Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------ARR14(2)                                  <---------ARR11(3)                                  --------->ARR11(3)                                  <---------ARR11(1)                                  --------->ARR14(2)                                 <---------CCA1(2)                         --------->ANAC58                         --------->ANAC58                                             <---------ALFIN1                         --------->AtLEC2                                           <---------ALFIN1          --------->GLK1(1)    --------->YAB1                 <----------DOF2      --------->ANAC46       --------->LBD16   --------->ANAC46                 <---------ALFIN1     --------->ARR14(2) ----->DOF2  --------->YAB1  -------->P            <---------ANAC46     --------->At4g35610   aagaaaacccagaaatcatagcattccaagcaaccatatctctcttaggcatttcgtcgaacacctttatagccatctcaagttccccacacttagcata  5657900           --------------->AtSPL3                                   <---------At4g35610          <---------ZAT14                                           --------->At4g35610--------->HSFB2a(2)          --------->ZAT14                     --------->REM1(1) ------->TEIL  <-----------HVH21    -------->P     <-------TEIL--------->At4g35610   --------->ANAC55(2)      --------->TOE2(3)   <--   --------->WOX13(1)  <-------TEIL ---------->DOF2<-----------GT1  --------->ZAT2     <---------HSFB2a(2)   gaaatcaaccagagcagtacatacatacatatcagttgcaaagtcgctacaattcacatgactatgtatcagcttaccatcgtcaattgctcgaagacca  5658000     <----------DOF2            <---------ANAC46 <-------MYC3             ------->TEIL ------->MYC3          --------->ANAC55(2)                                                   <------- <-------MYC2          <---------ANAC46                                                 --------->ANAC46 ------->MYC2          <---------ANAC55(2)                                             --------->HSFB2a(2) ------->PIF4         <-------TEIL <---------TOE1(2)                                   <---------HSFB2a(2) <-------MYC4        <--------P <---------ANAC58                                       --------->LBD16 ------->PIF5     <---------------AtSPL3               <---------At4g35610           <---------LBD16 <-------PIF5     <---------------AtSPL8   --------->ZAT6                       <----------DOF2 <-------PIF4<---------MYB52(2) <---------ANAC58  <---------GLK1(1)             <---------DAG2------- -------ALFIN1 --------->MYB52(1)<---------LBD16  --------->GLK1(1)        ---------->DOF2   --------   gcacatgctttcaaaacaaacgggtacgtatatttcgtgggtctaacaccagaattcagcatcttgtagtacaaatccaaagctttttccgcgaaatcat  5658100                                           ------>ZmHOX2a(2)                                           ==================HOX2a_HOX2a                                      <---------WOX13(1)                                       <-----                                    ==============HOX2a_HOX2a                          --------->ANAC46                                    <------ZmHOX2a(1)                                  --------->bZIP60(2)                             <---------ATHB12                             <---------ANAC58     <-----                            --------->ANAC58                              <---------ANAC46     <----- --ATHB12                   --------->ANAC46                          <-------MYC3   <---------ALFIN1 -->ATHB12                  --------->ANAC58--------->TOE1(2)         ------->MYC3--------->ARR14(2) ->ICU4         --------->YAB1     <---------YAB1     <------ZmHOX2a(1)   <---------ANAC58--------->ATHB12   tcgaagcataggctctgatcatcaaatcccaagcaataggattgatccttggatgaggaatttcatcgaacacatggcgtgcaagttccacttcattgca  5658200          --------->O2          <---------O2          <---------ANAC55(1)          <---------ANAC55(2)          <---------ANAC58          --------->ANAC55(2)          <---------ANAC46          <---------ANAC58     ---------->DOF2  --------->ANAC55(2)                                                                            ----  <---------ANAC55(2)                                                                           <----  <---------ANAC46                          <---------TOE2(3)                     ----------->HVH21  <---------ANAC58                          <---------TOE1(3)                    <---------MYB59-----  <---------ANAC58             --------->ZAT14--------->TOE1(2)                 ----------->RAV1(2) < ----ANAC58               --------->ZAT18  --------->MYB52(1)                   --------->At4g35610 < ----ANAC58     <---------AHL20(2)   <------ZmHOX2a(1)                   <---------YAB1         <---- ----AtLEC2 ----------->GT1    <---------ZAT14--------->TOE2(2)   --------->ARR11(3)  <---------MYB59   tgatgcgtaaagacgtgttaaattgacgagcactgtagaggaacttaacgtaagagagcgtttaagaagatgctgatgaatgacctgacctaagaccaga  5658300                                                                                     ---------->DOF2                                                                                  --------->TOE2(3)         <---------ARR14(2)                                                      --------->YAB1         --------->ARR14(2)                                                     <---------ATHB12 ----->GLK1(2)                                                                 ------>MYB83 -----ARR14(2)                                                                 ------>MYB46(1) ---->ARR14(2)                                                               <---------MYB59 ---------ANAC58                                                             ------->GAMYB ---------ANAC58                   --------->ATHB12                          --------->AtMYB61      - -----GLK1(2)                    <<<<<<<<<<<<<<<<<LFY                       --------->MYB46(3)     --   ttccttgagcgaatacaggtttcaagaagacttagaaacattgggataatggattttaagtttcagacatatgttacaaccaaacatcaaagacttaaaa  5658400          <---------ETT(1)      <---------GLK1(1) <----------ID1      --------->GLK1(1) ----------->GT1                                                         ----- ----------->GT1      ---------->DOF2                                                         ------- -------->DAG2   --------------->AGL15                 ----------->GT1                        <------ -------->DOF2   <---------------AGL15           --------->YAB1  <-----------GT1  <------------CBF   caaaagtgaattccgacaactaaaaaaagaaaaacatgtttcaagaaaaaatcaaaacagttaaatgttactcatcagtgtccatattgcatttgctcag  5658500               <---------HSFC1(2)       <---------ANAC55(2)                               <---------At4g35610           <---------ANAC58      <---------ICU4                                     <---------ZAT2            <---------ANAC58     --------->ICU4                        --------->AtMYB61                       <---------ANAC58   --------->YAB1             <------ZmHOX2a(1)      <---------REM1(1)     <---------ANAC46    <-----  --------->ICU4    --------->HSFB2a(2)    ----------->RAV1(1)     <---------At4g35610 <---------ANAC58 ---->LBD16    --------->HSFB2a(1)         ------->GAMYB --------->At4g35610<---------LBD16   <------ --->CDC5      --------->HSFC1(2)          <---------ALFIN1 --------->At4g35610 --------->ARR14(2) -----RAV1(2)  <---------HSFB2a(1)        --------->MYB46(3)<---------At4g35610 <---------ARR14(2)  -   gggaataataagtaagaagcttcttgaacagaggaacaagtgcaaccacagcaagttgaagctgctcagagctgtttacgcggatgcttacttgccctgc  5658600                                                                                                    <                                                                                                   --                                                                                                 <---                           --------->YAB1                                                       <----                     --------->ANAC58                                                      --------->AtLEC2                     --------->ANAC58                                                      --------->ANAC58                    <-------MYC2                                                           --------->ANAC58                    ------->PIF5                                                      ------>ZmHOX2a(2)                    <-------PIF5                                                     <------ZmHOX2a(2)                    <-------MYC3          <<<<<<<<<<<<<<<<<LFY                      --------->ARR11(3)    <---------MYB52(1)------------>CBF    >>>>>>>>>>>>>>>>>LFY     <-----------GT1  <---------ARR14(2) ----ZAT2   <---------GLK1(2)         <---------ARR14(2)          --------->KAN4(2) --------->ARR14(2) ---ATERF1(1)       ------->MYC2      --------->ARR14(2)         <----------TaMYB80 <---------ARR11(3) ----->ZmHOX2a(1)   ------->MYC3     <------ZmHOX2a(1)       ----------->GT1<---------MYB52(1) ------   tcctctgttattcagattagcacgagcaatgagattagaggaacgtccaatgggtacttgagactgtatattccctccgatagcaagatcgccatgccaa  5658700                                              <---------ICU4                                         --------->ARR14(2)                                         <---------ARR14(2)                                       ----------->GT1                                    ------>MYB46(1)                                    ------>MYB83                                         --------->ARR11(3)                                  ---------->DOF2                                        <---------ARR11(3)                                ------>MYB83--------->GLK1(2)                           --------->REM1(1) -----------HVH21               ------>MYB46(1)                                    --------->ANAC46 ------->WOX13(1)              --------->ORA47(1)    <---------HSFB2a(2)           --------->ANAC58 ------ATHB12                 --------->DEAR3(1)     --------->HSFB2a(2)       --------->AtMYB61----- -----ARR14(2)               --------->DEAR3(2)<----------DOF2       ---------->DOF2  ----------->RAV1(1) --->WOX13(1)       ----------->GT1 --------->MYB52(1)         <---------At4g35610 --------->ANAC58   tccatcacagagagtccaagagttgataaaaaccgaccaagcggataatctttatctcgaaactgagcttctaaagtaccaccataagcaacatctccac  5658800  Previous    Next  AGI:  At3g16610.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61464.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63251.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5656377    to: 5658341    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g16620.1    Description:  ATTOC120 (Arabidopsis thaliana translocon outer complex protein 120); GTP binding / P-P-bond-hydrolysis-driven protein transmembrane transporter. similar to ATTOC132/TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132), transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G16640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47350.1); similar to hypothetical protein OsI_033387 [Oryza sativa (indica cultivar-group)] (GB:EAY79428.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64902.1); contains InterPro domain Chloroplast protein import component Toc86/159; (InterPro:IPR00569 Range:  from: 5658323    to: 5661969    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version