Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->ZAT2                     <---------ZAT2                   <---------ALFIN1                  --------->LBD16           <-----------ARR10                                         ------->TEIL          ------>MYB46(1)              --------->ANAC46             <---------CCA1(2)          ------>MYB83               --------->ANAC46               <---------GLK1(2)        <---------MYB59       --------->YAB1                 --------->GLK1(1)       --------->ANAC58 <---------At4g35610 <---------At4g35610                    --------->ARR14(2)       --------->ANAC58 --------->At4g35610 --------->At4g35610                    <---------ARR14(2)   <----------DOF2    - >ZAT6  --------->TOE2(3)    <------ZmHOX2a(2)    --------->ZAT6----------->RAV1(2)  --------->ANAC46   cttagctaaacctaatcttccccagcttccgatcaaaacacacatcaattcatcactaatccgataccctgaatctctaatctctttaagcaattccata  5770000                            <---------ANAC58                            --------->LBD16                           <---------ZAT18                            <---------LBD16                           --------->ZAT18                      <---------ANAC58              <----------DOF2      --------->HSFB2a(2)          <---------ANAC58             <----------DOF2<---------ANAC58                    <---------ANAC46           ------>NtERF2   <-------TEIL--------->ZAT14      ------>ZmHOX2a(1)       --------->DAG2  --------->DAG2  <---------ZAT18     --------->TOE1(3)   --------->YAB1 --------->ANAC46--------->LBD16          --------->TOE2(3)                  ------- ---------->RAV1(1)   ---------->DOF2 <<<<<<<ZML2         ------>ZmHOX2a(2)               <----------   gacaacaataaggggcctttacgaaaaagtgcgttccctagaacactcttcagagactgatccttagcgtaaaccgggtcgaagttggagacccagaggt  5770100                                                          <---------ZAT14                                                         <---------ZAT6                                                         --------->ALFIN1                                                        >>>>>>>>>TAC1                   <---------ANAC58                ------->TEIL                   <---------ANAC58            <-----------------------TaNAC69(2)            <---------ZAT14                <---------At4g35610                 ----------->GT1 ---->GT1  <---------ZAT6   <---------GLK1(2)----------->TGA1                 --------->ALFIN1 -RAV1(2)<---------ANAC46 <---------YAB1   --------->At4g35610             --------->ATHB12   aaaatcgcagggagtgtaatgggttgtcttgattctgcaaaacgctgatgacgaatcgagtgttgagaccaattcgatgagtggtgaattcttgattcag  5770200                                                             <------MYB46(1)                                                             <------MYB83                                                            <---------MYB46(3)                                                           <---------ANAC46                                                         <------MYB46(1)                                                         <------MYB83                                                        --------->ALFIN1                                                        <---------AtMYB61                                                        <---------MYB46(3)                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                     <------ZmHOX2a(1)           <---------ICU4                         <---------At4g35610                       ---------          <---------ATHB12                      <-----------RAV1(2)             <---------TOE2(3)         ------>MYB83     <---------ANAC58    <-----------HVH21                 <---------TOE1(3)         ------>MYB46(1)  <---------ANAC58  <---------MYB46(3)     ----------->RAV1(2)      <--------   tatcaaaaaccaatcttttctctctatgacttgcgaaatgtaacgctggttcagaggattggtgggtttacctgaagagtttagggtttttgagagctta  5770300                                              <------NtERF2                                             <---------ATERF1(1)                                             ------>NtERF2                                            <---------O2                                            --------->RAP2.3(2)                                            --------->O2                                            --------->DEAR3(1)                                           --------->DEAR4(2)                                           --------->ERF1                                           --------->ATERF1(1)                                           --------->RRTF1(1)                                           <------NtERF2                                           --------->RAP2.3(1)                                          ------>NtERF2                                          <---------ATERF1(1)                                         --------->RAP2.6(2)                                         --------->ATERF1(2)                                         --------->DEAR3(1)                                         <---------ATERF1(2)                                         --------->RAP2.3(2)                                        --------->RAP2.3(1)                                        --------->ATERF1(1)                                       <---------At4g35610                                       --------->At4g35610                                       <---------ATERF1(1)                                       ------>NtERF2                                      <-----------RAV1(1)                                    --------->ZAT2                                    <---------ZAT2                                    --------->At4g35610                                             <                                    <---------At4g35610                                             <                                    ----------->RAV1(2)                                             -                                   <-----------RAV1(1)                                              -          --------->ALFIN1       --------->At4g35610                                          -------       <---------ARR14(2)        <---------HSFC1(2)                                  <---------bZIP60(2)    <---------TOE2(3)            --------->HSFB2a(1)                   ---------->DOF2 ----------->HVH21    --------->ANAC55(2)          <---------At4g35610                --------->ANAC58 --------->bZIP60(1)   <---------LBD16               <---------HSFB2a(1)                --------->ANAC58 <---------ANAC58   <-----------------AGL1        --------->HSFC1(2)         --------->At4g35610      <---------ANAC46 >At4g35610                      <---------ZAT2        <---------HSFB2a(2)           <---------ANAC58 -At4g35610             --------->ATHB12--------->ERF1 --------->HSFB2a(2)           <---------bZIP60(1)   