Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->TGA1a                                                <---------YAB1                        <---------O2                                                  <---------ARR11(3)                        <---------TGA1a                                             ---------->TaMYB80                        ======================================bZIP_DOF            <------ZmHOX2a(1)   ===============================MYC_MYB                                      <---------HSFB2a(2)   ------->GAMYB        --------->O2                  <---------HSFB2a(2)      <---------HSFC1(1)  <------------MYB.PH3(1)                          <----------DOF2             --------->HSFC1(1)  ================================MYC_MYB<---------YAB1        <-----------GT1 --------->HSFB2a(2) -------->MYB52(1) <---------At4g35610--------->ICU4  --------->HSFB2a(2)   <----------DOF2   gataaccgtcttgacattttccgctcatgtgtcgatgagcatgatgaattgggcttctagtaatataactgaattgggcttctaggaatatcactgaatt  5872900                  --------->HSFB2a(1)                  --------->HSFC1(2)                  <---------HSFC1(2)----------->GT1                  <---------HSFB2a(1)    --------->ICU4              --------->ANAC58     <---------TOE1(3)              --------->ANAC58     <---------TOE2(3) --------->DAG2            ---------->DOF2        --------->DAG2--------->YAB1           <------NtERF2           --------->MYB59  ---------->DOF2       ----------->GT1           <       <----------ID1          <------MYB83 <---------YAB1    <---------ALFIN1                     <-    ---------->DOF2            <------MYB46(1) ------->TEIL<------ZmHOX2a(1)                     <---   tgggctaaaaggccgaaagaaacttcttgtagttggtaaggtaactatgaatcaaaaagtaggaccacattttgtatgggaaatttgcaattcaattcta  5873000                                            --------->ARR11(3)                          <---------bZIP60(1)                                   --------------->AtSPL8                 --------->YAB1--------->bZIP60(1)             --------->YAB1  <-----------GT1<---------ARR11(3)            --------->TOE1(3) ---------YAB1 <-----------GT1     --------------->AtSPL3                 --------->TOE2(3) --------AHL20(2)          --------->AHL20(2)                ---------->DOF2            ----------->GT1 ------YAB1 <---------YAB1 <---------AHL20(2)   ----------->GT1--------->ICU4  --------->ZAT6   ttattttggtgtctattatacaactcgaattaaacaattcgtacatgatattgaaaatcaccataaagatgagaaaccataacaccagtgatgttacaaa  5873100                 --------->MYB46(3)                 <---------MYB55(2)                 <---------ATHB12                ------>MYB83                --------->ANAC58                ------>MYB46(1)                --------->ANAC58                -------->P              ------->GAMYB              --------->AtMYB61              --------->MYB46(3)              <---------MYB111(1)             --------->DEAR3(2)             <---------ATHB12             --------->MYB46(3)             <---------MYB52(2)             <---------MYB55(2)            -------->P            ------>MYB46(1)            --------->ANAC58            --------->ANAC58            ------>MYB83                        --------->ANAC58          --------->MYB46(3)                    --------->ANAC58          <---------MYB111(1)                   --------->ANAC46          --------->AtMYB61                   --------->ZAT6          ------->GAMYB                 --------->LBD16         <---------MYB52(2)            <---------ANAC46         <---------MYB55(2)           <---------LBD16                     ------>ZmHOX2a(1)         --------->MYB46(3)         <-----------GT1           -------->ATHB1        --------->ANAC58           <-----------GT1            --------->ATHB51                      <        -------->P              <---------AHL20(2)            <---------ICU4                     <---        --------->ANAC58       <---------AHL20(2)            --------->ICU4                   <------       --------->WOX13(1)      --------->AHL20(2)            <---------ATHB12                 ------- <---------AHL20(2)            <---------AHL20(1)        <---------MYB59 --------->TOE2(3)    ------- --------->AHL20(2)      --------->ANAC46  ----------->HVH21 <---------ATHB51 ---------->DOF2 <------   aaataaaatcaaccaaccaaccaatagacacaatttttttcccgtgtaacacgagacgacccaattattcgtcttcctcaaaaagactcgaaaacgacgt  5873200                                                                             <---------AtMYB61                                                                           <----------DOF2                                                            --------->ARR11(3)                          <---------ANAC58          --------->HSFB2a(2)   <---------ANAC58                          <---------ANAC58          <---------HSFB2a(2)   <---------ANAC58   <-------                     <---------HSFC1(2)        --------->At4g35610     <---------WOX13(1)    <------- ------------CBF     --------->HSFC1(2)        <---------At4g35610    <------------CBF  <---------ANAC58 ------ANAC46        --------->HSFB2a(1)       <------NtERF2<---------ARR11(3)          <---------ANAC58 ---O2     <---------ALFIN1                   <---------DEAR3(2)  --------->YAB1  --------->MYB52(2) -->O2  <-----------GT1<-----------GT1       <---------DEAR3(1)<----------DOF2<---------MYB46(3) -->bZIP60(1)        <---------HSFB2a(1)     <---------RAP2.6(2)  --------->TOE2(3)<---------ANAC58 ---bZIP60(1)    --------->ANAC46  <---------MYB46(3)--------->LBD16 <---------ICU4<---------ANAC58 *TSS   cgtattgaattcaccactcacgaagtttccgtcttcgttgttgagagtcggcttccgaaaactatctttcttaattgctttggttccttgccttgccttg  5873300                                                                            <-----------GT1                                                                     --------->YAB1                                                                 <---------MYB52(1)                                                              <-------TEIL<-----------GT1--------->GLK1(2) ------>ZmHOX2a(1)                      <----------DOF2     <---------ARR14(2)  <----------DOF2 --ANAC58     <---------ANAC58      ---------->ID1          --------->ARR14(2)  --------------------- --ANAC58     <---------ANAC58    <-----------GT1 <---------CCA1(2) <---------YAB1      <---------GLK1(2)   ctcctcagaaatttttgcttctgtttgattttgtttttgcccctttgcacacatatcatccaaattcgttatcatttttcacctttgaaagaatctatct  5873400                                                                                          -----------                                                                                          <---------ANAC46                                   <------ZmHOX2a(2)                                   --------->LBD16                             --------->ANAC46                                         <---------HSFB2a(2)                             --------->ANAC58                                         <---------LBD16                             --------->ANAC58                                         --------->HSFB2a(2)                            --------->SPL7                                           <---------ANAC46                    <---------HSFB2a(2)                                              <---------LBD16                    >>>>>>>ZML2   <-----------HVH21             -------->HAHB4      <---------LBD16                    --------->HSFB2a(2)                         --------->YAB1<---------TOE2(3)                 --------->AGP1 --------->DEAR3(1) <----------DOF2            <---------TOE1(2) >WRI1 <---------MYB52(1) <---------SPL7      <---------ZAT2 --------->YAB1   <---------TOE2(2)  <---   ccttgctctgttatctccagttctagggcatacgccgatcacatccctagctccttttggctctaataatacagtaatcttaggttttcggggagtgaat  5873500                                                  ------>ZmHOX2a(1)                                                 --------->TOE1(2)                                                <---------HSFB2a(1)                                                <---------HSFC1(2)                                                --------->HSFB2a(1)                                                --------->HSFC1(2)                 <------NtERF2                                               <------ZmHOX2a(2)                  --------->LBD16                                              --------->ARR14(2)                  <------NtERF2                                              <---------ARR14(2)                 <---------DEAR3(1)                                             --------->GLK1(1)                  <---------ANAC46                                          --------->LBD16                       <---------LBD16                    <---------At4g35610   ------>NtERF2  --------->ANAC58      <------NtERF2 >GT1               --------->At4g35610  <---------DEAR3(1)                  --------->ALFIN1 ------ANAC46  <---------ZAT6           <---------LBD16  --------->ANAC58 <---------TOE2(3)        --   cgtgtattggtattctagttttagctcaagaacatgtttttctccggcgatccttcgactcggaagcgagttgatttaggtggccggagcaccaaggaga  5873600                                                                          --------->At4g35610                                                                          <---------At4g35610                                                                       --------->ZAT2                     --------->ZAT18           <---------MYB52(1)      <---------At4g35610               <---------HSFB2a(2)            <-------GAMYB            <---------ZAT2               --------->HSFB2a(2)           <---------DEAR3(2)        --------->At4g35610          --------->HSFC1(2)                 <---------MYB46(3)       <-----------RAV1(1)          <---------HSFC1(2)                <---------TOE1(2)<---------At4g35610          --------->HSFB2a(1)               <---------TOE2(2)--------->At4g35610          <---------HSFB2a(1)               <---------DEAR3(1)    --------->GLK1(1)          <---------At4g35610    <---------ANAC46           ----------->RAV1(1)    <---------LBD16--------->At4g35610    ------------>AtMYB77    <---------GLK1(1)    <---------TOE2(3) ------->CCA1(2)   <---------At4g35610<---------ARR14(2)  --------->At4g35610          <---------TOE1(3)   gagatgctcggaagcttctcgagcagactagaatggagcgtaatcgtcggttactacagaagcagcagaactctgctgctctcaaaattcaggtttgcga  5873700                                                                                              <------                                                                                           <---------ARR11(3)                                                                                    --------->CCA1(2)                                                                                   --------->ARR11(3)                                                                                   <---------ARR11(3)                                                                                   <---------ARR14(2)            <----------DOF2                                                        --------->ARR14(2)       <----------DOF2        --------->AHL20(2)                                 --------->ANAC58      <---------DAG2          <---------AHL20(2)                                 --------->ANAC58   < ---------->DOF2      <---------LBD16                                          <---------AtLEC2     -   ttgaaaagccttttcttttgggactctgggattttatttgtgttttctgagcaatgtagaacgaacacagtgagtcattttgcaagatatgtagaacttt  5873800  Previous    Next  AGI:  At3g17203.1    Description:  pseudogene, gibberellin 2 beta-hydroxylase, blastp match of 50% identity and 1.1e-66 P-value to GP|5579092|gb|AAD45424.1||AF100954 gibberellin 2-oxidase-like protein {Pisum sativum} Range:  from: 5870793    to: 5872860    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g17205.1    Description:  UPL6 (UBIQUITIN PROTEIN LIGASE 6); ubiquitin-protein ligase. Identical to E3 ubiquitin-protein ligase UPL6 (UPL6) [Arabidopsis Thaliana] (GB:Q8RWB8;GB:Q9LUV3); similar to UPL7 (ubiquitin-protein ligase 7), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G53090.1); similar to UPL7 (ubiquitin-protein ligase 7), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G53090.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44956.1); similar to hypothetical protein OsI_017867 [Oryza sativa (indica cultivar-group)] (GB:EAY96634.1); similar to hypothetical protein OsJ_016442 [Oryza sativa (japonica cultivar-group)] (GB:EAZ32 Range:  from: 5873300    to: 5881531    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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