Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------YAB1                 <-----------GT1                                                      --------->YAB1           <-----------GT1     --                                                      --------->ATHB12  --------->GLK1(2)         ---                                                     <---------ATHB12   <---------ARR11(3)       ----                      ------->TEIL                <-----------GT1       --------->ARR11(3)    -------              ---------->DOF2  <-------TEIL  <---------ICU4          --------->ANAC55(2)     <------- -->DOF2    <---------YAB1 <---------YAB1   <---------ATHB12<---------ZAT6 <----------DOF2 --------->WOX13(1)   cttagtgattcactataaaagatgaatcgatgattcattcgttgtaatcaattcactcattagtgtttcttaagtatctttttgctgtttttccaatcat  6048500                                                                                    --------->WOX13(1)                                                                                   <---------AHL20(2)                                                                                -------->HAHB4                                                                                <--------HAHB4                                                                                --------->YAB1                                                                                <--------ATHB1                                                                                --------->ATHB51                                                                                <---------ICU4                                                                               <---------YAB1                                                                               --------->AHL20(2)                                                                               --------->ICU4                                                                               <---------ATHB51                                                                             --------->YAB1                                                                            --------->AHL20(2)                                                                            <---------AHL20(2)                                                     ------>NtERF2         --------->AHL20(2)                  <---------ZAT18                    ---------->ID1     <---------AHL20(2)                 <-----------HVH21                 <---------RAP2.6(2)  --------->AHL20(2) --------->GT1  <---------At4g35610               --------->RAP2.6(3)------>ZmHOX2a(2)   --------->ANAC58 ------>ANAC46  --------->At4g35610           --------->ATHB51     --------->ARR11(3)    --------->ANAC58 ----->SPL7     --------->ANAC46              <---------ICU4       <---------ARR11(3) <---------ATHB12 -->YAB1      <-----------RAV1(2)            --------->ICU4     <---------WOX13(1) --------->AHL20(2) --ATHB12<-----------GT1                     <---------YAB1  <---------YAB1<---------AHL20(2)       <   acggtataattttacttcaggtcactcggcttgagtaacttgggctcataatttcggcccattctaattgatcttaaattaataattaatcaagcctgga  6048600                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                   --------------->AtSPL8                   --------->ANAC58                       --                   --------------->AtSPL3            ---------->DOF2                               <-               <----------DOF2   --------------->AGL15      --------->ANAC58                       --              <---------DAG2     <---------------AGL15    --------->MYB52(1)                      ---             ----------------->AGL1              <----------ID1                                   <--           <-----------GT1       ====================================================================       <---------YAB1       <----------DOF2<---------AHL20(2)                                     ---     --------->ATHB12<---------MYB52(1) ----------->GT1  --------->ARR11(1)                       <-- ---------YAB1<----------DOF2    <---------ZAT6<---------ICU4     --------->MYB46(3)         ------>NtERF2   taatgaatgatttttgccttttcggtacttctttactgtaagaagttaattaagacaaagaaacggaaacagccatgtagttaatgacattttgcctcca  6048700            --------->AHL20(1)            <---------AHL20(2)            <---------AHL20(1)           <---------ATHB12         --------->WOX13(1)                            <---------ANAC58  <---------ICU4                                       ----------->GT1 ------->ATHB12                                     --------->ARR14(2) -------HAHB4                                <---------HSFB2a(1) -----------ATHB5                            --------->HSFC1(2) -------ATHB1                         --------->MYB52(1) ------->ATHB51                  --------->AHL20(2) <---------ARR14(2)          ----------->GT1 --------ICU4              <------MYB46(1)   --------->HSFB2a(1)                --------->TOE2(3) ------->YAB1              <------MYB83      <---------HSFC1(2)                ----------->GT1 ------>ICU4--------->AHL20(2)  ----------------->AGL3 <---------ANAC46    <---------AHL20(2) -------ATHB12            <---------MYB46(3)<---------KAN4(2)         ----------->GT1 =================================================MADS_MADS        ---------->DOF2 ------>AHL20(2)     <---------At5g28300<---------TOE2(3)   <---------KAN4(2) <---------TOE2(3) -------ATHB51      <-----------GT1   ---------->DOF2  <---------ANAC58    --------->AHL20(2)  <-----   ataattagggccaattaattagttacagttggtaatcaaataaaggaattttcgaattcgtgaatattcaaaaggaaataaatgttaaaaacacagagga  6048800                      --------->YAB1                --------->ANAC58                                                               <-----                <---------ANAC55(2)                                                         <--------                --------->ANAC55(2)                                                 <-----------GT1                --------->ANAC55(1)                                               --------->YAB1                --------->ANAC46                           --------->HSFB2a(2)    <--------ATHB1          --------->ANAC58                                 <---------HSFB2a(2)   <---------ATHB51----          --------->ANAC58     ----------->GT1        <---------DAG2           --------->YAB1 -------        --------->MYB52(1) ------------>CBF        <-----------GT1           ------------>CBF ------- -ZmHOX2a(1)    --------->ANAC58      ---------->DOF2 <----------DOF2       <-----------GT1 <--------   gagagaagcctcacggacacgaaataataaacaatgtaataaaagtcagtgtttgacttttccagacatgagttttatttacaataatacacttccttga  6048900 ----WRKY18(1)           <---------ANAC46 -ANAC58                 <---------ANAC58 ------->RAV1(2)      *TSS        <---------ICU4                 --------->YAB1 ---->HVH21           ----------->HVH21                         <---------YAB1           --------->REM1(1) -->WRKY12          ----------->RAV1(2)              <<<<<<<<<TBF1  <---------ICU4     <----------DOF2 -ANAC58   >>>>>>>>>TBF1 <---------ANAC58<----------DOF2<<<<<<<<<TBF1                --------->At4g35610   cctgggctacgaagaagaagacccctgacttggtcatcatctcctttcttatttcttcttcttcttatcaaaattactaaaactctctgcttcaacttcc  6049000             <-----------GT1                                                         --------->ANAC46   --------->LBD16            --------->GLK1(2)                         --------->ANAC58   ------>NtERF2             <---------GLK1(2)                          --------->ANAC58  --------->DEAR3(1)       ----------->ARR10                <---------MYB52(1)  <---------ANAC58    -  --------->ANAC46<---------DAG2                          ----------->GT1       <---------ANAC58   <- <---------LBD16  <----------DOF2            --------->ARR11(3)      --------->WRKY18(1)   ------->GAMYB   ttctccgcctcaaattttccctttatgcctagattctagccttctagggtcttcttgaaaccgtgattttggtcaagaaatggcttcccacaacgaaaac  6049100                                                                          <---------ANAC46                                                                          <---------ANAC58            <---------ANAC58                                     <------ZmHOX2a(1)            <---------ANAC58                                   --------->LBD16  <----------TaMYB80                                          <-----------RAV1(2) --------->ARR11(3)                 --------->TOE1(1)         --------->HSFB2a(2) <---------ARR11(3)                 --------->TOE2(1)         <---------HSFB2a(2) -------->YAB1                 <---------ICU4                 <---------LBD16 --------YAB1                 <---------ATHB12       <----------DOF2      <---------ANAC58         --   gatgatattcccatgcttccgatttcagacccatcatctcgtactagagccagagctttcacttccaggagtcgtagcgtttctctctcaaaccctactt  6049200                                                 ------>ZmHOX2a(1)                                          --------->ANAC46                                         <---------LBD16                  <---------MYB52(1)                                        <---------ALFIN1                 <----------DOF2              <-----------GT1          <---------REM1(2)              ------>ZmHOX2a(1)             -             ----------->HVH21         <---------ZAT14           <---------TGA1a                   <-          <---------ARR14(2)      <---------TOE2(3)--------------------->WRI1              --------->PCF5          --------->ARR14(2)  =============================================bZIP_DOF     --------->ALFIN1         <------ZmHOX2a(1)    <----------DOF2<---------ARR14(2)  --------->TGA1a     --------->ATHB12 ---->ZmHOX2a(1)         <-----------RAV1(1) --------->ARR14(2)  ===================bZIP_DOF  ------>ZmHOX2a(1)   cctccattgaaggatttgacacttccactgtggttttaggctacacgggtcctcttcgaactcagagacgtcctcctttagttcaaatgagtggtcctct  6049300                                                       <------MYB46(1)                                                       <------MYB83                           <------             --------->YAB1                           <---------AtMYB61                    <---------At4g35610           --------->ANAC58                          <---------MYB52(1)                <----------DOF2           --------->ANAC58                         <-------GAMYB                   ------>ZmHOX2a(1)       --------->ANAC58                            <---------ANAC58             --------->ARR14(2)       --------->ANAC46                            <---------ANAC58             <---------ARR14(2)       --------->ANAC58                      <---------YAB1                    <---------GLK1(1)    <---------REM1(2)                  ------>ZmHOX2a(1)                       --------->GLK1(1) -------->ZAT6    ------->TEIL   ------>ZmHOX2a(1) <---------ANAC46   ----------->RAV1(2) <---------- ----------------AGL1    <----------DOF2   <---------At4g35610        ===============================   tacctctactcgcaagcatgaacctctctttcttcctcatccttcttctgattccgttggtgtctcttctcagcctgagaggtatccttcttttgctgct  6049400  Previous    Next  AGI:  At3g17690.1    Description:  ATCNGC19 (cyclic nucleotide gated channel 19); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Putative cyclic nucleotide-gated ion channel 19 (CNGC19) [Arabidopsis Thaliana] (GB:Q9LDR2); similar to CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G17700.1); similar to hypothetical protein OsI_021325 [Oryza sativa (indica cultivar-group)] (GB:EAZ00093.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63236.1); similar to cyclic nucleotide gated channel [Malus x domestica] (GB:BAF95185.1); contains InterPro doma Range:  from: 6045008    to: 6048494    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g17700.1    Description:  CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Probable cyclic nucleotide-gated ion channel 20, chloroplast precursor (CNGC20) [Arabidopsis Thaliana] (GB:Q9LD37); similar to ATCNGC19 (cyclic nucleotide gated channel 19), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G17690.1); similar to hypothetical protein OsI_021325 [Oryza sativa (indica cultivar-group)] (GB:EAZ00093.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63236.1); similar to cyclic nucleotide gated channel [Malus x domestica] (GB:BAF95185.1); Range:  from: 6048922    to: 6052558    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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