Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               ---------->DOF2                          <---------YAB1                         --------->TOE2(3)                        <--------HAHB4                        --------->YAB1                                                    --------->ANAC58                        <---------ICU4                                           --------->ANAC58                        -------->ATHB1            --------->ICU4                 --------->ANAC58                 ----------->GT1     --------->GLK1(2)                  --------->At4g35610  --------->AtLEC2      --------->ATHB12          <---------YAB1      --------->YAB1      --------->ANAC46  ------>ZmHOX2a(1)    <---------ATHB12 <----------DOF2              <---------YAB1       --------->ANAC58   attcctgcaaaacagataatggtgaatcattaaaagaacaatcttttgagtgatgactaaatctaattcttatcatcagcattaagcaaaacacgcataa  5972100                                                                   ----------->RAV1(1)                                                                  --------->ANAC58                                                                  --------->ANAC58            --------->ANAC55(1)                                   --------->ANAC46            --------->ANAC46                              <---------ANAC55(2)            --------->YAB1                                <---------ANAC46         <---------ZAT18                                  <---------ANAC58         --------->ZAT18                  <---------AHL20(1)      --------->bZIP60(2)       <---------At4g35610                --------->AHL20(1)   --------->MYB46(3)       --------->At4g35610        --------->TOE2(3)       <---------ANAC58  ----------->GT1       <---------ZAT18--------->AHL20(2) --------->AHL20(2)  --------->ARR14(2) ------>ZmHOX2a(1)--------->YAB1  --------->TOE1(3)       --------->ANAC55(2)                    <---   atcctattgagcacacataatcaaaaaattccaaaaccctaaaatatatatcacagtgtttcgtaaccacgacagagatagttagaaaattgaacaagag  5972200                                                                                                    <                                                                                                   --                                                                                                  ---                                                      ------>ZmHOX2a(2)                          <---                                                    ------->TEIL                                 <---                                                    <---------ARR11(3)                           ----                                        <---------ARR14(2)                                      -----                                        --------->ARR14(2)                                      <----                                     --------->ANAC55(2)                                       ------                            --------->ARR14(2)      --------->ARR11(3)                         <-----                            <---------ARR14(2)      <---------AGP1                           <-------                         --------->ANAC58<---------GLK1(1)                                  <--------               --------->ANAC46      --------->ANAC58<---------At4g35610                    <--------               --------->ANAC58      --------->ANAC58<---------GLK1(1)                      ---------            --------->TOE1(2)        <---------ANAC55(2)--------->At4g35610                 ---------            --------->TOE2(2)       <---------LBD16 <---------ARR14(2)                 --------->ANAC46    ----------->GT1      --------->ANAC58--------->GLK1(1)         <---------RAP2.3(3) --------->ANAC58 ---ZmHOX2a(1) --------->ANAC58  <-----------HVH21  --------->ARR14(2)                 --------->ANAC58   gataacatgtaaaacatacgcgagggctcggaaatggtcacggatttcgccatggatctgctccaattgagggctcatggggagattagaagccatgtcg  5972300 ------NtERF2 ------->LBD16 ------>DEAR3(1) ------LBD16                             <-----------HVH21 ---NtERF2                               <-----------TGA1 ----->ATERF1(1)                        --------->bZIP60(2) ->NtERF2                               --------->ANAC55(2) -----RAP2.3(1)                         <---------bZIP60(1) --->ETT(2)                             --------->bZIP60(1) ----DEAR3(1)              <-----------GT1       ------->TEIL                    --------->TOE1(3) ----HVH21      --------->TOE1(2)       --------->ANAC58                         --------->TOE2(3) ---RAV1(1)  <---------ARR14(2)         <---------ANAC55(2)           --------->AHL20(2) -O2         --------->ARR14(2)         --------->ANAC58              <---------AHL20(2) >bZIP60(2)  --------->GLK1(2)          --------->ANAC46             --------->AHL20(2) >O2        <---------GLK1(2)          <-----------STF1   <-----------GT1  --------->AHL20(2)   ccggagacaattcagaatccgacgaaaatttacccaaaaactacgtcactgcatctaaaatttccctccaatttaaattaaaaccctaattagacaaaaa  5972400                                                                                                =====                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                =====                                                                                                -----                                                                                                <----                                                                                               >>>>>>                                                                                              <------                                                                                         <---------At4g35610                                                                     ------------------------>ANAC81<                 --------->DAG2                                      --------->MYB52(1)  --------->At4g35610                ---------->DOF2                              --------->ANAC58            --------->ZAT2             <---------------AGL15                           <----------ID1   --------->DAG2 <-------             --------------->AGL15                           --------->ANAC58--------->DAG2 <--------            ----------------->AGL3                     ---------->DOF2      =========================            ----------------->AGL1               --------->ANAC58  <---------MYB52(2)    <---------ZAT2            ----------------->AGL2               --------->ANAC58====================================        --------->ARR11(3)                       --------->ANAC46---------->DOF2  ===================        <---------ARR11(3)   ---------->DOF2---------->DOF2<------ZmHOX2a(1)---------->DOF2---------- ----------->GT1XXXXXXXXXXXXXXXXXXXXX>MIR2936   ------------------------>ANAC81   ---------->DOF2 ---   ctgaagttaaaatctccaaaaagagaaaacacaaaggagaatgaatgaaagacgaaacaaaggacgacaaagaacgggaaaagggaaagagagctgtcag  5972500   <-------GAMYB ==========MYC_MYB -----At4g35610 -----TGA1a                                                                      <---------GLK1(1) ---->TGA1a                                                                      --------->GLK1(1) ---->At4g35610                                                      <---------AHL20(2)         <---- =========================bZIP_DOF                                   --------->AHL20(2)         ----- ---->O2                                                         <---------AHL20(1)      <---------MYB46(3) -----O2                                                         --------->AHL20(1)      ----------->GT1 >GRF7                                                           --------->AHL20(2)      --------->MYB46(2) -----RAV1(2)                                                    <---------AHL20(2)      --------->MYB52(2) ---------ANAC46                                                <---------AHL20(2)      <---------MYB55(1) --MYB52(1)                                                     --------->AHL20(2)   --------->MYB59 ---HVH21    ---------->ID1                                  <---------AHL20(2) <---------ARR14(2) =====bZIP_DOF                      <---------AHL20(2)       --------->AHL20(2) <---------GLK1(2) =====bZIP_DOF                    <---------AHL20(2)        --------->AHL20(2)  --------->ARR11(3) =====bZIP_DOF     <---------AHL20(2)                     --------->YAB1        --------->ARR14(2) ->HVH21*TSS<-----------GT1      --------->AHL20(1)     <---------WOX13(1)      <---------ARR11(3)  - ------>ALFIN1 <----------DOF2   <---------AHL20(1)   --------->ATHB12  ---------->DOF2<---------MYB52(1)   gtgtgtgttgtttttttcttttttattcaaacatatatattttttaaaaacaaaattgattaataaataaattaaaaagacagatattcggtagttaaaa  5972600                  <---------DAG2             --------->ATERF1(1)             <------NtERF2                                      --------->ZAT6            ------>NtERF2--------->PCF2              --------->ATHB51            <---------ATERF1(1)                      <---------ICU4                   <----------DOF2           --------->RAP2.3(2)                      --------->AHL20(2)           -------->HAHB4          --------->ATERF1(1)                    --------->AHL20(2)              --------->YAB1          --------->RAP2.3(1)            <---------MYB46(3)  <----------DOF2  ------>MYB83   <-------         <---------ATERF1(1)            <---------MYB52(1)<-----------GT1     ------>MYB46(1)--------        <---------DEAR3(1)         <---------ARR14(2)--------->AHL20(2)     <---------MYB59  <------- -----AHL20(2) ------>NtERF2       --------->ARR14(2)<---------AHL20(2)    --------->ANAC55(2) ---->AHL20(2)--------->DEAR3(1)  <---------GLK1(1) <---------AHL20(2)     --------->ANAC46 --------- ---------->HVH21 <----------DOF2 <---------CCA1(2) <---------AHL20(1)   <-----------GT1<---------YAB1   aaatgacagcgaggcgccaactttttggtcccatccatatccgttgttagataaattatttcactttcactaatttcacctaataatactttgattatat  5972700                                          --------->CCA1(2)                                        <------ZmHOX2a(1)                                      <---------TOE1(3)                                      <---------TOE2(3)       ----------->RAV1(1)         <---------AHL20(2)                                               - --AHL20(2)                     <---------AHL20(1)                                       --------->ZAT6 ->AHL20(1)                     --------->ARR11(3)                           <---------MYB52(1)     < --AHL20(1)                     --------->AHL20(1)                          --------->TOE2(3)      <- >AHL20(2)        --------->YAB1<---------ARR11(3)                 <---------ZAT6   <---------REM1(1)   tcttctagccaacaaaattttcatatttttcgaatattttaaggatacaatgctagaattcaaaatacagtgttacttcgttagaattgtagcactaact  5972800                                                                   --------->GLK1(2)                                                                  <---------ARR14(2)                                                                  <---------GLK1(2)                                                                  --------->ARR14(2)                            --------->ARR11(3)             --------->DOF5.7(2)                  <---------ICU4                         --------->ANAC46                 <---------YAB1                         <---------TOE1(3)             <---------ARR11(3)                        <---------DOF5.7(2)             --------->ARR11(3)                       <---------WRKY12    <-----------TGA1       <------ZmHOX2a(1)          <---------WRKY38(1)    <-----------HVH21     --------->ICU4             --------->DOF5.7(2) -------->YAB1<------ZmHOX2a(2) <---------TOE2(3)   <-----------HVH21                          ------ ---------ICU4====================HOX2a_HOX2a      --------->DEAR3(1)                 ------>ZmHOX2a(1) --------ATHB12--------->YAB1<------ZmHOX2a(2)   <---------At5g28300    --------->AtLEC2 ------>ZmHOX2a(1)   aatcatcgtcactaagatcatcatcgtaaggatcaaggttgtcttcaccttcaccgtcaacgttaccagattccatgtaaaacttctcctcctcttcctc  5972900                                                              <-----------GT1                                                             --------->AHL20(2)       <---------AHL20(2)                                                      --------->REM1(1)              --------->AHL20(2)                                    ------->PIF5 ------>ZmHOX2a(1)                --------->YAB1                                    --------->LBD16 ------>ZmHOX2a(1)      <-----------GT1                      --------->ZAT14         <---------ATERF1(1)      <---------AHL20(2)         <---------ARR11(3)         <-------PIF5<---------ALFIN1      --------->AHL20(2) >ZmHOX2a(1)          <---------ZAT14   ---------->DOF2     <---------ATHB12   <----------DOF2   atcgtcttcatggtcttccttctctgctctgtcttccccgtgcaaagcctcctccttcaccaataaactacatttattagccttttataaaatcactgga  5973000  Previous    Next  AGI:  At3g17440.1    Description:  NPSN13 (novel plant SNARE 13). Identical to Novel plant SNARE 13 (NPSN13) [Arabidopsis Thaliana] (GB:Q9LRP1); similar to ATNPSN12 (novel plant SNARE 12), protein transporter [Arabidopsis thaliana] (TAIR:AT1G48240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70926.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) Range:  from: 5969571    to: 5972508    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g17450.1    Description:  hAT dimerisation domain-containing protein. similar to hAT dimerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G22220.2); similar to hAT dimerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G22220.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAB39405.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75144.1); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain Protein of unknown function DUF1544 (InterPro:IPR011523); contains InterPro domain Protein of unknown function DUF659 (InterPro:IPR007021); contains InterPro domain HAT dim Range:  from: 5972677    to: 5976124    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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