Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------ANAC58                                                                  <---------ANAC55(2)                                                                  --------->ANAC55(2)                                                                --------->CCA1(2)                                                               --------->ARR14(2)                                                          <---------DEAR3(1)                                                          ------>ZmHOX2a(2)                         <                    <---------YAB1                       <------ZmHOX2a(2)                         --       <---------AHL20(2)                               --------->ARR14(2)                        <--       --------->AHL20(1)                    ===================HOX2a_HOX2a              ------->GAMYB       --------->AHL20(2)                    ====================HOX2a_HOX2a          <-----------GT1      --------->AHL20(2)     --------->CCA1(2)          <---------ARR14(2)            --------->MYB52(1) ----------->GT1  --------->YAB1             <------ZmHOX2a(1) <---------ARR14(2)   <---------AHL20(2) -------->DOF2   --------->ICU4     --------->GLK1(2) ----------->ARR10<---------ANAC58<---------At5g28300   gaaaagaaaaaaattagaaatgatgatagagagatgggaacctgtaaggagaagttgagatcggcgatacgagacttgtcgatgattttaacggcgaagg  5992500             <---------ARR11(3)           --------->At5g28300          ----------->GT1      <---------ARR14(2)                                          <---------STY1(2)      --------->ARR14(2)                                          --------->STY1(2)    --------->LBD16                                     <---------ZAT18                           ---  <---------LBD16                                       --------->ZAT18            --------->ANAC58 --------->MYB52(1)                       <-----------GT1   ------>ZmHOX2a(1) --------->LBD16     --- ---------WRKY18(1)            <----------DOF2      ------>NtERF2 <---------ZAT2   --------->ANAC58 --------->HVH21            <-----------GT1<---------At5g28300    --------->ZAT2----------->HVH21---- -------KAN4(2) <----------DOF2<---------DAG2      --------->DEAR3(1)    --------->GLK1(1)      <----   aatgaccggagacggtatctttagcgaatttaactttaccgaaattaccctcgccgagcgtcctccctagctcgtatttccccagacgcattcccttctc  5992600                                                                     --------->MYB52(1)                                                     <---------AHL20(2)          ------>MYB83                                    --------->WOX13(1)  <-----------GT1        --------->AtMYB61          ------>ZmHOX2a(1)       <---------ATHB12  <---------AHL20(1)         ------->GAMYB --->NtERF2                  ------>MYB46(1)        --------->AHL20(2)       --------->ANAC58 ------>LBD16                ------>MYB83           --------->AHL20(1)       --------->ANAC58      -- ----->ANAC46           <-----------GT1    ------>ZmHOX2a(1) ----------->RAV1(1) ------>MYB46(1)  <-- -----LBD16  ------>ZmHOX2a(1)  --------->WOX13(1)  <---------AHL20(2)  ------->GAMYB  <---------GLK1(1)   cgccttcttctcctcctcttgccttctcaccatccaatcaatctcctatttcaatttatttcccaacaaattaacagacaaccaaatcgatttctcgctt  5992700                                                                                                   --                                                                                                   <-                                                                                                 <---                                                                                                 ----                                                               --------->ZAT14                 <-----                            <---------MYB52(1)                 <---------ZAT14                 ------                           <-------GAMYB                      --------->ALFIN1               <-------                          <---------ANAC55(2)             --------->At4g35610                --------                          --------->ANAC55(2)             <---------At4g35610            --------->CCA1(2)                     <---------ICU4                   <---------REM1(1)                 <---------ARR11(3) ----->TEIL         --------->AHL20(2)               <---------YAB1                     --------->ARR11(3) -------CCA1(2) <---------YAB1    ---------->DOF2 <---------YAB1   <---------MYB52(1)<------ZmHOX2a(1)   gaatcttccgattagattactattaattccgttattgaaagaggggaagtagattattgtagctgtgcaggtatgtgtgtgagggaaggagatatatata  5992800     --------->AHL20(2)     <---------AHL20(2)   --------->AHL20(2)   <---------AHL20(2) <---------AHL20(2) --------->AHL20(2)                                                   <-------GAMYB ------->AHL20(2)       <----------ID1                               <---------MYB46(3) --------AHL20(2)   ---------->DOF2            >>>>>>>>>TBF1         <---------DEAR3(2)             < ------AHL20(2)  <------MYB46(1)            ------------------------>ANAC81                   ------- ----->AHL20(2)  <------MYB83      --------->ARR14(2)               --------->ATERF1(2)      <------- ----AHL20(2)   --------->MYB59    <---------ARR14(2)               <---------ATERF1(2)  --------->ANAC58 --->AHL20(2)  <--------P--------->CCA1(2)  >>>>>>>>>TBF1           <---------ANAC46     --------->ANAC58 --AHL20(2)  <---------REM1(1)    --------->ATHB12           ---------->DOF2            --------->ZAT18 ->AHL20(2)  --------->ALFIN1  <------ZmHOX2a(1)  >>>>>>>>>TBF1  --------->ALFIN1      <------ZmHOX2a(1)   tatatatatatataggtgtaggtaaagagacgaggaagattgggaagaagaagaagaagagaagaaagtgccggttgaaattgaagagaggacgctactt  5992900                                              --------->AHL20(1)                                              --------->ARR11(3)                              <------                                              <---------ARR11(3)                             --------                                             ----------->TBP                                <--------                        <---------AHL20(1) <---------AHL20(2)                               <--------                        --------->AHL20(1) --------->AHL20(2)                              <---------                       --------->YAB1  --------->AHL20(2)                                <---------RVE1(1)         ------>ZmHOX2a(1)   <-----------GT1 <---------AHL20(2)  <---------AHL20(2)     <---------ARR14(2)     <-----------GT1   --------->AHL20(2)<-----------TBP--------->DOF5.7(2)             --------->ARR14(2) ----------DOF2    <---------YAB1  <----------DOF2      <---------MYB52(1)              <---------ARR11(3) -->REM1(1)       *TSS<---------YAB1 <-----------TBP ------>ZmHOX2a(1)   <------------------------ANAC81 -----------------ANAC81<---------AHL20(2) <-----------TBP<---------DOF5.7(2)           <---------GLK1(2)   ctctttgtttcctcttctcttcttattatattcacttctttttatatatatattcctcgttaactatttttttttggtttttgttagccagatttttatt  5993000                                                                                              <------                                                                                            <--------                                                                                   <---------AHL20(2)                                                                                 <---------RVE1(1) ------CBF                                                                      --------->ARR11(3) ->ATHB12                 ---------->DOF2                                       <---------ARR11(3) -YAB1             <---------ICU4             --------->MYB46(3)                <---------GLK1(2) -AHL20(2)         --------->YAB1             <---------MYB52(2)   <---------YAB1<---------CCA1(1) --TBP     --------->AHL20(1)   ---------->DOF2             --------->CCA1(2) <---------TOE2(3)   ggataactagaaacatattaatcttcacaaaagaaaaagattaatctaacaaaccatataagatttgatattatcgaaataagatttttttagtagggta  5993100                                                                                       ------>ZmHOX2a(2)                                                                                     <-----------ARR10                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                     <<<<<<<<<<WRKY38                                                <---------ARR11(3)                     <<<<<<<<<<WRKY43                                                --------->ARR11(3)                     <<<<<<<<<<WRKY26                                           ---------->DOF2               --------->ATHB51                                      ========================HOX2a_HOX2a               --------->ATHB12                                      =========================HOX2a_HOX2a            <---------ICU4                                           <------ZmHOX2a(1)<------ZmHOX2a(2)            --------->YAB1                                          ----------->GT1 <------ZmHOX2a(1)        --------->AHL20(2)                      <---------ICU4 --------->YAB1--------->AHL20(2) ---ZAT18  <---------YAB1                      --------->ICU4 <---------YAB1 <---------AHL20(2) -------AtSPL8<---------YAB1       ------>ZmHOX2a(1)       <-------TEIL     --------->AHL20(2)    <--   cttatcgagatttattattattggtcaaataaaactcctatcaaatgaaattatgtctatgttcattataaggagaaatttaaaaaggatcttatttctg  5993200                                 <---------ARR14(2)                          ---------->DOF2             ----------->GT1     --------->ARR11(3)      <---------------AGL15      --------->ARR14(2)      --------------->AGL15   ----------->GT1                                <---------ARR14(2)     -     --------->YAB1    --------->ANAC58                                      --------->ARR14(2)   ---    <<<<<<<<<ARR2      --------->ANAC46                                      --------->GLK1(2)    <--    <---------ATHB12   --------->ANAC58            <--------ATHB1         <---------ANAC46        ---  --------->WOX13(1) --------->CCA1(2)             <---------ICU4   ------->TEIL                  <-- --------->MYB46(3) <---------ARR14(2)       --------->YAB1      ----------->GT1                ----- -------ETT(2)      --------->ARR14(2)--------->ATHB12           <---------ANAC46         <---------AHL20(2)   tcaacaatcaaaatatggaaaatatacgcaaagagtatattgatttatcagaataattctatatatgatgtatattgcgaatatgtgtgtattttatgtg  5993300                              <-----------RAV1(1)                              <---------MYB46(3)                              --------->MYB52(2)                        <-----------TGA1                        <-----------HVH21                       <---------O2                                                      <---------ARR11(3)                       --------->O2                                                      --------->ARR11(3)                       --------->ANAC46                                            --------->YAB1                       --------->TGA1a                                            <-------TEIL                       --------->ANAC58                                       <---------AHL20(1)                       --------->ANAC55(1)                     -------->HAHB4 --------->AHL20(1)                       --------->ANAC58                        --------->YAB1 --------->ARR11(3) ------>TEIL           --------->bZIP60(2)                  --------->YAB1    <---------ARR11(3) ------>ZAT18          <---------TGA1a                     <---------AHL20(2) --------->AHL20(2) -------ZAT18          --------->bZIP60(1)              <---------AHL20(2)    <---------AHL20(2) ------>ZAT14         <-----------STF1                 <---------AHL20(2)  --------->AHL20(2) -------ZAT14        <---------ALFIN1        <---------TOE2(3)<---------YAB1 --------->AHL20(2) ---------->AtSPL8--------->PCF2---------->ID1         --------->AHL20(2)--------->AHL20(2) <--------   tgtacttgtatgcatcaataggcccacgtcatttgttgcattagttttatgttgaaattaaataataatagatgaaaaaatatattcataagaacttttg  5993400  Previous    Next  AGI:  At3g17510.1    Description:  CIPK1 (CBL-INTERACTING PROTEIN KINASE 1); kinase. Identical to CBL-interacting serine/threonine-protein kinase 1 (CIPK1) [Arabidopsis Thaliana] (GB:Q8RWC9;GB:Q3EB49;GB:Q9FUK2;GB:Q9LUP6); similar to CIPK17 (SNF1-RELATED PROTEIN KINASE 3.21), kinase [Arabidopsis thaliana] (TAIR:AT1G48260.1); similar to CBL-interacting protein kinase 1 [Populus trichocarpa] (GB:ABJ91209.1); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contain Range:  from: 5988997    to: 5992918    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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