Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->MYB46(3)                       >>>>>>>ZML2<---------ALFIN1                    --------->ARR11(3)            --------->At5g28300 <------ZmHOX2a(2)                                    <---------AHL20(2)    <---------------AGL15      --------->ARR14(2)                     --------->ANAC58   ----------------->AGL1   <-------TEIL      <---------ZAT18         --------->ANAC58 --ANAC46<---------LBD16<---------TOE1(2)     --------->ZAT18         --------->ANAC46--------->ATHB12   gatgtcccattcgcggtaagaagttctaggttcgatccacctagtttgcccactataagggttccaaactacaagcctagagtttatttcattggtgatg  5916300                                                               --------->MYB59                                                           <---------MYB46(3)                                                        --------->MYB52(1)                                                        ------------>AtMYB77                                                      --------->At4g35610          --------->AtMYB61                          --------->ANAC58         --------->MYB46(3)                          --------->ANAC58        >>>>>>>>>>MYB80                       --------->YAB1 <---------MYB52(1)        <----------DOF2      ------->GAMYB--------->YAB1  <-----------GT1 <------ZmHOX2a(2)                   <---------DAG2     <---------MYB52(2)        <---------ARR11(3) --------->ARR14(2)            <----------DOF2     --------->MYB46(3)        --------->ARR11(3) <---------ARR14(2)           <---------DAG2  <----------ID1  <---------ZAT6--------->CCA1(2)<------ZmHOX2a(1)          <-----------GT1   cataacaacaaaccatcgcagtgataaacttgagatataactattctatcaggatcagcaacggttaggctaataagtttacctttctgctttatagatg  5916400                                                                             --------->ANAC58                                                                      <---------ICU4                                                                     --------->ICU4                                                      --------->HSFB2a(2)    --------->ANAC58                                             --------->At4g35610     <---------YAB1             <----                                             <---------At4g35610 <-----------TGA1          <---------                                           <-----------RAV1(2)  --------->bZIP60(2)  <----------DOF2                    --------->GLK1(1)     <---------At4g35610   --------->ANAC46------->TEIL    <----             <----------DOF2    <---------WOX13(1)    <---------HSFB2a(2)------>ZmHOX2a(2) <---------DAG2   attcaacgttttcgtctttgtgaattccatctagattgacgctcatcagatgaagtctagaattcaacgtcatgatcgcatgaaactctttcacttttgc  5916500                     <---------GLK1(2)                    <---------At4g35610                    --------->At4g35610                ------>MYB83           <---------WRKY18(1)                            <---------ALFIN1        <---------ANAC58      ---------->DOF2             --------------->AGL15        XXXXXXXXXXXXXXXXXXXX>MIR3440B-5P             --------->ALFIN1   <----------DOF2--------->YAB1                 ---------->DOF2                        <---------TOE2(3)   <---------DAG2<---------ATHB12            <------MYB83<-----------------AGL1         <---------TOE2(2) -----ANAC58    ------>MYB46(1)              <------MYB46(1)                            <---------TOE1(2) -DOF2  <---------ANAC58 <----------DOF2     ----------->GT1 <---------DAG2         <----------DOF2 -----ANAC58   --------->WOX13(1)         <---------MYB52(1) <----------DOF2--------->YAB1    <------   ttcggctttttcttgaccaatcagcttctttgtaaagcttctacgtttggttaaagtgttccactttttgcaagtgaatcgtattgctcttaggtatgtc  5916600                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         <---------ARR14(2)                                  --------->LBD16                        ------>NtERF2<------ZmHOX2a(1)                     ------>ZmHOX2a(1)   <---------ARR11(3)                     ============================HOX2a_HOX2a                  --------->AHL20(2)                     <---------At4g35610 --------->ARR11(3)                  <---------ATHB12                     --------->At4g35610 --------->ARR14(2)                --------->WOX13(1)                     =============================HOX2a_HOX2a            <------ZmHOX2a(2)      <----                 <---------ALFIN1--------->LBD16                         ------------>CBF  <------MYB46(1)             <---------ZAT18 <---------ARR14(2)       <-----------TGA1  <---------ARR11(3) <------MYB83  <---------PCF2 --------->DEAR3(1)  =============HOX2a_HOX2a           --------->ARR11(3)--------->MYB59 -----HVH21  --------->ZAT18 --------->ARR14(2)    <-----------GT1  ---------->DOF2----------->GT1<--   actgggaccctagagagcacctcctctgccaaatcccgaggaagatcggaaattttcgtcattgttttaacaaagatcaatgaaatggaaattaggtcgt  5916700                                                                       <<<<<<<<<AtERF-4                                                                       ------>NtERF2                                                                       <<<<<<<<<AtERF-3                                                                      <---------RAP2.3(2)                                                                      <---------RAP2.3(3)                                <---------TOE1(3)                     <---------RAP2.6(2)                           --------->ATHB12                           <---------DEAR3(1)                           <---------MYB46(3)      ------------>CBF  --------->RAP2.6(3)                  --------->ANAC58            --------->ANAC58     ----------->HVH21                  --------->ANAC58            --------->ANAC58   <XXXXXXXXXXXXXXXXXXXXMIR171A         --------->YAB1   <---------YAB1      --------->ANAC46 <------------CBF    ------------>CBF    ----------->GT1     <---------ALFIN1 <---------AHL20(2) -----YAB1        --------->ANAC46    <-----------GT1    <----------DOF2                <-----------GT1 ----------CBF <---------WRKY12 <---------TOE2(3)<----------DOF2 <XXXXXXXXXXXXXXXXXXXXMIR170       <-   cattgtttcaataagggtaaacgaaatggtgattagggttttacttccacgctttcaatcttttatattgtgacggctcagtcaaataagttactcgctc  5916800                                                                                                  ---                                                                                                  ---                                      --------->HSFC1(2)                                         <---                                     <---------ARR14(2)                                          ----                                     --------->ARR14(2)                                         -----                                    <---------CCA1(2)                                           -----                                   --------->LBD16                                              -----                                  --------->ANAC58                                             ------                                  <---------ANAC55(2)                                        <------NtERF2                                  ----------->GT1                                          --------->ANAC58                                  --------->ANAC55(1)                                      --------->ANAC46                                  --------->ANAC55(2)                                      --------->ANAC58            <---------HSFB2a(2)   --------->ANAC46                                        <---------LBD16     <---------ANAC58             --------->ANAC58    ------>MYB46(1)             --------->WOX13(1)     <---------ANAC58        ----------->HVH21      <---------MYB59             <---------YAB1-------   <-----------GT1          <------NtERF2   ------>ZmHOX2a(1)                 --------->YAB1------>NtERF2 --------MYB52(1)  --------->GLK1(2)<---------MYB52(1)------>MYB83   <----------DOF2      --------->LBD16   tgttttttcgggcccgagaagactctgggcctcgacccgtaacttcctagataacccaactcaaaactctcctttgcaaattatcattcatccgcgccaa  5916900    --------->YAB1 ---->GAMYB ------>AtMYB61                                                                       --------->ANAC46 ------MYB55(2)                                                                --------->ARR14(2) ----->MYB46(3)                                                                <---------ARR14(2) ->MYB46(1)             --------->HSFB2a(1)                                   <------ZmHOX2a(1)     < ->MYB83                <---------HSFB2a(1)     ---------->DOF2       <---------------AGL15        -- --->P           ---------->DOF2              --------->ANAC46      --------->At4g35610         ----- >NtERF2   --------->ICU4               <------MYB83                <---------At4g35610       <------ -->DEAR3(1)  <---------YAB1            <------MYB46(1)  ---------->ID1 ---------->DOF2<-----------HVH21   ccacaagtataacatgatgaaaaggaacgtttttgatactgtaggtttacgaaagccttgttgtatttgatgctgaaagaggaaacaccagtcacataca  5917000                                             ------>MYB46(1)              --------->ANAC46                                             ------>MYB83                 --------->ANAC58                                          --------->MYB46(3)            ---------->DOF2      <-------                                          --------->DEAR3(2)     ------->GAMYB               <-------                                     --------->ANAC58           <---------MYB52(2)           --------                                     --------->ANAC58           --------->MYB46(3)           --------                                     --------->ANAC55(2)        <---------MYB55(2)          <--------                                     <---------ANAC55(2)        <---------MYB111(2)       --------->YAB1                                     --------->ANAC46         ------>MYB46(1)   --------->AtMYB61                                     --------->ANAC55(1)      ------>MYB83--------->ANAC58--------->WOX13(1)                                   --------->MYB52(1)      --------->ANAC58    <---------MYB55(2) ---------YAB1                  ---------->DOF2            --------->ANAC46    --------->MYB46(3) ------->AHL20(2)             --------->YAB1--------->MYB52(1)----------->RAV1(1) XXXXXXXXXXXXXXXXXXX ---->TOE2(3)                <------ZmHOX2a(2)     <---------AHL20(2)--------->AtMYB61 ----------->RAV1(1) -TEIL              --------->AHL20(2)  <---------ARR14(2) --------->ANAC58   -------->P --------->MYB46(3)   ttaatatagcatgacaaacacataaatttcgatcaaaagacggaaccaactgtttaatcaaacccaacaaaccaaaacgcaaccactggcaacaatcatt  5917100                                                                 <---------MYB55(2)                                                                 --------->MYB46(3)                                                                --------->ANAC46                                                                --------->ANAC58                                                                ------>MYB83                                                                ------>MYB46(1)                                       <---------ATHB12         --------->ANAC58                                      ------>MYB83            --------->AtMYB61                                      ------>MYB46(1)        --------->MYB46(3) --ICU4                              --------->WOX13(1)    <-----------GT1                        <-- -HAHB4                             --------->AtMYB61--------->DAG2                               --- ->ATHB12              <---------ARR14(2)        <---------AHL20(2)                               <-- ->YAB1                --------->ARR14(2)        --------->AHL20(2)                           <------ -ATHB12               <---------GLK1(2)--------->YAB1----------->GT1          --------->ANAC46   --- X>MIR4227 ----------->GT1      --------->MYB46(3) ---------->DOF2   <---------ATHB12   <----------DOF2   tgtccaaactgagacgataaacaaggattctcaaacgaccaatcagaccatttaaaaggtaaaaccacccaatctatacatactcaatctctttctcttt  5917200  Previous    Next  AGI:  At3g17320.1    Description:  F-box family protein. Identical to Putative F-box protein At3g17320 [Arabidopsis Thaliana] (GB:Q9LUT9); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G16740.1); similar to PpSFBB4-alpha [Pyrus pyrifolia] (GB:BAF47181.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 5915433    to: 5916662    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g17330.1    Description:  ECT6 (evolutionarily conserved C-terminal region 6). similar to ECT7 (evolutionarily conserved C-terminal region 7) [Arabidopsis thaliana] (TAIR:AT1G48110.2); similar to ECT7 (evolutionarily conserved C-terminal region 7) [Arabidopsis thaliana] (TAIR:AT1G48110.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75753.1); contains InterPro domain YT521-B-like protein (InterPro:IPR007275) Range:  from: 5916946    to: 5920194    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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