Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->HSFB2a(2)                                                                                    <---------HSFB2a(2)                                    <---------AHL20(2)                             <---------LBD16                                    --------->AHL20(2)                      --------->At4g35610                                --------->MYB46(3)                          <---------At4g35610 -----AHL20(2)                 ------>MYB83<----------DOF2               --------->At4g35610  <------ZmHOX2a(2) -----YAB1       --------->YAB1------>MYB46(1)                        --------->At4g35610    -------- --->TOE2(3)    <---------YAB1----------->RAV1(1)             <----------DOF2     <---------LBD16 --->YAB1  <---------ICU4   --------->MYB46(3)     ---------->DOF2    <---------At4g35610    <-------   taatggactaaaatcattttgataactaaaaccaacaaataaatactttgccataaatcactcactttcttcagcatcagcaaactcgggaagaagatca  5854500                                                 --------->ANAC58                                                 --------->ANAC58                                                 --------->ANAC46                                                <-------TEIL                                                --------->ZAT18               --------->YAB1                                                <---------ZAT14            ----------->RAV1(1)                                                --------->ZAT14    <--------ATHB1                       <---------ARR14(2)       <---------ZAT18    <------------ATHB5                       --------->ARR14(2)--------->ANAC58          --------->ATHB12        --------->WOX13(1)  --------->ANAC46<---------------AtSPL8 --------->YAB1 ->ARR11(3)       --------->HSFB2a(2)    --------->ANAC58         <---------ATHB12 --ARR11(3)       <---------HSFB2a(2)    --------->ANAC46         --------->ICU4 ---------->DOF2   --   ccttcttcatcaatcttcttctgcaaatccaatccacaaaaacaagcaagtacacaacttcaacaccaatgatggaacaacaataaagaactaaaaattc  5854600                                                                             <---------WOX13(1)                                                              --------->At4g35610                  <<                                                              <---------At4g35610            <-------                                                <---------ANAC46            >>>>>>>>>ARR1    <-------                                       <------ZmHOX2a(1) --------->AGP1     >>>>>>>>>ARR2   <--------                                 <------ZmHOX2a(1)   <---------MYB52(1)    --------->ATHB12 <--------                --------->HSFB2a(2)   <----------ID1<-----------HVH21     <---------YAB1<---------ANAC58             <----------DOF2    --------->LBD16 <---------ANAC58          --------->ICU4<---------ANAC58        ------->TEIL          <---------LBD16   <---------ANAC58   ---------->DOF2      <XXXXXXXXXXXX ------->ANAC46 <---------HSFB2a(2)---------->DOF2  <-----------TGA1--------->DAG2   <----------DOF2   gacgaaatcgaacctctttgagaagaatggattcaggaaaaggaccagtggcttcgtcaggtctagctgaaaagttatgattgtcatctttcttgctttt  5854700                     --------->ANAC58                     --------->ANAC58                    ------>MYB46(1)                    ------>MYB83                   --------->MYB52(1)                 <---------MYB52(2)                 --------->MYB46(3)                ------>NtERF2              ----------->HVH21             <------NtERF2             --------->LBD16                                               <---------ANAC55(1)             ------>NtERF2                                                 <---------ANAC58            --------->DEAR3(1)                                             <---------ANAC46           --------->RAP2.3(1)                                          ----------->HVH21           <------NtERF2                                                ----------->TGA1           --------->ATERF1(1)                                         <-----------HVH21          <---------RAP2.3(1)                                         --------->ANAC46          ------>NtERF2                                               --------->ANAC55(2)          <---------ATERF1(1)                   <------NtERF2         --------->TGA1a          --------->ABI4(1)                  ------>NtERF2            <---------O2         --------->DEAR3(1)                 ------>NtERF2             <---------TGA1a         <---------DEAR3(1)                <---------RAP2.6(2)        <---------ANAC58         --------->RAP2.3(3)              <---------At4g35610         ==================MYC_MYB         --------->ATERF1(2)              --------->At4g35610         --------->O2         <---------ATERF1(2)             <-----------RAV1(1)          <---------ANAC58         --------->RAP2.3(2)           ------>ZmHOX2a(1)            --------->ANAC46         --------->ANAC46              ----------->RAV1(2)          --------->ANAC58        --------->RAP2.3(1)          ------>ZmHOX2a(2)              <---------O2        --------->ERF1               ==========================HOX2a_HOX2a <---------bZIP60(2)       <---------RAP2.3(1)          <------ZmHOX2a(2)               --------->ANAC58      --------->ANAC46------->GAMYB ===========================HOX2a_HOX2a <---------ANAC58  <<<<<<<<<TBF1------>NtERF2       --------->ARR11(3)               <---------TGA1a       --------->GLK1(2) <<<<<<<TBF1--------->RAP2.6(2)    --------->ARR14(2)               ====================MYC_MYB ---DOF2--------->ORA47(2)         <---------GLK1(2)                --------->O2<---------MYB46(3) --DAG2<---------ATERF1(1)         --------->AGP1                   --------->TGA1a       ------->TEIL -ANAC58--------->DEAR4(2)         <---------ARR11(3)             <---------ALFIN1       <---------GLK1(2) -ANAC58--------->ATERF1(1)      ----------->ARR10           <---------TOE2(3) <--------P<---------ARR14(1) XXXXXXXXMIR835-3P--------->AtMYB61<---------ARR14(2)   <------ZmHOX2a(1)--------->MYB52(1)   cttcttcttcgccgccgcgaccaacggaagaggtttagatcctctgcggccgagactaggattaaggcacacgcgtgacgggttgatgaacgaatctcta  5854800                                            <------ZmHOX2a(1)                                         <-----------RAV1(2)                                        <---------ZAT14                                       --------->ALFIN1                                      ------->MYC2                                      <-------MYC3                                 <XXXXXXXXXXXXXXXXX                                      ------->MYC3                             ----------->GT1                                      <-------MYC2                        <---------ANAC46                                     <---------ANAC46                   <---------ZAT14                                     <---------ANAC58                   --------->ZAT14    --------->GLK1(2)                <---------ANAC58        ---------->DOF2 --------->ZAT14   <---------GLK1(2)              <-----------------------TaNAC69(2)    --------->ZAT18   ccgtcgattctgggtctcagagacaccagagacgaagacgcgtgcaggagtgactccattggagaaagcacgagtgaagtgaagtaagaagaaggggaga  5854900                                                             <---------YAB1                                                            --------->ARR11(3)                                                            <---------ARR11(3)                     <---------ARR11(3)                    --------->RVE1(1)             XXXXXXXXXXXX                     --------->ARR11(3)                    --------->CCA1(1)             XXXXXXXXXXXX            *TSS ---------->DOF2                       --------->AHL20(2)           --------->AHL20(2)            ---------->DOF2                            <---------AHL20(2)           <---------AHL20(2)       <---------At4g35610                            --------->YAB1              <-----------TBP       --------->At4g35610                           <---------YAB1        <------------CBF XXXMIR847--------->At4g35610                   <----------DOF2  <---------ICU4<---------YAB1    ----   gagggttttagcagaagagcaaagacatttttgggttttggataagaaaacttttattaaaatatcattttgacccctattgttatttatatgttcccaa  5855000       <-------TEIL       <---------ZAT14                                                         --------->MYB46(3)       --------->ZAT14                                                        -------->P    --------->LBD16                                                       --------->ANAC46   --------->ANAC46                                                       --------->ANAC58   --------->LBD16                                                        --------->ANAC58  <---------LBD16                 <---------MYB52(1)              <---------AHL20(2)        --------- XXXXXXXX>MIR398B/C               <----------DOF2                 <---------AHL20(1)     <----------- XXXXXXXX>MIR398A         ---------->DOF2                         --------->AHL20(1)     --------->TOE2(3) ----->ARR14(2)      <------ZmHOX2a(2)                            --------->ARR11(3)     ------------   atcgcccggtacagtttcaatagatcaaaaaagaccctttgttttgtattcatatagagtcaaactaaaatattgtaagcaacctctgtttccataaaga  5855100                                                                      <---------GLK1(1)                                                                      --------->GLK1(1)                                                                     <---------ARR14(2)                                                            <------MYB46(1)                                                            <------MYB83                                                           --------->MYB111(1)                                                           <---------MYB46(3)                                                           --------->MYB111(2)                                       --------->ANAC58   <--------P --------->ARR14(2)                            ------>MYB83                  <---------MYB55(1)                            ------>MYB46(1)              <---------ANAC58  <-----------GT1         <---------MYB59                <---------ANAC58                       <----  --------->YAB1   --------->CCA1(2)   --------->ANAC58 <---------MYB46(3)            --------->ATHB12 ->DOF2  <----------DOF2 --------->DEAR3(2)  --------->YAB1--------->MYB46(2)        --------->ICU4 ----AGL15        <---------ARR11(3)   --------->ANAC46 --------->ATHB12            <<<<<<<<<<<<<<<<<LFY --->AGL15        --------->ARR14(2) <---------ALFIN1 <---------WOX13(1)        ----------->GT1<-----   ctaatcacattcttttacaagatttgaaccgaacttggaacaccccatcaaaactaattggttggtatgcagatttctcaagaagtaaacattggtttta  5855200                                                                                           --------->ZAT14                                                                                           <---------ZAT14                                                                                     <-----------GT1                                                 --------->MYB46(3)               --------->YAB1  <----------DOF2                            ------>ZmHOX2a(1)                    <---------ICU4  --- -----At5g28300  <-----------HVH21 <----------DOF2        ------->TEIL           <---------YAB1   === ------GT1   ------->TEIL          --------------------->WRI1                ----------->GT1<--------   ccatcttttctcatgtatgtgtcacaacacattgccactttgttctcctcatccaccatgaaactcatcgaaaatgaaaacgtataattacatttcactg  5855300                  --------->bZIP60(1)                  <---------bZIP60(1)                  --------->TGA1a                  <---------TGA1a                  <---------bZIP60(2)                 --------->SPL7               ----------->HVH21             --------->O2             <---------O2            <---------LBD16           <---------ALFIN1     =======================bZIP_DOF                                    <---------ANAC58     <----------DOF2                                                    <---------ANAC58    <---------HSFB2a(1)                                    <---------ARR14(2)    <---------HSFC1(2)    <---------YAB1                   <---------ARR11(1)    --------->HSFB2a(1)  <-----------TGA1                  --------->ARR14(2)    --------->HSFC1(2)   <-----------HVH21                 <-----------ARR10  --------->ARR11(3)   <------NtERF2                       --------->ARR11(3)  <---------ARR11(3) <---------DEAR3(1)            XXXXXXXXXXXXXXXXXXXX>MIR774 ------->DOF2--------->ANAC46           --------->WOX13(1) <---------ARR11(3) <---------ICU4 ===========================bZIP_DOF--------->REM1(1)<-----------GT1 <---------MYB52(1) ---GT1   <---------REM1(2)--------->ATHB12--------->YAB1 <---------CCA1(2)--------->REM1(1)   taaagaactttctccacgggacgtcgtcgtcattggcttcatcaatcttactagttaaccatatctccatcgttgcttcatcttcactctgaaataacac  5855400  Previous    Next  AGI:  At3g17170.1    Description:  RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3); structural constituent of ribosome. similar to unnamed protein product [Vitis vinifera] (GB:CAO44948.1); contains InterPro domain Ribosomal protein S6; (InterPro:IPR000529); contains InterPro domain Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717) Range:  from: 5853065    to: 5854912    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version