <---------YAB1    ---------->DOF2<---------AtMYB61   <---------At4g35610                     ---- <----------DOF2 >>>>>>>>>TBF1 --------->GLK1(1)         --------->At4g35610                     ---- >GLK1(1) ---------->DOF2 <---------LBD16<---------MYB46(3)   <---------ZAT2       --------->At4g35610   aagcttttcatagaaagaagaagaaaaaggcggaattcgatggtggatgcgattcaagtagctgagctgagaagattcgtcgagcagttgaaattgaatc  6123600             <<<<<<<<<ARR1             <<<<<<<<<ARR2             <------ZmHOX2a(2)            --------->ARR14(2)            <---------ARR14(2)               --------->LBD16            <---------ARR11(3)         --------->ARR14(2)          --------->ANAC46             --------->ARR11(3)  <---------GLK1(2)                    <---------ARR11(3) --->ZmHOX2a(1)                        <---------ARR14(2)                                           < ===================HOX2a_HOX2a       --------->RVE1(1)                       <----------DOF2       - ----->TOE1(2)                  ---------->DOF2                  ----------->HVH21                  < ----->TOE2(2)  ------>ZmHOX2a(1)   <---------GLK1(2) <-------TEIL        <----------DOF2       <----   cttcgattctccacgatcctagtctggttttcttcaaagaatatctccgaaggtgattcattcttctctgacttatctttctttcggtgaatttcatttg  6123700                                                                         <------ZmHOX2a(1)                  <---------At4g35610                           <---------ZAT14                  --------->At4g35610                         <---------ZAT14            <---------AtLEC2                                  --------->REM1(2)             ---------         <-----------GT1                                      --------->ZAT14         --------->LBD16 -------GAMYB     <---------ZAT2                            <---------------AtSPL8<---------ARR14(2) -------->At4g35610           <----------DOF2              <---------ANAC58       --------->ARR14(2) ---------At4g35610        --------->GLK1(2)               <---------ANAC46--------->At4g35610 -------HVH21     --------->ZAT2                           <---------ANAC58<---------At4g35610   tcagttgaatttttccatggagctgtgagtttctttgtaatcgatgctcgttcccgtcttatcgtgtacagtttaggagctcaagttccgaagattgaga  6123800                                                                               <----------DOF2                                                                             <---------YAB1  --------                                                                            <---------ARR11(3)                                   <---------TOE2(3)                        <---------AHL20(1)                   <---------YAB1  <---------TOE1(3)                        --------->ARR11(3)                --------------------->WRI1                                 --------->RVE1(1) -------- -->GT1     <----------DOF2        --------->MYB59                         --------->CCA1(1) <-------   aaactgtaagttgtctttcttatgaattatcgatgtttaggtttctcttgtttgtgctacttgggattgagttcttaatatctttgtgttgaattgatgt  6123900  Previous    Next  AGI:  At3g17860.1    Description:  JAI3/JAZ3/TIFY6B (JASMONATE-ZIM-DOMAIN PROTEIN 3). Identical to Protein TIFY 6B (TIFY6B) [Arabidopsis Thaliana] (GB:Q9LVI4;GB:Q56W78;GB:Q8LF26); similar to JAZ4/TIFY6A (JASMONATE-ZIM-DOMAIN PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT1G48500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42344.1); contains InterPro domain ZIM (InterPro:IPR010399) Range:  from: 6119773    to: 6123025    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g17880.1    Description:  ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN); thiol-disulfide exchange intermediate. similar to ATHIP1 (ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 1), binding [Arabidopsis thaliana] (TAIR:AT4G22670.1); similar to Hsp70 interacting protein/thioredoxin chimera [Vitis labrusca] (GB:AAK64512.2); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR0 Range:  from: 6123415    to: 6126287    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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