Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                  ---                                                                                            ---------                                                                                            -------->ATHB1           <------ZmHOX2a(2)                                                                ---------          <---------ARR11(3)                            <------ZmHOX2a(2)                  <---------ATHB51          --------->ARR14(2)                           <---------ARR11(3)                  --------->ICU4          <---------AGP1                  <------ZmHOX2a(2)                                <---------YAB1          --------->ARR11(3)             <---------ARR14(2)                             =============    ----------->HVH21                    --------->ARR14(2)                             ============= -----ATHB12------>ZmHOX2a(2)    --------->AHL20(2)    --------->ARR11(3)               <------ZmHOX2a(1) ->TOE1(2)<---------ARR14(2)  --------->ATHB12     ---------->DOF2                    <---------TOE1(3) ->TOE2(2)--------->AGP1     <---------YAB1------>ZmHOX2a(2)      <---------ALFIN1    <---------TOE2(3)   gatgcgatgacagatctaacaattcgataacatgatttattccgatcggaagaaaaagatcgatagctacacagttcataccgagattaaggaattattg  5670700                            ------>MYB46(1)                            ------>MYB83                           ----------->RAV1(1)                ------>ZmHOX2a(2)               <------ZmHOX2a(2)              <---------AGP1-------->P              <---------ARR14(3)                                                             --------              <---------ARR11(3)                                                            <--------              --------->ARR11(3)                                                            <--------              <---------ARR14(2)                                                       <---------HSFB2a(1)              --------->ARR14(2)                                                       <---------HSFC1(2)      <-----------HVH21   --------->AtMYB61                                            --------->HSFC1(2)  -------->P  <-----------ARR10                                                        --------->HSFB2a(1)  --------->MYB52(1)   --------->REM1(1)                                              <---------TOE2(3) -------At4g35610 --------------->AtSPL8                                              <---------TOE1(3) ------>At4g35610<xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                   <---------TOE2(2) >ATHB51      --------->ARR14(3)                    <-----------GT1         --------->ANAC46<-------- >ATHB12    ----------->ARR10                <---------WOX13(1)           --------->MYB52(1)<-------- ======================HOX2a_HOX2a         --------->ATHB12    <---------MYB46(3)     <---------TOE1(2) =====================HOX2a_HOX2a     xxxxxxxxxxxxxxxx>smallRNA(i)     <---------KAN4(2)   <---------LBD16   agcttaccggtgagaagatcttggtacaccaacatggtcgcttattgattgttttctctctccgatggatgcgaataaacgaaaatcgaaggttgcggga  5670800                  --------->ARR14(2)                  <---------ARR14(2)             --------->ALFIN1           --------->TGA1a           ========================bZIP_bZIP           <---------O2       --------->DEAR3(2)       <------NtERF2       <---------At4g35610   --------->ANAC58                       ----------->GT1   --------->ANAC58                       <------MYB83   --------->ANAC46--------->GLK1(2)      <------MYB46(1)                     ----------->GT1 --------->CCA1(2)<---------GLK1(2) <---------TOE1(2)                        <---------TOE1(3) ->LBD16   <---------TGA1a         ------>ZmHOX2a(1)                         <---------TOE2(3) -ANAC58   --------->O2<---------ZAT14   --------->MYB46(2)       <---------SPL7                 ---- -ANAC58--------->DEAR3(1)         --------------->AGL15         <---------ANAC46               ----- -LBD16--------->At4g35610   --------->MYB59    *TSS             <---------ANAC58      ------------>CBF -ANAC46----------->HVH21<---------TGA1a --------->MYB59         <---------ANAC58     <-----------GT1   gagagacgcagcgacgaggggattctgaagtgaggtcctaagtttggtatttatagtcgaaactatagcgtagggttttcaggtaaatttacaattctcg  5670900                                                                          <---------AHL20(2)        -                                                                   <---------TOE2(3)----------->HVH21     <---------YAB1                                              ---------->DOF2    --------->DEAR3(1)    ------------>CBF                                 <----------DOF2     --------->AHL20(2)        <-   <-----------GT1         ------------>CBF <-----------GT1 <---------AHL20(2)     --------->DEAR3(2) ----->At5g28300   <-----------GT1         <-----------GT1  --------->AHL20(2)    ------->TEIL    <-- ------>GT1     <----------DOF2  <-----------GT1<----------DOF2  --------->MYB52(1)--------->MYB46(3)   gtaaattacaattttgggctttaactgtttccaattttctattttttaccctttccttttttttaaataaaggaaataaatctgaaccgacgcttaatga  5671000                               --------->ALFIN1           --------->MYB52(1)<-----------RAV1(1)          ----------->HVH21  <---------ZAT6      <------MYB46(1)        --------->ALFIN1                            *TSS      <------MYB83          >>>>>>>>>TAC1         <---------ZAT6       ------>ZmHOX2a(1)     --------->MYB59  --------->ARR14(2)   ----------->TBP  ----------->GT1     <---------AtMYB61<---------ARR14(2)   --------->AHL20(2)   --------->AHL20(2)             <----- -------->LBD16    <------NtERF2       <---------ANAC46  <-----------HVH21                 <---------ANAC58 --------ANAC46  --------->ALFIN1      <---------ANAC55(2) --------->ETT(1)           <-------------- -------LBD16 <---------MYB46(3)       --------->ANAC55(2) <---------ANAC46<-----------GT1 <---------ANAC58   gccgggtttggtccaacgggtggggattcgagtgttgggctacgtataaatagtgttcgggtcggataaaatcctatttccctctcttctcttccgtctt  5671100                     ----------->GT1                   <---------ANAC46                   <---------ANAC58               <---------MYB46(3)          --------->YAB1    <------MYB83              <---------WOX13(1)          <---------YAB1     <------MYB46(1) -----DOF2 <---------YAB1         --------->YAB1 <----------DOF2         <-----------HVH21       ---- ----------ANAC81  <---------ANAC58 ----------->TGA1        <---------AtMYB61                    ----   tctcgttctgtttctgattgttcgtgtaaaaccctagaatgacgatgatagctttgaacagggaggtcgaaactcagtcactgaaaaaactcagtctaaa  5671200                                                              ---------->DOF2                                                            ------>ZmHOX2a(1)             ----------->GT1                              ------>ZmHOX2a(2)          --------->ZAT2                                --------->ARR14(2)                   <-------          <---------ZAT2                                <---------ARR14(2)         <---------ANAC58  <---------MYB52(1)                                ----------->RAV1(2)       --------->ARR14(2) <--- <-----------HVH21             <-----------HVH21------>ZmHOX2a(1)    --------->WOX13(1)      -------- ----->GLK1(2)                --------->DEAR3(1)=================HOX2a_HOX2a  <---------ARR14(2) <--- ----->ARR11(3)       <-----------GT1          --------->TOE2(3) ----------->GT1   <---------ANAC58   atctgttagacgagctcgtgaaattttctcccccgtccatggccaatttcctcagcctgatcctgaaaggttaatcaacagtttcgcttgcaatgtccac  5671300           --------->HSFC1(2)      --------->HSFC1(1)      <---------HSFB2a(2)      <---------HSFC1(1)<---------AHL20(2)                                      ---------->DOF2------      --------->HSFB2a(2)   <---------ANAC46                                 <---------At4g35610 --ZAT18   <---------HSFB2a(1)                                               --------->At4g35610 ------DAG2--------->HSFB2a(1)                <<<<<<<<<TBF1           ---------->ARF1      <---------ARR14(2) ->ZAT18   <---------HSFC1(2)       <-----------GT1               <---------ANAC58         --------->ARR14(2) -------DOF2        <---------GLK1(2)<---------TOE2(3)            <---------ANAC58   <---------ARR14(2)   ttttttttctcgaaatttctcagaatttttatgtgtattgacgatttcttcttcttgtctgtttttgttcttgtctcgcagcaaaagaattcggctctgc  5671400                                    <---------YAB1                                 <---------AHL20(2)                                --------->AHL20(2)                            <---------AHL20(2)                           --------->AHL20(2)                           <---------AHL20(2)      --------->DAG2 --------->ARR11(3) --------->DAG2      --------->AHL20(1) <---------TOE2(3)   <---------ARR11(3)          ----------->GT1       <----------DOF2            <-- >NtERF2             <---------AHL20(1)     ------>ZmHOX2a(2)<---------ZAT18         --------->YAB1   cataaggtaagggggttttcgaatattttttaaattttatctttgatcgtgttgaaaattttgttcgcttcttctttgttttgagtttgataatggatag  5671500                                                                             --------->YAB1                                          --------->DAG2                  <----------DOF2                                          <---------TOE2(3)               <---------DAG2                          --------->TOE2(2)                       <---------ANAC58                          --------->TOE1(2)----------->GT1        <---------ANAC46                     --------->WRKY12<---------AHL20(2)           <---------ANAC58      <----------DOF2       --------->ANAC58  ----------->RAV1(2) ----------->GT1<---------WRKY12<---------YAB1    <------       --------->ANAC58 ------->TEIL--------->AHL20(2)      <---------WRKY38(1)        <---------DAG2 --------DOF2    <-----------------------TaNAC69(2)        --------->WRKY18(1)      <-----------GT1   ctttatagcaagcttcagagacgttgaacctgagaaaattttataaggtgtaaatcgaacagtcaatggcttatcacttttatagtttaccttttatctg  5671600  Previous    Next  AGI:  At3g16640.1    Description:  TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN). Identical to Translationally-controlled tumor protein homolog (TCTP) [Arabidopsis Thaliana] (GB:P31265;GB:Q8L973;GB:Q9LUS0); similar to translationally controlled tumor family protein [Arabidopsis thaliana] (TAIR:AT3G05540.1); similar to Translationally-controlled tumor protein homolog (TCTP) (GB:Q944W6); contains InterPro domain Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323); contains InterPro domain Translationally controlled tumour-associated TCTP; (InterPro:IPR001983); contains InterPro domain Mss4-like (InterPro:IPR011057) Range:  from: 5669379    to: 5670848    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g16650.1    Description:  PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2). Identical to PP1/PP2A phosphatases pleiotropic regulator PRL2 (PRL2) [Arabidopsis Thaliana] (GB:Q39190;GB:Q940Q7;GB:Q9LUR9); similar to PRL1 (PLEIOTROPIC REGULATORY LOCUS 1), nucleotide binding [Arabidopsis thaliana] (TAIR:AT4G15900.1); similar to hypothetical protein OsI_011169 [Oryza sativa (indica cultivar-group)] (GB:EAY89936.1); similar to PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95840.1); similar to unknown [Populus trichocarpa] (GB:ABK95731.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); Range:  from: 5671073    to: 5675330    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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