Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->ANAC58                                                                                --------->ANAC58          <-----------HVH21                                                    <-------MYC3         <---------MYB46(3)                                                    ------->MYC3    --------->ZAT14                                                            <-------MYC2    <---------ZAT14                                                            ------->MYC2   <<<<<<<<<<<<<<<<<LFY      ------>MYB46(1)                                   <-------PIF5  <------NtERF2              ------>MYB83                                      ------->PIF5  --------->ZAT18          --------->DEAR3(1)                             --------->ANAC58 ------>NtERF2             <---------MYB55(2)                             --------->ANAC58 ---------DEAR3(1)         <---------MYB46(2)                           ---------->DOF2           <-- -------->ANAC46           --------->MYB46(3)       ------------>CBF --------->ANAC58             --- ---------ATERF1(2)       --------->ANAC46   ----------->GT1         <----------ID1           <------ ------->RAP2.6(3)<-----------GT1        <---------GLK1(2)           --------->ANAC58         ------- ----->ETT(2) <---------At4g35610        <---------ARR14(2)         --------->SPL7        --------->ICU4 ------ETT(2) --------->At4g35610        --------->ARR14(2)       <---------ETT(2)   --------->O2<---   cgacggcacagtggtcagattaacttccaccgaacaagttttggattcggaaaaaacaatttgaactgtggacgacaagcacgagccaagtgatatttat  5692300         --------->DEAR3(2)        <---------At5g28300                                              ----------->GT1       <-----------GT1                                  <---------AHL20(1)  <---------AHL20(2) --------->ARR11(3)                 --------->AHL20(1)  --------->AHL20(2) --------->GLK1(2)             ----------->GT1     ---------->DOF2 <---------AHL20(2)  <---------ARR11(3)         --------->AtLEC2      --------->AHL20(2) -------AHL20(2)    --------->RVE1(1)       <---------YAB1    <---------YAB1 ------>AHL20(2)    --------->CCA1(1)      <-----------GT1--------->AHL20(1) ---AHL20(2)------>MYB46(1)        --------->AHL20(2)   --------->ARR11(3)                       ---- -->AHL20(2)------>MYB83           <---------AHL20(2)   <---------ARR11(3)                       ---- ------AHL20(2)   --------->AHL20(2)<---------AHL20(2)  --------->ICU4<---------AHL20(2)         ----   ttatttattttaccgactaaaaaaatctttgtagtaatttaaaattttcaatgcagaaaatattatgctaaattaaagtgaatatttgatactaactagt  5692400              --------->TOE1(3)          <---------AHL20(2)         --------->AHL20(1)         --------->AHL20(2)         <---------AHL20(1)                                                                        <-        --------->YAB1                                                                             <-   --------->LBD16                                                                            <------  --------->ANAC58                                                                           <-------  --------->ANAC46       --------->YAB1                                               <---------ARR14(2)  --------->ANAC58      <---------YAB1                       <---------AHL20(2)       <-----------ARR10 <---------LBD16    <----------DOF2            --------->ANAC55(2)                    --------->GLK1(2) ----->WRKY38(1)    <---------DAG2           <-----------GT1--------->AHL20(2)        <---------ARR11(3) ----->WRKY12 --------->YAB1                 <---------AHL20(2)                       --------->ARR14(2) ------->HVH21--------->TOE2(3)    <---------YAB1    ---------->DOF2             --------->ICU4------   tgacccgcaaatataatcttaactttatcatattgttgtgatactatttacatatcaaagtattaaatcccattttccctgtaatgagtatctatttatc  5692500       --------->AHL20(2)    --------->YAB1        <---------ANAC58   <---------YAB1         <---------ANAC55(2)            --------->AHL20(2)             --------->AHL20(2) ---------DOF2            --------->ANAC55(2)          ----------->GT1     <---------DAG2 --------DAG2             <---------ANAC55(1)        ---------->DOF2       --------->TOE1(3)        - -----GT1                <-------TEIL      --------->HSFB2a(2)             --------->TOE2(3)    ----- ----GT1    --------->YAB1<---------ANAC58 <---------HSFB2a(2)<-----------GT1   ----------->GT1 ----- ---->ID1 --------->AHL20(2)            <---------AHL20(2)    <---------ICU4   <---------YAB1   -----   cctttatcataaaataataatccaaaatacgtgctctcttaatttatagaaaaataaaagttaataactatttagaaccttatggtaaaaaaaaatacaa  5692600       --------->ARR11(3)       <---------ARR11(3)      <---------CCA1(2) --------->DOF2                               <---------AHL20(2) ---->ANAC58             <----------DOF2     --------->AHL20(2)                        ---------->DOF2 ---->ANAC46             --------------------->WRI1                               ----------->GT1 ---->ANAC58      <----------TaMYB80         <---------AHL20(2) ---------->DOF2 --------->ZAT14     <   gtaaaagtatatctctaagcattttccctttgaaattttcaaactaattaaatagttaccaaaacaaaaagaagaagggcagaatagtcaaaagagaaaa  5692700                                              <---------ICU4                                              -------->HAHB4                                              --------->YAB1                                              <--------ATHB1                                              <--------HAHB4                                              --------->ATHB12                                              --------->ATHB51                                             --------->ICU4                                             --------->AHL20(2)                 <------NtERF2               <---------YAB1               <---------ANAC58              <---------ATHB51               <---------ANAC58             *TSS                        ------->TEIL              <------NtERF2                <---------ICU4            <---------MYB52(2)            <---------DEAR3(1)             --------->YAB1            --------->ANAC58        <---------TOE2(3)                 --------->ICU4             --------->ANAC46       <---------DOF5.7(2)                <---------YAB1             --------->ANAC58      <---------WRKY38(1)               --------->YAB1        <----------DOF2      <---------WRKY12                 <---------ATHB12       <---------DAG2     --------->DOF5.7(2)               <---------ATHB51   --------->ZAT14    <-----------HVH21               --------------->AGL15 <---------ZAT14                    <-------  --------->LBD16--------->ATERF1(1)<---------------AGL15 --------->ZAT18                 <---------MYB52(1) ---------LBD16<---------ANAC46    ------------>CBF       <---------ZAT18       <-----------HVH21   ctcgcgcgtcaacgttggcgtcgtcttgccaaactttgccaataataataattagacttctgcactttctcacgaacctctctgtctcgtccattactta  5692800           --------->YAB1                                                  --------->LBD16     --------->ARR14(2)                                                   --------->LBD16     <---------ARR11(3)                                                   --------->ANAC46     <---------ARR11(1)        --------->ZAT14                           <---------HSFB2a(2)     <---------ARR14(2)        <---------ZAT18                         --------->MYB52(1)     -------    <---------ARR14(1)         --------->WRKY38(1)                     ------>MYB83          <-------    ------>MYB46(1)            --------->WRKY12                        ------>MYB46(1)--------->GLK1(1)    ------>MYB83             --------->At4g35610        ------->TEIL   -------->P     ------->TEIL  <    <---------CCA1(2)   --------->REM1(1)  --------->WOX13(1)         ------>ZmHOX2a(1)      -------- --ANAC55(2)    --------->At4g35610    <----------DOF2 <---------GLK1(2) --------->HSFB2a(2) <-------   aaaaccaaatctttcatcatcttccttcaccagttgactctctttcaatctatctctgaatctctcactctcctacccgaaaaccatgaactccaacgac  5692900          <---------ANAC58          <---------ANAC46          <---------ANAC58                           --------->ANAC58       --------->ARR14(2)                            --------->ANAC46       <---------ARR14(2)                            --------->ANAC58       --------->GLK1(2)                            ------>MYB83   ------>ZmHOX2a(2)                                ------>MYB46(1)  <------ZmHOX2a(2)                               --------->AtMYB61 --------->ARR14(2)                               --------->TOE1(2) <---------ARR11(3)                         <---------HSFB2a(2) <------NtERF2 <---------ARR14(2)                         --------->HSFB2a(2)----------->GT1   <---------ZAT18 >GAMYB------------------>SPL14          --------->ARR14(2)    --------->RAP2.6(2) --MYB55(2)                              <---------ARR14(2)  --------->At4g35610 --------->ZAT18 ------ZmHOX2a(1)    --------->LBD16   --------->LBD16------>NtERF2      <---------YAB1 ->MYB46(3) <---------MYB52(1)       <---------LBD16--------->SPL7       --------->AtLEC2     ------>ZmHOX2a(1) --MYB52(2) <-----------HVH21--------->MYB46(3)   --------->TOE2(2)    --------->YAB1 --------->YAB1   caggatccgattccgttcagacccgaagacaacaacttctccggttccaaaacctacgccatgagcggcaaaatcatgctaagtgcaatagtaatcctct  