gggtttacggatgtggaagcgtttagtgatttggaagctgctgccgccgtcgctattctagatgctgaagaagcaaagcctctcatgtcgtgaccagaac  5770400    <---------ANAC46                --------->TOE2(3) ---------ZAT2            <------MYB83                   --------->ANAC46                          -- ---------At4g35610       <------MYB46(1)           --------->TOE2(3)           ------------>CBF  <-- -------->At4g35610      --------->MYB59       --------->HSFC1(2)              <---------ARR11(3) --- -------->ZAT2       --------->ATHB12          <---------HSFC1(2)         ------------>CBF       ---- -->MYB52(1)      <------------CBF  --------->TOE1(3)------>ZmHOX2a(1)  --------->ANAC46         <---   ggagctgagtgcaagtgaaacattgatttggtctctaacctcaagacgatgtttcctaaacgacgctgtttaatacaccaatatcaatatgtgttcgaat  5770500      <---------AHL20(2)     <---------AHL20(1)     --------->AHL20(2)     <---------AHL20(2)  <--------ATHB1  <---------ICU4  <---------AHL20(2)  --------->AHL20(2)  --------->YAB1                    --------->DAG2                                                  -  <---------AHL20(1)               ---------->DOF2                                           <------- --------->ICU4                <---------TOE2(3)                                             <------- ------->YAB1            <---------AHL20(2)                   <----------DOF2               <-------GAMYB -------AHL20(2)         --------->AHL20(2)           <------ZmHOX2a(2)                    <---------MYB46(3) ------>AHL20(2)         <---------AHL20(1)          <---------ARR11(3)                   <---------TOE2(3) ----->AHL20(2)          --------->AHL20(1)          --------->ARR11(3)          ---------->DOF2  --- ------AHL20(2)         --------->AHL20(2)       ---------->DOF2     <---------MYB52(2)   <---------YAB1   ttaataattttttttttagtttcagaataaattaagaaaaagtcatgaccaaaaagatcatctcctttgaaacaaacaaaaacaaaagaattttggttga  5770600                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                           --------->ATHB51                                                                                           -------->HAHB4                                                                                           --------->YAB1                                                                                           <---------ICU4                                                                                           <--------ATHB1                                                                                           <--------HAHB4                                                                                          --------->ICU4                                                                                          <---------YAB1                                                                                   <---------ANAC58                                                                            <---------AHL20(2)-------                                                                           --------->AHL20(2) <------ <---------ICU4                                                            <---------AHL20(2)<------- ----->ZmHOX2a(1)                                 <-----------GT1    <---------YAB1<---------ANAC58 -P<---------ATHB12    --------->AtLEC2  <---------YAB1      --------->ATHB12      <---------ANAC46 --WOX13(1)  <------------CBF          --------->YAB1       <---------YAB1--------->YAB1  <---------ATHB51 --->ZmHOX2a(2)    ------>NtERF2      <---------YAB1   <---------CCA1(2)------->TEIL    --------->YAB1   tcctaatgactcttccattgccaccatgaaaatgagggttttcattatagtttatccatctcttgattactatgaattttaattttcttgtaataattat  5770700                                                                                        --------->YAB1                                                                                     --------->YAB1                                                                                    <---------YAB1                                                                                  --------->YAB1                                                                                 <---------YAB1                                                                               --------->YAB1                                                                              <---------AHL20(2) -----YAB1                                                                 <---------AHL20(2) ----AHL20(2)                                                              --------->ARR11(3) --->AHL20(1)                     <---------REM1(1)                        --------->AHL20(2) ----AHL20(1)                 <---------AHL20(2)                           <---------ARR11(3) -->YAB1 --------->ICU4    --------->TOE2(3)         <-----------GT1       --------->AHL20(1) -->AHL20(2)               --------->YAB1         <---------AHL20(2)       <---------AHL20(1) ---AHL20(2)         <-----------GT1              <---------ICU4          --------->AHL20(2)  ------- --YAB1  <---------YAB1 <---------CCA1(2) --------->WRKY38(1)           --------->AHL20(2)  <--------   atttctaagtgataattttctaatttctatcttaaattgtagcattgactaaatatttccatcttcatcttcaaaaatatattatgataatattaagtta  5770800                                                                      ----------->GT1                                                                  <---------AHL20(2)                                             <---------YAB1       --------->AHL20(2)                                          <---------YAB1          --------->YAB1    <---------YAB1                                        <---------ICU4         --------->YAB1     <-----------GT1                   ---------->DOF2      <--------HAHB4       <---------YAB1   --------->ICU4                 <---------AHL20(2)    <---------YAB1        <---------WOX13(1)<---------ICU4 <------                 --------->YAB1   --------->bZIP60(1)      ----------->GT1   <---------AHL20(2)------ -->ARR11(3)     --------->AHL20(2)    --------->ICU4      --------->ATHB12 --------->YAB1    <------ -TOE2(3)  ----------->GT1        <---------bZIP60(1)     <---------YAB1   <---------YAB1     -------   ttgctaatgagagatgtaataaaaagagttgtgatgaagtcattattatgctatttatgtatgattaataatatgttataaaaattactattgcaatata  5770900  Previous    Next  AGI:  At3g16890.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to EMB2745 (EMBRYO DEFECTIVE 2745) [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44880.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5768407    to: 5770386    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g16895.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17155.1); contains domain PD864278 (PD864278) Range:  from: 5770874    to: 5771550    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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