Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->ARR14(2)         --------->YAB1                          <---------ARR14(2)      <----------DOF2  --------->MYB46(3)       <---------GLK1(1) --------->KAN4(2)   <---------ARR14(2)         --------->GLK1(1)             <---------YAB1 ----->At4g35610     --------->ARR14(2)         <---------CCA1(2)  --------->LBD16 ------At4g35610    <------ZmHOX2a(1)       --------->ANAC46      <---------HSFC1(1) ----ARR10    <---------YAB1                --------->ANAC58      --------->HSFB2a(2)     ----------- --ARR14(2) <---------ICU4            <---------ANAC58            <---------HSFB2a(2)  --------->ANAC58 ->GLK1(2)  --------->ATHB12          <---------ANAC46         --------->GLK1(2)       --------->AtLEC2 --ARR11(3)--------->ICU4             <---------ANAC58       <---------HSFB2a(1)       --------->ANAC58 ->ARR14(2)<---------YAB1  <---------ALFIN1 --------->ANAC58 --------->HSFB2a(1)       --------->ANAC46   gctcattcctttcatgattagaggaacctccacttccatttcgtctacgcatatcagcctgcaagattccagaaaaacttatgaaaaacatgcaacacaa  5912800                                                                --------->ARR11(3)                                                            --------->ANAC46                                                          --------->ANAC46                                                          --------->ANAC58                                                          --------->ANAC58                                                  XXXXXXXXXXXXXXXXXXXX>MIR403                                                 <---------YAB1 <---------ARR11(3)                                                --------->AHL20(2)                                                <---------AHL20(2)   ---------->DOF2                             --------->YAB1  <---------GLK1(2) --------->AtLEC2 >RAV1(1)         ---------->DOF2              --------->AHL20(2)         ---------->DOF2  --------->CCA1(2)   aaaacaaaagataacattcccaaagtagccaaattccataccatttgaattaaaattcacacacaaaatctcacatgaaagccctgcagatagataccag  5912900                                                                                       --------->ANAC46                                                                                 <---------------AGL15                                                                                 --------------->AGL15                                                                                <-----------------AGL3                                                                                ----------------->AGL3                                                                                ----------------->AGL2                                                                                =====================                                        --------->AHL20(2)                      ----------------->AGL1                                      --------------->AGL15                     ----------------->AG                                      <---------------AGL15                     <-----------------AGL1                                      --------->TOE2(3)           <---------TOE2(3)  --------->MYB52(1)                                      <----------DOF2        --------->ATHB12   =====================                                      ===============================================================                                     =============================================================MADS_MADS                                     <-----------------AGL3--------->TOE2(3)<-----------GT1                                    ------->TEIL        <-----------GT1    <---------AHL20(2)            <---------ZAT18 ---------->DOF2     ---------->DOF2<---------WOX13(1)====================  --------->GLK1(2)     --------->ZAT6===========================================================MADS_MADS   agagattatgtcagtgtccccaaataacacaaaagatgaactttaaatggaaaagaattaacctcattgatgttgattttatcccataaacggcaaggga  5913000                                    ------>ZmHOX2a(1)                                    <---------HSFB2a(2)                                    --------->HSFB2a(2)    ------->GAMYB                                --------->ANAC46          <---------MYB55(2)           --------->LBD16                              --------->ZAT6              --------->MYB46(3)       <---------ARR14(2)                   --------------->AGL15                 ------>MYB46(1)           --------->ARR14(2)                   <---------------AGL15                 -------->P           --------->ANAC58                  =====================================================================MADS_MADS                  ----------------->AGL3                 ------>MYB83  <---------------AGL15                  ----------------->AGL2   --------->MYB52(1)          --------------->AGL15            ---------->DOF2  --------->ZAT14           --------->AtMYB61      --------->ANAC58           <---------ATHB12  <---------ZAT18          <---------MYB52(2)     --------->DAG2 ======================================================================================MADS_MADS ======================================================================================MADS_MADS ==================================MADS_MADS          --------->MYB46(3)    ---------->DOF2 ==================================MADS_MADS   --------->CCA1(2) ----------->HVH21<---------GLK1(1)   gaagatggaatcaataaagccccaaaaatagaacactcctcgaactaagagatgaaaccaaccacgagtgacacttaaaaaagcaattccgaaaaatcac  5913100                                                                          --------->MYB46(3)                                                             <---------SPL7                                                            <---------MYB46(3)                    <--                                                           <---------AtMYB61                      ===                                                       <---------ZAT14   --------->ANAC58      ======                                                  <---------ANAC58 <-----------HVH21         --------                                                  <---------ANAC58--------->ANAC46         <XXXXXXXXX                  ---------->DOF2             <---------ANAC58   <------NtERF2             --------->LBD16               ----------->RAV1(1)            <---------AtLEC2   --------->LBD16         <---------LBD16              <----------ID1                  <---------ANAC58 <---------DEAR3(1)       --------->ALFIN1              <---------ETT(1)               <-------TEIL<---------ANAC46--------->ANAC46<---------ZAT14      --------->LBD16                        --------->ABI4(2)--------->PCF5        --------->ZAT18     --------->HSFB2a(2)                 <---------DEAR3(1)--------->ALFIN1   <---------ATHB12 <-----     <---------HSFB2a(2)            <------ZmHOX2a(1)  --------->ZAT14   --------->ANAC58--------->ZAT14   acaaattccagagattgcgacaaagagagcgagagagaggaagacggtgcatgcctgtgcagtggtccgcgtctcacccaatcgagcccagtgcggagga  5913200                                                  --------->ZAT18                                                  --------->ZAT14                                                  <---------REM1(2)                                                *TSS                                             <---------ZAT18                                             --------->ZAT18                                             --------->WRKY38(1)                                             --------->WRKY45                                          <---------ANAC46                                          <---------O2                                         <------NtERF2                                         ------>NtERF2                                        <---------ANAC46                                        --------->DEAR3(1)                                       --------->ATERF1(1)                                       --------->DEAR4(2)                                       <------NtERF2                                      <---------ATERF1(1)                                      ------>NtERF2        ---------->DOF2              <---------DEAR3(1)   --------->At4g35610               --------->ANAC46   ----------->GT1                  --------->ZAT18  --------->GLK1(2)                <---------ANAC58                          <------------CBF ----ZmHOX2a(1)                    <---------ANAC46                        <---------AHL20(2) ===============================HOX2a_HOX2a<-------MYC3                    --------->AHL20(2)       < ===============================HOX2a_HOX2a------->MYC3                    --------->AHL20(1)      -- ->ALFIN1--------->DAG2            <---------ANAC58<---------ALFIN1        <---------YAB1   <-------- XXXXXXXXXXXMIR413            <-----------RAV1(1) <---------ZAT14  <---------LBD16     <----------DOF2 -ZmHOX2a(1)             ------>ZmHOX2a(2)--------->O2    ------>NtERF2   --------->AHL20(2)---------   ggagaagctaaaaagttatgaagttgatcgcaatgttgcgcgccgcgtggactacactgccgagactaattcggaattttattgattccctttgagcagt  5913300                                      <------ZmHOX2a(2)                             <---------HSFB2a(1)                           --------->MYB52(1)                         <---------MYB52(2)    <---------ARR14(2) --------->MYB52(1) <--------P       <------ZmHOX2a(1)  --------->ARR11(3)                                       ------- ---------MYB52(1)===========================HOX2a_HOX2a               --------->YAB1         <------ ------->LBD16   ----------->GT1     <---------ARR11(3)         <----------DOF2        <---------AGP1 -At4g35610 <---------ANAC58 --------->HSFC1(2)               ------>MYB83        <---------REM1(1) >At4g35610 <---------ANAC58 --------->HSFB2a(1)              ------>MYB46(1)  <-----------RAV1(1)   ccggtagatcgagcgcgtgaggaaaaaacgaacggtccagatcatagagtttggaacttcgaccaactttctattacaactatgttgtagttctgtttta  5913400                                  --------->At4g35610                                  <---------At4g35610                                <-----------RAV1(2)                           <---------YAB1                                                   ---------                          <---------TOE2(3)                                                 ---------                        <---------AHL20(2)                                                ---------->DOF2 -->AHL20(2)        <---------AHL20(2) <---------------AGL15                            --------->ANAC58 ---AHL20(2)       --------->AHL20(2)----------->GT1                                    --------->ANAC58   atatttcaagtttttagaattttaaatttatgtttcagatgctaaaatttgtatacactaaaaacatcatttaccaaaacttgatgaaaaacgaaagaaa  5913500                                              <---------YAB1                                           <---------YAB1<---------ANAC58        <---------YAB1                                          <---------ARR11(3)                 <---------GLK1(2)                            --------->AHL20(2)--------->ICU4                 --------->ARR11(3)                         ----------->GT1  --------->ARR11(3)               --------->ICU4                <----------DOF2          --------->YAB1  <---------ANAC58---------->DOF2 >ANAC58     --------->ANAC58--------->AHL20(2)<---------AHL20(2)   --------->HSFB2a(2) >ANAC58     --------->ANAC58<---------AHL20(2)--------->AHL20(2)   <---------HSFB2a(2)   ctactctcaattcccaagctttgagaaagattaaattttgcaaagataattaatagatttcgagctatttctcgacaaagattatgtttttttggcccag  5913600                                                                                                  ---                                                                                                -----                                     ----------->HVH21                        --------------->AtSPL8                                   <---------ANAC55(2)                        <---------------AtSPL3                                   --------->ANAC55(2)                   ------->TEIL        ------->TEIL            <-----------GT1  <---------TOE2(2)   ------->TEIL          <<<<<<<<<EIN3  <---------YAB1         ----------->GT1   --------->DEAR3(1)    <-------TEIL    ------>NtERF2<---------------AtSPL8   ttttgtttagtttgtaacaaattggagcaccgaggttatgtgacccaaatgtacgtagactagtcgaggccaatgtatatatagtactactattgtacct  5913700  Previous    Next  AGI:  At3g17310.1    Description:  methyltransferase family protein. similar to DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT5G14620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70897.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525) Range:  from: 5909007    to: 5913248    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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