Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->ARR14(3)                                           --------->ARR11(3)              <-----------HVH21                             --------->ANAC46    ---------->ID1            <-----------TGA1                         <---------YAB1    <---------ARR14(3)             <---------bZIP60(1)    <<<<<<<<<<<<<<<<<LFY<-----------HVH21  <---------ARR11(3)      --------->ATHB12 --------GLK1(1)      <---------WOX13(1)   <---------GLK1(2)      <---------YAB1<---------ALFIN1 ->YAB1            <---------YAB1 --------->REM1(1)       ---------->DOF2---------->ID1------>ZmHOX2a(1) -YAB1          <-----------GT1   <---------ALFIN1   --------------->AGL15--------->bZIP60(1)   gatttcagacactggttttttctgattgtcatcgcaacacctcaagattttgtagctatgtaaagaagatgatttgtcgtcaccacatcctagagcatat  5904200                                                   <-----------RAV1(2)                                                  <---------ZAT14                                                  <-------TEIL                                    ---                                           <---------WRKY18(1)                          <---------ANAC58                                ------>ZmHOX2a(2) --------->ZAT14                       <---------ANAC58          --------->YAB1    <---------YAB1--------->WRKY38(1)             <---------ZAT14      <-----   <---------YAB1     >>>>>>>ZML2         ----------->HVH21             <---------ZAT14 <---------ANAC46 --------->YAB1       <---------HSFB2a(2) --------->WRKY12      --------->TOE1(2)  <-----------RAV1(1)   atatcatcactatcgtaacgagttctaggtatgatccatgtgatttgaccggtacaggggttccaaactacgagtctacagttcattgtggcgcataaga  5904300                                             <---------ANAC46                                         --------->HSFB2a(1)                                         --------->HSFC1(2)     ----------->GT1                 <---------ARR14(2)      <---------HSFC1(2)  ------->TEIL              <---------WOX13(1)  --------->ARR14(2)       --------->ZAT18                    -------       --------->ZAT14            --------->GLK1(2)        <---------ZAT14                 <---------       <---------ZAT14            <-----------ARR10<---------AtMYB61                      <---------DAG2   --------->ATHB12               <---------ARR14(2)       <---------ZAT18    --------->ARR14(2) ------>MYB46(3) --------->ARR14(2)     ------->TEIL     --------------->AtSPL8   <---------MYB59 --- -----ID1  ----------->HVH21  ----------------->AGL1    <---------ANAC46      <---------ARR14(2)  <--   acaaaccattgcagtgatggattcgaaatatttccaaatctgaaccttcgggtatggtgagtgtacctgtaaaatccatggataccgaatagccttttgg  5904400                                                                                                  ---              --------->ANAC46                                                                   <---              --------->ANAC58                                                                  <----         <-----------ARR10                                                                      <----         <---------ARR14(2)                                                                     <----         --------->ARR14(2)                                                                     -----         --------->ARR11(3)              --------->At4g35610             ------>MYB46(1)        -----         <---------ARR11(3)              <---------At4g35610             ------>MYB83          <-----        --------->GLK1(1)             <-------TEIL                     <---------MYB59         <----- -->HSFB2a(2) --------->ANAC58     --------->ATHB12                    --------->MYB46(3)   <-------- -DOF2  <---------GLK1(1)         <---------YAB1                  <----------DOF2 --------->HSFB2a(2) ------>GLK1(1)                   --------->ICU4   --------->DEAR3(1) --------->ANAC46   ------->TEIL -------GLK1(1)            <-----------GT1      <---------ALFIN1  <---------DAG2  <---------HSFB2a(2)   aattccatggatatctacgctaatcgaattaacctcatgattcatcagaaacaccgtctcccttgctgctttacccaacttcttctcgacgaatttcgga  5904500           --------->ZAT18           <---------SPL7          <---------ANAC58          <---------ANAC58         --------------->AtSPL8      ---------->DOF2 --->ZmHOX2a(2)                                                                <---------MYB52(1) ---ZmHOX2a(2)                                                                ----------->GT1 -----ARR11(1)                                                                --------->LBD16 -----ARR14(2) <---------------AGL15                                        <---------LBD16 -----ARR11(3) --------------->AGL15                                     <---------GLK1(1)          - ---->ARR14(2)----------------->AGL3                                    --------->ARR14(2)         <- ---->ARR11(3)----------------->AGL2                                    <-----------ARR10         <-- ----CCA1(2)  <-----------------AGL1                                    --------->ARR11(3)        <-- ----ARR14(1)--------->SPL7                                             <---------ARR14(2)        --- -LBD16  --------------->AtSPL3   <-----------------AGL1--------->ETT(1)<---------ARR11(3)        ---   tctttgaacaaagcgtaccattttttgcaagtggttttcagtttcggtatagacttggtcggaagtctagagagtatctccggtaacaaatcgtatggaa  5904600                                                         --------->ANAC46                                                         <----------ID1           <-----------TGA1                              --------->ANAC58    <---------GLK1(1)                                    --------->ANAC58    --------->GLK1(1)                                   --------->RAP2.6(3) ----->ZmHOX2a(2)                                    --------->CCA1(2)              <---------YAB1 -----ZmHOX2a(2)                                <------ZmHOX2a(1)             --------->ARR14(2) -------ARR14(2)                  ------>ZmHOX2a(2) <---------------AtSPL3    <---------ARR14(2) -------ARR11(3)                  =====================HOX2a_HOX2a            <---------ARR11(3) ------>ARR11(3)          <---------GLK1(1)--------->HSFB2a(2)                --------->ARR11(3)<---- ------>ARR14(2)          --------->GLK1(1)<---------HSFB2a(2)              ----------->ARR10 <------   gatcggaaatcgtcgtcattttctcgtgatttctgatctcagtctctagaggaagaaatacggcaaatggagattaagaagatactattactgtttctta  5904700                                                           --------->YAB1                                                          <------ZmHOX2a(2)                                                         --------->ARR11(3)                                                    <-----------HVH21                     <---------ATHB12                                                   ==============HOX2a_HOX2a             ------>MYB46(1)                                                   ------>ZmHOX2a(1)                     <---------ARR14(2)                                                 ----------->RAV1(2)     <---------ARR11(3)   -------                                       <---------ANAC46 --------->At4g35610     <---------TOE2(3)            <----------DOF2         =========================RAV       <---------YAB1    ------>MYB83   <----------DOF2   ----------->RAV1(1) <---------ANAC46<---------ARR11(3)     <---------TOE1(3)   - --------CBF<---------DAG2          <-----------RAV1(1) <---------At4g35610   ---------->DOF2------>ZmHOX2a(1) ---YAB1 <-----------GT1      <-------TEIL     <-----------GT1       --------->YAB1   ------------>CBF   ttgggcttttgttacttttagcccaacatagtttcattatgtggtgttttctcctgtcagatcataagttaacatgattttaaaggttaccaatcctgca  5904800                       --------->WOX13(1)                 --------->WRKY18(1)                 ------------>CBF             <---------ANAC58         <---------ANAC58                          ----------->GT1         <---------ANAC58                       <------ZmHOX2a(1)                           ---------       --------->ARR11(3)                     <---------TOE1(2)                             ---------       <---------ARR11(3) --------->YAB1      <---------TOE2(2)                            <-------TEIL ----->CBF   <---------ANAC58               --------->TOE1(2)    --------->DAG2 <------ZmHOX2a(1) -------->WOX13(1) --------->WOX13(1)       --------->TOE2(2)   ---------->DOF2 ----------->GT1   atccatcaagttcttgctggtcaatctatcaaaatagtctttgaaacgtaggatagagaaattagataaagcatacagtagaggattaaaacatacacta  5904900                     --------->ANAC58                     --------->ANAC58                     --------->ANAC46            <------ZmHOX2a(2)                   <---------MYB52(1)           <---------ARR11(3)       <---------TOE1(2)       ---------->DOF2 --------->ANAC46 <-------TEIL<----------DOF2 ------------>CBF<------ZmHOX2a(1)  <---------TOE2(2)                                      <--------- >ZAT6--------->AHL20(2)           <-----------RAV1(2)   ----------->HVH21              --------->ARR11(3) >ANAC46   --------->ARR11(3)  ------->TEIL  --------->MYB46(3)    --------->YAB1       <---------ARR11(3)   cttctcaataaaagatcaaggacacacaacatgaaactcaggttcgaaccattactttggtgaccagaaacatagtttggaaggaactgagaacttttga  5905000                                                                                 --------->ANAC46                                                                               <---------ALFIN1                                           --------->ARR14(2)                 <---------ZAT14                            <---------AHL20(2)         --------->YAB1         --------->ZAT14                           --------->AHL20(2)  <-----------GT1       --------->At4g35610 <---------ANAC58                --------->ANAC58      --------->SPL7<---------CCA1(2)<---------ZAT2      <---------ANAC58                --------->ANAC58  --------------->AtSPL8             --------->ZAT2 <---------ICU4 -DOF2        ---------->DOF2     --------------->AtSPL3             <---------At4g35610 <---------ANAC46   gttactgagttttcacaaaagccatagcatttaatattcgtaccatattttcccatatcaaaatcgtggccagctctcgctgcacatcatggcgttcaca  5905100  Previous    Next  AGI:  At3g17280.1    Description:  F-box family protein. Identical to Putative F-box/Kelch-repeat protein At3g17280 [Arabidopsis Thaliana] (GB:Q9LUU3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G17540.1); similar to MdSFBB3-alpha [Malus x domestica] (GB:BAF47179.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 5903459    to: 5904619    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g17290.1    Description:  transposable element gene. hAT-like transposase family (hobo/Ac/Tam3), has a 3.1e-27 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays) Range:  from: 5905058    to: 5906722    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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