Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                  <---------WOX13(1)         <-----------HVH21    <--                                    <---------ALFIN1         <---------TOE2(3)   <---------At4g35610                              <-----------GT1   --------->ATHB12          <----------DOF2--------->YAB1 --------MYB111(1)      <---------At4g35610     <---------MYB46(3)   <-----------GT1     --------->TOE2(3) ------->MYB46(3)       <---------ZAT2--------->ANAC46   <----------DOF2<---------DAG2  ----------->GT1 ----GT1                --------->At4g35610    <---------ATHB12<------ZmHOX2a(1) --------->At4g35610   aactactctattgaagtcttgcagtcagcttataacctccacataaccagtgattggaactttgaggaaaatcactctttgtcaactccaatgttaaatt  6002400                                                                                 ------>ZmHOX2a(1)                                                                                --------->TOE2(3)                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             <---------ARR11(3)                                                                             --------->ARR11(3)                                                                             --------->ARR14(2)                                                                             <---------ARR14(2)                                                                          ------>ZmHOX2a(1)                                                                        ------>ZmHOX2a(2)                                                                        ================HOX2a_HOX2a              --------->TOE2(3)                                        =================HOX2a_HOX2a         --------->MYB46(3)             ---------->ID1                 <------ZmHOX2a(2)         <---------MYB52(2)     --------->AHL20(2)                    --------->ARR14(2)    --------->TOE2(3)           <---------AHL20(1)                    --------->ARR11(3)         ---- -AHL20(2)------->GAMYB   <----------DOF2                             <---------ARR14(2)         ---- ---------GT1--------->YAB1     <---------AHL20(2)                    <---------ARR11(3)       <-----   ctactatctcaacaaacatcagttcattctttattttattttgttttttttcaaaaaacaaaccaaaatatagatcctagatcctaaaacttccaaacca  6002500                                                                                 <---------ANAC55(2)        <----------DOF2                                                          --------->ANAC55(2)     --------->ARR11(3)--------->AHL20(1)                                     <---------MYB52(1)     <---------ARR11(3)--------->ARR11(3)                                   ----------->GT1     --------->GLK1(2) <---------ARR11(3)                               ------>MYB46(1)    --------->RVE1(1)  <---------AHL20(1)    --------->LBD16            ------>MYB83    --------->MYB52(1) -->MYB83        ----------->GT1             ------------>CBF           --------->MYB52(1)          - -->MYB46(1)<---------ANAC58             --------->ARR14(2)           <---------MYB59 <---------WOX13(1) ----MYB59  <---------ANAC58           ---------->DOF2                --------->AtMYB61 <-----------GT1   aactaaaaatcttttcgagcggaaatatttttaaaaatccaaaaatccccaatttcaaaaatcggaccgaaaccaaaccggttaagtgattaactgaatg  6002600                                          <----------DOF2                                       -----                                        ------->TEIL                                            <----                                   --------->MYB52(1)           <---------DAG2                  <----           ---------->DOF2 --------->HSFB2a(2)       ---------->DOF2                            ----- ----->ZmHOX2a(1)          <---------HSFB2a(2)---------->DOF2   <----------DOF2            ----------   tcctactctagttcaaagaagagagacttcaagaagctaatggacttttaaagaaaaaagaatgggctttttgtaaacaaactatatcaaactttcaata  6002700                                                                              <---------ANAC55(2)                                                                              ----------->GT1        --------->GLK1(1)                                                     --------->ANAC55(2)       --------->ARR14(2)                                                   --------->ZAT14    --------->ETT(1)                 <------------CBF                       <---------ZAT14 ---->AHL20(1)                      >>>>>>>>>EIN3                     --------->MYB52(1) -----AHL20(2)                     <-------TEIL                    --------->ZAT2         ---------->DOF2 -----AHL20(1)               <---------AHL20(2)                    <---------At4g35610 --------->YAB1 ---->AHL20(2)              <---------AHL20(2)                 ------>ZmHOX2a(1)   --------->ICU4 -->CBF<---------ARR14(2)   --------->AHL20(2)      --------->ANAC46  -------->P  ------------>CBF --   aaatggtcggatttgtaactgatgccctaattttatatacattgattccctcatacgctgtcttcctcgagctaccagttcagtaacaatgagaaagacg  6002800                    --------->ANAC58                    --------->ANAC55(1)                    --------->ANAC58                    --------->ANAC46                  --------->ANAC46            ------>ZmHOX2a(2)           --------->HSFC1(2)           <------ZmHOX2a(2)           --------->HSFB2a(1)           <---------HSFB2a(1)          <---------ARR11(1)                                                                      ---          --------->ARR11(3)                                                                      ---          --------->ARR14(2)                                                                     <---          <---------ARR11(3)                                                                     ----          <---------ARR14(2)                                                        --------->ANAC58          <-----------ARR10                                                         --------->ANAC58         <---------CCA1(2)     ----------->GT1     --------->DEAR3(2)               --------->AtLEC2         <---------ARR14(1)  --------->GLK1(2)   <---------ARR14(2)        <---------ANAC58    <-----      <---------LBD16       <---------GLK1(2)    --------->ARR14(2)        <---------ANAC58  <------- --------->GT1  <---------ALFIN1   --------->GLK1(1)<---------ETT(1)---------->DOF2 --------->ANAC46   atggtgatttcggatcttccacacgaaatagaatcggaaatactctctagggttccgaccaagtctctagcaaagttgcatactacatgcaaacgatggt  6002900                      <---------ANAC58                      <---------ANAC58                      <---------ANAC46                     <-------TEIL                    --------->GLK1(2)             <------ZmHOX2a(2)             --------->CCA1(2)                                                                      -            <---------ARR11(3)                                                                      <            --------->ARR11(3)                                                                     --            --------->ARR14(2)                                                                     <-            <---------ARR14(2)                                                                     <- <---------DAG2    <---------GLK1(2)                                                         -------- <----------DOF2   --------->ARR14(2)                                                       <-------- ------>ANAC58     <---------ARR14(2)           ---------->DOF2                            <--------- ------>ANAC58------>ZmHOX2a(2)       ----------->GT1    <-------TEIL                  <---------AHL20(2) ------ZAT18--------->AGP1         <----------DOF2      <--------P                     --------->AHL20(2) ----->SPL7--------->GLK1(1)    --------->ARR11(3)     <-------GAMYB----------->GT1   --------->AHL20(2) ----SPL7  <---------GLK1(1) >>>>>>>>>TBF1   --------->YAB1<---------TOE2(3)   <---------ANAC46    -- --------AtSPL8 --------->LBD16 <---------ARR11(3)    <---------MYB46(3)      ---------->ID1---------   acgctttattcagagatccgagattcgtgaagaagaactttggtaaatcagaaaggaggttgatgttacatagtaatttcggcgtttataaaattaccga  6003000    <---------AtLEC2                                                         --------->ARR14(2) ------>ZmHOX2a(2)                                                           <---------ARR14(2) -------->GLK1(1)                                                            --------->ARR11(3) ------ZmHOX2a(2)                                                            <---------ARR11(3) ------->ARR11(3)                                                   --------->CCA1(2) --------ARR14(2)      --------->At5g28300                          --------->GLK1(1) --------ARR11(3)    <---------DEAR3(1)                             <---------GLK1(1) ->DEAR3(2)         --------->At4g35610                      --------->TOE2(3)                <------ -At5g28300        ------->GAMYB              --------->ANAC58     <---------ARR11(3)         ------- --GT1    <---------GLK1(1)    <---------CCA1(2)           -------->P      ----------->ARR10  ------- ------->ARR14(2) --------->MYB46(3)          --------->ANAC58     --------->ARR11(3)     --------->TOE2(3) >MYB52(1)--------->GLK1(1) ------>ZmHOX2a(2) --------->ANAC46 ---------->DOF2--------->CCA1(2)   cgatctccatggaattctcaacagcggtgatccatctctcgagtttacaagtaaacttagcaacctaaagatatcagaagatttgacaataaccaaaatc  6003100         ----------->GT1                                                                       <-----        <---------ANAC46                                                         --------->ALFIN1     ----------->TGA1                                                        <-----------RAV1(2) ----     ----------->HVH21                                                  <---------WRKY12       ------    <-----------HVH21                                                   <---------WRKY38(1)   ------- <---------At5g28300             <------ZmHOX2a(1)                --------->MYB52(1) <------ZmHOX2a(2) ---ARR11(3)                   <---------TOE2(3) <---------MYB52(1)    --------->WRKY18(1)    ------- -->ARR11(3)           --------->ANAC46   --------->ZAT14         ------->TEIL --------->ZAT2-------- -->GLK1(2)          <---------YAB1   --------->ZAT6<---------ANAC46  <-----------HVH21      --------   tttcactgtgacggtttaatattatgctccactaaggaaaacactagactcgttgtttggaacccatgtaccggtcaaaccaggtggatcaaacccagca  6003200      <---------ZAT14              --------->TOE2(3)   <---------At5g28300            --------->ANAC55(1)                              <----------DOF2   <---------DOF5.7(2)            --------->ANAC58                                <---------ANAC58 --------->DOF5.7(2)              --------->ANAC55(2)                             <---------ANAC46 ----MYB52(2) --------->ATHB12    <---------ANAC55(2)                             <---------ANAC58 ----->MYB52(1)                   --------->ANAC58                        <---------TOE2(3) --->MYB46(3)<---------YAB1      <-------TEIL                       --------->GLK1(2) -->At4g35610--------->ICU4      <-----------------------TaNAC69(2) --------->ARR11(3) -->ZAT2   --------->YAB1      --------->ARR14(2)                   <---------ARR14(3)         ------ ->ANAC58 --------->ICU4       <---------ARR14(2)                   --------->ARR14(3)        <------ ->ANAC58 <---------ZAT6  <---------ANAC46                          <---------ARR11(3)        -------   aacgttaccgtagtgatgattcgtattgtcttggatacgtaaacagcaagtcttcttaccacaactacaaaatcttgaggtattgcttttattacaacga  6003300  Previous    Next  AGI:  At3g17540.1    Description:  F-box family protein. Identical to Putative F-box/Kelch-repeat protein At3g17540 [Arabidopsis Thaliana] (GB:Q9LUP4); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G17530.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60955.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 6002789    to: 6003979    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version