Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                 ----                                                                                                 ====                                                                                                 ----                                                                                                -----                                                                                              -------                                                                                            <--------                                                                                        <---------At4g35610                          --------->DAG2                                            <-----------HVH21                         ---------->DOF2                                           <------MYB46(1)---                    --------->AHL20(2)  <---------ANAC46        --------->CCA1(2)  <------MYB83 -----                <---------ZAT6 <------MYB46(1)         ----------->RAV1(1)        --------->MYB59----                ----------->GT1----------->GT1        --------->REM1(1)     ---------->DOF2 ---------         <---------ARR11(3)    <------MYB83          <-------TEIL    <------ZmHOX2a(1)<-----------RAV1(2)   ataacattcaagatagtattgttaaaataaagttggtgaaatgtgtgtatataggtacaccagaaggtataggacctgtaaagataggtcagaagataac  5689600                                             <------NtERF2                                            ------>NtERF2                                           <---------RAP2.3(2)                                           <---------DEAR3(1)                                           <---------RAP2.6(2)                                          --------->ATERF1(1)                                         <------MYB46(1)                                         <---------ATERF1(1)       --------->MYB52(1)                <------MYB83      <-----------GT1                   --------->MYB111(2)     --------->MYB46(3)                 --------->MYB46(2)   --------->ARR14(2)                   <---------DEAR3(1)  <------NtERF2                        <---------MYB55(1) --------->LBD16                       <--------P -------->LBD16                       <-------GAMYB -------->RAP2.6(2)                   <---------MYB52(1) -------->RAP2.3(2)                  <---------MYB46(3) --------LBD16                       <---------DEAR3(2) ----->ANAC46                       <---------DEAR3(1) ==========================================MYC_MYB--------->ANAC58 ----->DEAR3(1)                  <---------O2--------->At4g35610 ---->DEAR3(2)                   <---------TGA1a  --------->ANAC58                          <-------- -->MYB52(1)                     --------->TGA1a---------->DOF2                      ---------->ID1 -ARR11(3)                       =============MYC_MYB                              <---------MYB46(3) ------>MYB52(1)                 ===============MYC_MYB      <---------TOE2(3)     <-----------RAV1(1) ---->MYB46(3)=============================bZIP_DOF>>>>>>>>>>>>>>>>>LFY        --------->ATHB12 --->GAMYB    <----------DOF2    --------->O2<---------At4g35610               <--------HAHB4 >ARR11(3) <---------MYB52(1)    ==========================bZIP_DOF           <---------ATHB12   cgccggaatcaccggtctttctgaagttcagttcgacgtcggtaggcggctaaagccattgttgagatagtattttgtgaatcatttgttgtataaactt  5689700                                              <---------YAB1           --------->YAB1                                              --------->ICU4          <---------ATHB12       <-------                                     <---------DAG2                 --------->WOX13(1)    ---------->DOF2                                ----------->HVH21          <---------YAB1    --------->AHL20(1)                               <---------ANAC58-------->HAHB4     ------------>CBF   --------------->AGL15                               <---------ANAC58--------->YAB1<---------GLK1(2)<---------AHL20(2)                   <---------AHL20(2)<----------DOF2       <---------TOE1(3) --------->AHL20(2) --------->YAB1  --------->ANAC55(2)<---------DAG2         <---------TOE2(3) <---------AHL20(1) ---GT1        <-----------GT1<---------At4g35610 <-------TEIL--------->GLK1(2)      <---------ALFIN1   cattcataagagcatttttacttaatttctcttgctgacctttttgtaatgatacatgtttaagattcttcaatcaaaatataatctccacattaagcag  5689800                                                                                     <-----------HVH21                                        --------->AHL20(2)                          --------->ANAC46                                        <---------AHL20(2)                      --------->GLK1(1)                                    <---------AHL20(1)                          <---------GLK1(1)                                    --------->AHL20(2)                         <-----------ARR10                  <---------AHL20(2)--------->AHL20(1)                         ------->TEIL                 --------->AHL20(2) <---------AHL20(2)        <------NtERF2    <---------ARR11(1)           <------------CBF      --------->YAB1               ------>NtERF2    --------->ARR14(2)        <---------MYB59         <---------YAB1              <---------DEAR3(1) <---------ARR14(2)      --------->GLK1(2)      <---------AHL20(2)            <---------LBD16    <---------CCA1(2)   <--   --------->ANAC55(2)      --------->AHL20(2)            --------->ANAC46    <---------ARR14(1)  --- --At4g35610<---------WOX13(1)  <---------AHL20(2)       <---------REM1(2) <-------TEIL<---------DEAR3(1)   agtttaagtatctaattgaattaatacaaattttataattaattaaacgattacaagtctacgcggcgagactcatgttcgtatctccgtcgctgttctt  5689900                                                                                              -------                                                                                              <------                                                                                            ---------                                                                                         --------->ZAT18                    <------MYB46(1)                                                      --------->ZAT14        --------->ANAC46                                                                 <---------ZAT14     <---------ARR14(2)                                                                 <---------ANAC46     --------->ARR14(2)     ---------->ID1     <---------ALFIN1                        <---------LBD16 -------HSFB2a(2)   <------MYB83            --------->AtMYB61                <---------ZAT6---------- ------>HSFB2a(2)  --------->MYB59    <---------At4g35610  <---------At4g35610      <------------CBF   ccacaagtatacgagagaagttaggttttcgtcttcttcaagctcacctccaccatttctctgctcttcttgttgtatagagttcgaattgcgcagtgaa  5690000                              <---------ARR14(2)                              --------->AGP1                              --------->ARR14(2)                              <---------ARR11(3)                              --------->ARR11(3)                             --------->GLK1(1)     --------->At4g35610    ----------->ARR10     <---------At4g35610 <---------ANAC58   <-----------RAV1(2)   <---------ANAC46            --------->ETT(2) -->ZAT14                <---------ANAC58         <---------ANAC46 ---ZAT14          <---------YAB1     <---------RAP2.6(2)   <---------ZAT14<---------YAB1 >At5g28300    <------------CBF<------ZmHOX2a(2)  <---------ANAC58 <---------GLK1(1) ->GT1         <---------GLK1(2)<-------TEIL      <---------ANAC58 --------->GLK1(1)          -------   atgactcagaagacatagattgtgaatgcgtagatccattgcgactgggtttgcgtcgatagtgaagggatttcatcttcatagtcatagacatcgtcta  5690100                  <---------At4g35610                  --------->At4g35610                 <-----------RAV1(1)              --------->ARR14(2)                              <----------DOF2         --------->TOE1(3)                            <---------ARR14(2)        --------->ZAT6                <---------TOE2(3)       <---------DAG2      <-----------GT1             <----------DOF2     --------->ARR14(2)   --------->ANAC58  <---------At4g35610           --------->HSFB2a(2)                    --------->MYB52(1)   <---------ANAC55(2)     ------>ZmHOX2a(1)       <---------HSFB2a(2)           <---------ARR11(3)   --------->ANAC55(2)    --------->TOE2(3)       <---------LBD16                --------->ARR11(3)   --------->ANAC58  --------->At4g35610    <-----------------AGL2               <---------GLK1(2) -->ETT(2)    <<<<<<<ZML2 --------->TOE1(3) <-----------------AGL3       <---------At5g28300   cagataagtaaccctagaactgctgcttccttaagcctttgtggtttctgtttctggattcgagctttttctagttaccgaaagattttgagaaacggtc  5690200                                                                                                <----                                                                                            <--------                 -------->HAHB4               --------->ZAT14                               <--------                 --------->YAB1          <---------TOE1(2)                                  <--------                --------->ICU4   --------->ZAT14                               <-----------GT1<------                <---------ATHB12 <---------ZAT18                       <-----------GT1 --------->ATHB12               <---------TOE2(3) --------->ZAT18       ---------->ID1 --------->YAB1 <---------GLK1(2)     --------->YAB1       --------->ATHB12    <---------ZAT18         --------->ATHB51<---------YAB1   ttcacaatcttcagtttaatgatgctcttgatttgttcactcgtatggttcactctcgtccccttccttcaattatcgatttcactagattattgagtgt  5690300                                                                 <---------ALFIN1                                                             --------->GLK1(1)                                                             --------->ARR14(2)                                                             <---------ARR14(2)                                                         --------->LBD16                                                        ------>ZmHOX2a(1)     --------->ICU4                                     --------->LBD16   ---------->DOF2                                     <---------LBD16 -----YAB1                   <XXXXXXXXXXXXXXXXXXXXXMIR173<---------LBD16 -ANAC58                  <---------YAB1              ----------->RAV1(2) -ANAC46        --------->CCA1(2)                   --------->ARR14(2)     --------------->AtSPL8 -ANAC58       --------->ARR11(1)                  <---------GLK1(1)<---------ALFIN1    <---------ARR11(3) ---ZAT6     ----------->ARR10       <----------DOF2<---------ARR14(2)    <----------DOF2   <--------   tattgcaaagatgaatagatatgatgttgtgatttctctctttgagcaaatgcaaatcctggggattccacctcttctttgtacttgcaatatcgttatg  5690400                                          <---------ANAC58                                          <---------ANAC58                                       <----------DOF2                                  <---------ANAC46                                  <---------ANAC58                                                  <                                  <---------ANAC58                                                ---                           <---------ANAC46               ------->TEIL                 --------->DOF5.7(2)  <---------YAB1           <---------ANAC58            <---------YAB1                <---------ANAC55(2) -MYB52(1)<---------CCA1(2)<---------ANAC58       <---------At4g35610                <---------ANAC46   cattgtgtttgtctatcttctcagccttgtcgtgcttcgtgctttcttgggaagatgatgaaacttggttttgagcctgacttagtcacgtttacttctc  5690500  Previous    Next  AGI:  At3g16700.1    Description:  fumarylacetoacetate hydrolase family protein. similar to fumarylacetoacetate hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G15940.1); similar to unknown [Populus trichocarpa] (GB:ABK96107.1); contains InterPro domain Fumarylacetoacetase, C-terminal-related; (InterPro:IPR011234); contains InterPro domain Fumarylacetoacetase, C-terminal-like; (InterPro:IPR002529) Range:  from: 5687727    to: 5689725    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g16710.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G41170.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5690026    to: 5691549    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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