Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                                                         <---------YAB1                            <-                                                         <---------AHL20(2)                        <-                                                      <---------RVE1(1)          <----------DOF2   --                                                     --------->ARR11(3)     <--------P            ---                                          --------->AHL20(2)              <---------ANAC46        <--                                          <---------AHL20(2)        <---------TOE2(3)             <--                                         --------->AHL20(2)       ---------->DOF2<---------DAG2   ---       --------->ETT(2)      --------->ALFIN1        <---------ARR11(3)  <------NtERF2        -------       <---------ETT(2)      <---------REM1(1)       <---------GLK1(2) --------->ALFIN1      --------   aatgaactgtctacatgtaattcaaaacaaggtgtagaatgtattaaattcaaaagatttttattgaataaaggtggggtaagctttttgttttccccca  5710700  <---------AHL20(2)                          <------MYB83  --------->AHL20(2)                          <------MYB46(1) ------->ATHB51                              <---------AtMYB61 -------ATHB1                             --------->ATHB12 -------HAHB4                          <--------P --------ICU4                        <---------ANAC46                        --------->ATHB12 ------->YAB1                        ----------->GT1                        --------->MYB46(3) ------>AHL20(2)                  --------->ALFIN1                      <---------MYB52(2) -------ATHB51                  <---------ANAC46                        <---------MYB59<---------TOE2(3) -------ATHB12                  <---------ANAC58  <------NtERF2        --------->At4g35610 ------>ICU4                    <---------ANAC55(2)         --------->AHL20(2)   --------->ATHB12---- -->LBD16                 <---------YAB1 <---------YAB1 --------->AHL20(2)--------->MYB52(1)    <---- ->ANAC46       <----------DOF2 <---------ANAC58<---------RAP2.6(2)    <---------At4g35610--------->CCA1(2)   ataattaatcttgtatagctttgattctatgaatacgtggggtaagattggtggccaaaaaaataaacacagtagctaaccattgatttgagatttgatt  5710800                                         ------>ZmHOX2a(2)                                       --------->ARR11(3)             <---------YAB1    <---------ARR11(3)             <---------At4g35610          --------->ARR11(3)    --------->ARR11(3)     <---------AHL20(2)                 <---------TOE2(3)   --------->CCA1(1)      <---------AHL20(2)              --------->YAB1   --------->RVE1(1)      --------->AHL20(2)            --------->AHL20(2)                       <--- ----->YAB1         --------->TOE2(3)  <---------ARR11(3)<---------AHL20(2) <---------YAB1      <---- ---TEIL    --------->YAB1<---------AHL20(1)    ---------->DOF2 <---------ARR11(3)              -----   cataaatatctatatcaaaatttcttaataaaattttagatgatctcaaacaaagctatataataagataatttgattatgttttctacatagtataaga  5710900                                                 --------->ARR14(2)                                            ------>ZmHOX2a(2)                                            <---------LBD16                                           <------ZmHOX2a(2)                                          <---------ARR14(2)                                      ----------------->AGL1                                --------->ARR11(3)                                <---------AHL20(2)                                --------->AHL20(1)           --------->YAB1    --------->AHL20(2)<---------MYB52(1)         <---------WOX13(1)--------->AHL20(2) --------->LBD16  --------->ATHB12      --------->AHL20(2)--------->ARR14(2)  --------->LBD16       <---------ANAC46 ---ZmHOX2a(2)        <---------TOE2(3) --------->LBD16      <---------LBD16---------->DOF2 -----ARR11(3)  <---------TOE2(3)     <---------LBD16       <---------LBD16<---------WRKY38(1) ---->ARR11(3)<---------AHL20(2)<---------AHL20(1)       <---------ZAT14   <---------WRKY12   tcactgatttgattaataaatgttaagaaaataatatatagccggatccggtatcggagtaaaccgggagagagaggtcaaagtcgacgtagacgtagac  5711000                                ----------->RAV1(2)                             <---------ZAT18                             --------->ZAT18                          <---------ANAC58                    <----------DOF2                   <---------ANAC46                    <----------DOF2                   <---------ANAC58                <---------ALFIN1                     *TSS       <-                   <---------ANAC58               -------->P                           <---------ALFIN1               --------------------->WRI1         ------>MYB83                         ------>NtERF2               <----------DOF2 ------->TEIL       ------>MYB46(1)                     --------->ANAC46           <---------ZAT18<---------ANAC58      --------->AtMYB61                     --------->LBD16     <-----------RAV1(1)  <---------ANAC46     --------->MYB46(3) ------>ZmHOX2a(1)  --------->LBD16   atagttcatgttgttcactttgctttcttcgtgcacctgtatatcaaaaaccaacaccgtgtgtattcctctctctctctctctctccccgacttttgaa  5711100                                                             <------MYB83                                                            --------->MYB59                                                      <---------TOE1(2)                            --                                                     ------>ZmHOX2a(1)                            ---                                                     ==============================HOX2a_HOX2a   <---                                                    --------->TOE1(2)                           -----                                                    --------->TOE2(2)                           <----             ---------->ID1                     ------>ZmHOX2a(2)                     --------->At4g35610        <---------ARR14(2)                    <---------ARR11(3)               --------->ARR14(2)----        <---------GLK1(2)                     --------->ARR11(3)         --------->ATHB12  --------->GLK1(1)        --------->ARR14(2)                  ------>ZmHOX2a(2)<------MYB46(1)------>ZmHOX2a(2)  <----- ----------GT1     <----------DOF2          ================HOX2a_HOX2a<---------WOX13(1)  <---------GLK1(1)   ttttccctcagatttgtcttcctttgtaatccattttcgctctggatcgatcttcctacgatttggtcttcagattgatcggtttctcatcggaattccc  5711200                                               --------->O2                                               <---------O2                                               <---------TGA1a                                               --------->TGA1a                <------ZmHOX2a(2)                                               <---------ANAC46              --------->AGP1                                       <---------WRKY38(1)                   --------->ARR14(3)                                       <---------WRKY12                      <---------AGP1                                      <------ZmHOX2a(2)                      <---------ARR14(3)                                     <-----------ARR10                       --------->ARR11(3)    <---------ANAC46      <------ZmHOX2a(2) ----------->HVH21                <---------ARR14(2) ------->ALFIN1         =====================HOX2a_HOX2a                     --------->ARR14(2) ------>ALFIN1          <------ZmHOX2a(1) --------->ANAC46    <---------CCA1(1) ------LBD16        ---------->DOF2  <---------ARR11(3)       <---------RVE1(1) ---->LBD16         =====================================bZIP_DOF            <---------ARR11(3) -----LBD16      <----------ID1     <------ZmHOX2a(1)        <---------ARR11(3)              <------ZmHOX2a(2) ----->LBD16   --------->MYB52(1)<---------LBD16 ----------->GT1            <---------CCA1(2)<------- ----LBD16  --------->YAB1=================HOX2a_HOX2a       --------->ARR11(3)------>ZmHOX2a(2)    -   gggggggagtataagcataacgaaaaggatcaaactcaggatcaacgcgacgggagaattggagattttttgtttgctagatcttgaattgagcgatcga  5711300                                                                      <---------SPL7                                                                   <---------MYB46(3)                                                                  --------->ALFIN1                                                                  <---------DEAR3(1)                                                               <---------AtMYB61                                                          ------>NtERF2                                                          --------->LBD16                                                         --------->ANAC58              <-------TEIL                                             --------->At4g35610  <---------AtMYB61 --------->At4g35610                                     --------->At4g35610 --------->ANAC46--------->ANAC46                                     <---------At4g35610 --------->ANAC58--------->ANAC58  ----------                                     ----------->RAV1(2)<---------LBD16  --------->ANAC58 ------>NtERF2 ----------AGL1        <------ZmHOX2a(2)     <---------At4g35610<---------MYB46(3)  <---------At4g35610 -------->MYB59      <---------GLK1(1)    <---------At4g35610  --------->ALFIN1<----------DOF2   attgggtaattggaggtttgaagagatcagagaaatggcatctgagcagttgatgtctcccgccagtggtggtggacgctactttcagatgcagcctgag  5711400                                              --------->ANAC46                                              --------->ANAC58                                              --------->ANAC58                                         ------>NtERF2                                       --------->ATERF1(1)                                       <------NtERF2                                       <---------ZAT2                                      <---------RAP2.3(1)                                      <---------DEAR3(2)                                      ------>NtERF2                                      <---------ATERF1(1)                                     --------->DEAR3(1)                                     <---------DEAR3(1)                                     --------->RAP2.3(2)                                     <---------ATERF1(2)                                     --------->RAP2.3(3)                                     --------->ATERF1(2)                                    --------->ATERF1(1)                                    --------->RAP2.3(1)                                    <------NtERF2                                    --------->DEAR4(2)                                    --------->ORA47(2)                           ---------->DOF2                                   ------>NtERF2   <------ZmHOX2a(1)           <---------------AGL15                                   <---------ATERF1(1)      --------->YAB1     --------------->AGL15                                <---------ANAC58  <---------At4g35610         ----------------->AGL1                                <---------ANAC58<-----------RAV1(2)           =======================        --------------------->WRI1--------->ANAC46--------->At4g35610         ----------------->AG ->RAV1(2)                   <----------DOF2------>ZmHOX2a(1)            <---------ICU4     ------>ZmHOX2a(2)   caatttccttcgatggtctcttcgctcttctctttcgcgccggctcctacgcaggagactaatcgtatttttgaagaattaccaaaagcagtgatcgtct  5711500                  <------NtERF2                                     <-----------RAV1(2)                 ------>NtERF2                                     --------->ZAT2                 --------->LBD16                                  --------->ANAC46                --------->ATERF1(2)                        <---------------AGL15                <---------RAP2.6(2)                       ----------------->AGL1                <---------ATERF1(2)                       ----------------->AGL2<---------CCA1(2)                <---------DEAR3(1)                    <---------ANAC58  <---------ANAC58         <---                <---------ANAC46              --------->ANAC46    --------->ANAC58               ----               <---------LBD16  --------->ZAT14       <---------ANAC58  <---------ANAC58        <----               --------->ATERF1(1)            --------->REM1(1)   --------->ANAC58              <----          ----------->HVH21     <---------ZAT14xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       ------ ==========================================================================MADS_MADS     <----------DOF2   ctgtctctcgccctgatgccggcgatattagccctgtactcttgtcttacaccattgagtgccaatacaagcaggcgagtccatctcttctctttagtag  5711600  Previous    Next  AGI:  At3g16785.1    Description:  PLDP1 (PHOSPHOLIPASE D ZETA1); phospholipase D. Identical to Phospholipase D p1 (PLDP1) [Arabidopsis Thaliana] (GB:Q9LRZ5); similar to PLDP2 (PHOSPHOLIPASE D ZETA 2), phospholipase D [Arabidopsis thaliana] (TAIR:AT3G05630.1); similar to putative phospholipase D-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC00694.1); similar to Phospholipase D/Transphosphatidylase; Pleckstrin-like [Medicago truncatula] (GB:ABN05676.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ49833.1); contains InterPro domain Phospholipase D (InterPro:IPR015679); contains InterPro domain Phospholipase D, eukaryota (InterPro:IPR Range:  from: 5711088    to: 5719029    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version