Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------TOE2(2)                                                <---------TOE1(2)                                            ------>MYB83                                            ------>MYB46(1)                                            -------->P <---------ANAC58                                           --------->MYB55(1)                                          <---------MYB46(2)<---------YAB1                                          <---------MYB59  <---------ARR11(3)                                          <---------MYB111(1)                                       <                                     --------->TOE2(3) <---------ANAC55(2)                          -                                     <---------MYB59   --------->ANAC55(2)                         <-                                     <---------DAG2    <---------ANAC55(1)                        ---                                   ------>MYB83 ------>MYB46(1)                                   <--                                   ------>MYB46(1)     <---------ANAC58                           <--            ----------->GT1        -------->P --------->TOE2(2)                                   <--            <----------ID1        ------>ZmHOX2a(1)--------->DOF5.7(2)                            ---          ---------->DOF2        <---------MYB111(2)   <---------ANAC46                    <---------ICU4    --------->ZAT6             ------>ZmHOX2a(1)------>MYB83--------->ICU4             <-----------GT1 ---------AHL20(2)         <-----------GT1<---------MYB111(2)--------->YAB1    <-----------GT1 ------   attttaacacaaaaaagaaaaacatttagtttcctcctaccttacctacctacgtttacgtgatcatcaacaattctatttttactaatttactcattaa  6097000       ---------->DOF2 ---------ARR11(3) -------->ARR11(3) --------CCA1(2) ------>AHL20(1)                                           --------->ANAC58 -------AHL20(1)                                       --------->ARR11(3)                    -------- -------ARR11(3)                           ----------->GT1 --------->ANAC58             <---------AHL20(2) -------AHL20(2)                       --------->ARR11(3)  <---------TOE2(3)     ----------->GT1    - ------>ARR11(3)                 --------->SPL7   --------->AHL20(2)        <---------MYB46(3)    <-- --->AHL20(2)              --------->MYB52(1)     <---------AHL20(2)   <---------At4g35610  <--------   tatatcttctaaagtatacataaacaaacaaactgtacgaagaaattgaaatataaatatcaaggaaattggtagcagttgttgagttatttcaatgatg  6097100                              --------->ARR14(2)                              <---------ARR14(2)                             <---------GLK1(1)                             <----------TaMYB80                             --------->GLK1(1)                            ---------->TaMYB80                         --------->ANAC58                         --------->ANAC58                    <---------ANAC58                    <---------ANAC58                    --------->ANAC58                    --------->ANAC46                                                        ---------                    --------->ANAC55(1)                                                    <---------ANAC55(1)      ----------->GT1  --------->MYB52(1)                                                  <---------ANAC58   <---------ANAC46 --------->ANAC58                                                       --------->ANAC55(2)   <---------bZIP60(2)----------->HVH21                                                    <---------ANAC58 <---------ZAT14    <---------ANAC55(1)                                                   <---------LBD16 --------->ZAT14    <---------ANAC55(2)                                     <----------DOF2<---------ANAC46 ->YAB1             --------->ANAC55(2)     <---------AHL20(2)         <---------AHL20(2)<---------At5g28300 ---------->HVH21 <-----------GT1     <---------ANAC46       <---------At4g35610     <---------GLK1(2) -------ANAC46 <---------ICU4<---------CCA1(2)               --------->At4g35610     <---------ARR11(3) -ATHB12      --------->AHL20(2)   <---------MYB52(1)      <---------RAP2.6(2)       --------->ARR11(3)   ctgtgaagtggaaacatttattacgtaacgcatatccgttttgtatataaactcttatttttcggctgtatatataatctttttagagattttccgtgag  6097200                                                 >>>>>>>>>MYB98                                 <----                                                --------->MYB52(1)                              -----                                               ------>ZmHOX2a(1)                              <------                                             --------->YAB1                                   -------                     <---------ICU4        --------->GLK1(2)                                  <------                     --------->YAB1        --------->ARR14(2)                             --------->ICU4                    --------->ICU4         <---------ARR14(2)                             --------->AHL20(2)            <-----------RAV1(1)       --------->LBD16 ---------->DOF2                <---------ANAC46      <---------AHL20(2)            <---------LBD16------->GAMYB               <---------AHL20(2)----     --------->AHL20(2) <-----------GT1<------ZmHOX2a(1)                     <---------YAB1<---------ICU4 >LBD16    <---------YAB1           <-----------RAV1(2)                    <---------ZAT6 <---------AHL20(2)   aaatagattaaatattgttgccataataacctgtaatctcaggagaatcctaacggaaaagagaatattagacgatagtattatatggagtattaattac  6097300                                      ---------->DOF2                                       ---------                                     --------->AHL20(2)                         --------->ATHB51                            --------->ANAC46                                    <---------ICU4          --------->HSFB2a(2)     --------->YAB1                                --------->AHL20(2)          <---------HSFB2a(2)   ------------>CBF                                <---------AHL20(2)  <-----------GT1           --------->ANAC58                               --------->At5g28300 -----ANAC55(2)            <---------ZAT18                              <---------At5g28300---------- ---->ANAC55(2)            --------->ZAT14                       --------->ANAC55(2)    <------ZmHOX2a(1) -----GT1 <---------HSFC1(1)--------->ANAC58                     <---------ANAC55(2)  <---------TOE2(3) -->AHL20(2)             --------->At4g35610             --------->HSFB2a(2)   <---------YAB1       - ---AHL20(2)             <---------At4g35610  <-----------GT1  --------->YAB1  --------->ICU4<------ZmHOX2a(1) ----->ICU4  <------ZmHOX2a(1) ----------->RAV1(1)    <-----------GT1  <-----------GT1<---------TOE1(3)   ttattaacaattctaggagataatatcagcacacaacaataaaagaaattactaatttactggaatcatgtattcaccgtaattatttaaggagaggaaa  6097400                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                <----             <----------DOF2                                                                    -----          <---------ARR11(3)                                                                   ------          --------->ARR11(3)          =========================HOX2a_HOX2a              <-----------GT1 -->GT1 --------->ANAC58              <------ZmHOX2a(1)                            <---------YAB1 --- ->GT1  --------->ANAC58           <-----------RAV1(2)           <----------DOF2 --------->YAB1------ -------->AHL20(2)  *TSS     <---------ALFIN1           ------>ZmHOX2a(2)       --------->ICU4 ------   aaaaaaatacaagctctttctctataaacacacactctcaggagagaagttgtattgatcgtcttctctttccctaaacacactgattattttctctccg  6097500      --------->O2   <------NtERF2  ------>NtERF2  <---------RAP2.6(3) --------->DREB2C(2) --------->RRTF1(2) --------->RRTF1(3) --------->RAP2.3(3) --------->ANAC46 --------->RAP2.6(2) --------->RAP2.3(2) --------->DEAR3(1) ------NtERF2 -------->RRTF1(1) -------->RAP2.6(1) -------->ATERF1(1) -------->ORA47(2) -------->ERF1 -------->RAP2.3(1)        --------->DOF5.7(2) --------RRTF1(1)      ------>ZmHOX2a(2) --------ATERF1(1)    --------->GLK1(1) ---->NtERF2          <------ZmHOX2a(2) --------RAP2.3(1)   --------->ARR11(3) ------>O2           <---------ARR11(3)               --------->LBD16 -------O2           XXXXXXXXXXXXXXXXXXXX>MIR863-5P  --------->LBD16 -------DEAR3(1)     <---------AGP1                 <---------LBD16 ------>ANAC46       --------->ARR14(2)        ------>NtERF2 --------->YAB1 -----ATERF1(1)      --------->AGP1<---------ALFIN1<---------LBD16 ->NtERF2            <---------ARR14(2) --------->MYB52(1)   <---------ICU4 ----->HVH21 <---------At4g35610--------->TOE2(3)  <------NtERF2      --------->ARR14(2) ------>DEAR3(1)    <---------CCA1(2) --------->AtMYB61    <-----------ARR10 --->DEAR3(1)--------->At4g35610--------->TOE1(3) ------>NtERF2 --------->DEAR3(1) --->ANAC46  --------->ZAT14 <---------DOF5.7(2)----------->HVH21  --------->DEAR3(1) ------>ZmHOX2a(2)   acgccgccatgtctctgctctcagatctcgttaacctcaacctcaccgatgccaccgggaaaatcatcgccgaatacatatggttcgatctcgcttctct  6097600                                                                                                  <--                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                          -----------                       --------->ANAC55(2)                                                <---------ANAC46                   <-----------HVH21                                                <----------DOF2            ------->GAMYB ------->TEIL                              <----------DOF2------>ZmHOX2a(2)           --------->MYB46(3)    <----------DOF2               <-----------GT1   <---------ARR11(3)      <---------DAG2   <---------ANAC55(2)              ---------->DOF2          --------->ARR11(3)      <----------DOF2<---------ANAC46               <------ZmHOX2a(2)      <---------AHL20(2)     <--   ctgtttcactttaaccacaagtgtcatgtatcgttctttcttcatattgctgcgatccaaaagtttatctcttttgttatattgatctttttgcgagttt  6097700                                      ------>ZmHOX2a(1)                                 --------->WRKY12         ----------->GT1                               <-------GAMYB         <---------ANAC58                              <---------ANAC58       <---------ANAC55(1)                              <---------ANAC46       <---------ANAC46            <----------DOF2                              <---------ANAC58       <---------ANAC58        <---------CCA1(2)        <---------YAB1 <---------ANAC58              <---------ANAC55(2)     ---------->ID1     ------->TEIL      <---------ANAC46              --------->ANAC55(2) <---------ANAC58 -------ANAC58         <---------ANAC58         <---------AHL20(2)    --------->DAG2 ------>AGL1<-------TEIL --------->ALFIN1<----------DOF2 ----------->GT1 <---------ANAC58 -------ANAC58     --------------------->WRI1  --------->AHL20(2)    ---------->DOF2      ---------->ID1   gggtatgaacatgattcatttcatggagtgtttcgttgtcctgctttgaattaatacgtgtgttaaaaacataaagcttgtctcttttttttgtcttctt  6097800                                                   <---------HSFB2a(2)                                                   --------->HSFB2a(2)                                                  ------>ZmHOX2a(2)                                                <---------ARR14(2)                                                <---------AGP1                                                --------->ARR11(3)                                                --------->ARR14(2)         <-----------RAV1(2)                                          <---------MYB46(3)            --------->ANAC58                         <---------MYB46(3)   <---------MYB46(3)        --------->ANAC58                        <---------YAB1    ------>ZmHOX2a(2)        --------->ANAC58                        <---------WOX13(1)<---------DEAR3(1)       --------->ANAC58                       >>>>>>>>>ARR1    --------->ARR14(2)       --------->At4g35610                       >>>>>>>>>ARR2    <---------ARR14(2)  <---------GLK1(1)                      --------->ATHB12 ==================HOX2a_HOX2a  ---------->DOF2  <---------WOX13(1)                     <---------YAB1    <------ZmHOX2a(1)    --------->GLK1(1)       <---------AHL20(2)   gtagtttttttgagtttttttgtatgattgttgaataaacaggatcggtggatctggaatggatatcagaagcaaagccagggtatttgatttataaatc  6097900  Previous    Next  AGI:  At3g17820.1    Description:  ATGSKB6 (Arabidopsis thaliana glutamine synthase clone KB6); glutamate-ammonia ligase. Identical to Glutamine synthetase cytosolic isozyme 1-3 (GLN1-3) [Arabidopsis Thaliana] (GB:Q9LVI8;GB:Q5PNX0;GB:Q84W44); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to glutamine synthetase [Raphanus sativus] (GB:BAA04994.1); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase/guanido kinase, catal Range:  from: 6097420    to: 6099601    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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