5693000                                                                   --------->TGA2(2)                                                                  <-----------HVH21              ----                                                                  <-----------TGA1           <-------                                                                 <---------O2               ---------                                                                 --------->O2              --------->MYB46(3)                                                                 --------->ANAC58          <---------                                          <------MYB46(1)        --------->bZIP60(2)       --------->DEAR3(2)                                          <------MYB83--------->LBD16                    --------->MYB52(1)                                         <---------TOE2(2)       --------->ANAC58       ----------->HVH21                                       <-------GAMYB <---------ANAC58          <------NtERF2------->GAMYB                                      --------->MYB52(2)         --------->ANAC46     --------->ANAC46           --------->AHL20(2)         <---------MYB46(3)<---------ZAT2       <---------DEAR3(1)  ----           <---------AHL20(2) <----------DOF2        <---------ANAC58 --------->At4g35610--------->ARR14(2)     <-----------TGA1        <---------ICU4        ------>ZmHOX2a(1)  <---------At4g35610<---------ARR14(2)   ---------->ID1       ------>ZmHOX2a(1)<---------TOE1(2)      <-----------STF1      --------->RAP2.6(2)   tcttcgtcgtcattttaatggtcttcctccatctttacgctcgttggtatctcctccgtgctcgtagacgtcatctccgtcgtcgtagccgtaaccgtcg  5693100                                     <------NtERF2                                     ------>NtERF2                                     --------->LBD16                                    --------->RRTF1(3)                                    --------->RRTF1(2)                                    --------->RAP2.3(3)                                    --------->RAP2.3(2)                                    --------->DEAR3(1)                                    --------->ANAC46                                    --------->ANAC58                                    --------->RAP2.6(2)                                   --------->RAP2.3(1)     <-------PIF5                                  <---------ATERF1(1)      <-------MYC2                                  --------->ABI4(1)        ------->MYC3                                  ------>NtERF2            ------->PIF5                                 --------->AtMYB61         <-------MYC3                                 --------->DREB2C(2)       ------->MYC2                                 ------->GAMYB            <---------TGA1a                                 --------->DEAR3(1)       --------->TGA1a                                 --------->ANAC46         <---------O2                                 ===================================MYC_MYB                                 <---------ALFIN1         --------->O2                                --------->MYB46(3)        <---------ANAC46                                --------->DEAR3(2)    <----------DOF2                              <---------ALFIN1        ==============bZIP_DOF                           ------>ZmHOX2a(1)      <------NtERF2                       --------->ARR14(2)        <-----------HVH21      <---------MYB46(3) ------>ZmHOX2a(2)      <---------DEAR3(1)                <---------AHL20(2) ----->ANAC58          <---------ARR14(2)       --------->O2                     --------->AHL20(2) ----HVH21         --------->At4g35610          <---------O2                --------->TOE2(3) >DEAR3(1)         <---------At4g35610        <-----------HVH21       ==============================HOX2a_HOX2a ---AtMYB77       --------->DEAR3(1)--------->ANAC58<---------DEAR3(2)------>ZmHOX2a(2)            <- ----->ANAC58   <---------At5g28300--------->RRTF1(1) <-----------HVH21    ----------->GT1   ------>ZmHOX2a(1)   cgctacgatggttttcttcaccgctgatccttccaccgccgcaacttccgtcgtcgcttcacgtggacttgatccaaacgttattaaatctcttcctgtt  5693200  Previous    Next  AGI:  At3g16720.1    Description:  ATL2 (Arabidopsis T?xicos en Levadura 2); protein binding / zinc ion binding. Identical to RING-H2 finger protein ATL3F (ATL3F) [Arabidopsis Thaliana] (GB:Q8L9T5;GB:O24008;GB:Q9LUR1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G15975.1); similar to RING-H2 subgroup RHE protein [Populus alba x Populus tremula] (GB:AAW33880.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5692744    to: 5694133    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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