Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->HSFB2a(2)                                --------->TOE1(2)                               --------->HSFC1(2)          ------>MYB83                    --------->YAB1                               --------->HSFB2a(1)         ------>MYB46(1)               --------->AtLEC2                               <---------HSFB2a(1)       --------->TOE2(2)          --------->ANAC58                               <---------HSFC1(2)        --------->TOE1(2)          --------->ANAC58                              ------->TEIL    <---------MYB52(1)                  --------->ANAC58                        --------->ARR14(2)   --------->LBD16                      --------->ANAC58                        <---------ARR14(2)  --------->ANAC55(2)                   --------->ANAC46 -------DOF2           <------ZmHOX2a(1)    <---------ANAC55(2)     ---------->DOF2 --------->ANAC46 -DOF2           <----------DOF2--------->TOE2(2)       <---------HSFB2a(1)       <---------ALFIN1   tttctcactatcaattccactttcaggattcgaaccttcgaaaactccgtaatggagaacctacgatttcaaaagcgaaaacacacacaccattcaaaat  5642300                    --------->ZAT14                    --------->ZAT18                 <---------At4g35610                 --------->At4g35610            --------->GLK1(2)        <---------HSFB2a(2)                  <------ZmHOX2a(2)        --------->HSFC1(1)       --------->MYB52(1)        <---------HSFC1(1)      <---------WRKY38(1)        --------->HSFB2a(2)   --------->ANAC58    --------->KAN4(2)         --------->ANAC46   <---------KAN4(1)<---------ZAT14         <---------ARR11(3)   --------->KAN4(1)<---------ZAT18 ------->GAMYB                            <----------DOF2      ---   --------->HSFC1(2)         --------->ANAC58   <------ZmHOX2a(1)       <---------ANAC58        ----   <---------HSFC1(2)        --------->WOX13(1) <---------YAB1           <---------ANAC58        ----   <---------HSFB2a(1)     <---------ATHB12 --------->ARR11(3)   <-----------GT1         --------->ARR11(3)   --------->HSFB2a(1)   --------->YAB1 ---------->DOF2   <-------TEIL   <---------ANAC46<---------ARR11(3)   ttcgaacattctagaatccatctgcactaatcactcaacgggaaaagatcaggatagagattcaaatatacaattccgtctttcgatcgaacatcttgaa  5642400                                                         --------->DEAR3(1)                                                         <---------ALFIN1                                                         --------->AtMYB61                                                       ------>NtERF2                                                       <---------ATERF1(1)                                                      --------->RAP2.6(2)                                                --------->At4g35610                                                <---------At4g35610                                                <---------ZAT2                                                --------->ZAT2                                               ------>NtERF2                                              <---------RAP2.3(3)                                              --------->ATERF1(2)                                              <---------ATERF1(2)                   --------->LBD16            <---------RAP2.3(2)          --------->ARR14(2)                 --------->RAP2.6(3)          <---------ARR14(2)   --------->AHL20(2)  <---------ATERF1(1)                  <---------ZAT6 -------->GT1      ----------->GT1          --------->MYB52(1)                <---------MYB52(1) ----->ANAC58  <---------ARR14(2)          ----------->HVH21             <---------ALFIN1 ----->ANAC58  --------->ARR14(2)     <---------MYB52(1)--------->MYB46(3)   <-------GAMYB       ----   cggaaaatttcaaatccgaaccggagaaaacaattaaaccggtgtctgacggctggccaccaccttgtggatgaaacaccgttgattctagtattagagc  5642500                                                                          ----------->GT1                                                               --------->At4g35610                                                               --------->ZAT2                                                               --------->HSFC1(2)                                                               <---------HSFB2a(1)                                                               --------->HSFB2a(1)                                                    ----------->GT1 --------->HSFC1(1)             ------>NtERF2             --------->ANAC58        <---------HSFC1(2) <---------ANAC58                      --------->ANAC58  ---------->DOF2  <---------MYB46(3) <---------ANAC58              <---------TOE1(3)   <---------ZAT6   --------->HSFB2a(2)       ------- ----->CCA1(2)----------->RAV1(2)<------ZmHOX2a(1) ----------->GT1  <---------HSFB2a(2)       -------   tatgcgtccatcttgcgcctgaatcagagagtgaaggattcaagcattgagaactgttaaaaaggagcttcgagaatggttactatgaagacgggacctt  5642600                                                                        --------->GLK1(2)          <-                                                                    <------ZmHOX2a(1)  --------->LBD16          --------->GLK1(1)                                      <---------------------WRI1        <-          <---------GLK1(1)                      <---------YAB1  <------NtERF2       <---------LBD16    <------ZmHOX2a(1)                    --------->ETT(2)      <---------DEAR3(1)  <---------ARR14(2) -->TOE1(3)  <---------LBD16             <---------ETT(2)  <-------TEIL--------->GLK1(1)     -------- -->TOE2(3)--------->GLK1(2)<---------YAB1     --------->YAB1<-----------HVH21  <---------YAB1     --   aaataaggagagaaatctggaatgagactgaagattgaacatgtctacatgataatcaagcttcgtcggaggaaaatccatggtgattccggtttccgac  5642700               ------->GAMYB              --------->MYB46(3)           <---------WRKY12           --------->ETT(2)           <---------WRKY38(1)           <---------ETT(2)         <-----------HVH21         --------->At5g28300      ------>MYB46(1)                                                  <-         <--------ZAP1          <---------MYB46(2)          <---------ANAC46                       <-       <------NtERF2     ---------->DOF2            <---------ANAC58                   --------->RAP2.6(2)   <-----------HVH21     --------->ZAT14            --------->ANAC55(2)             --------->ANAC46 <-------TEIL<<<<<<<<<<<<WRKY18 <---------MYB111(1) <---------ANAC58              ---------->DOF2 --- --------GLK1(2)     --------->ZAT6        *TSS    <---------TOE2(3)         >>>>>>>>>>WRKY11     --- --------ARR14(2) <---------WRKY12------>MYB83    <-----------GT1            >>>>>>>>>>WRKY6      <-- --->HVH21--------->WRKY18(1)   <---------MYB59<----------DOF2              --------->WRKY45      <-- ------->ARR14(2) <---------WRKY38(1)  ----------------------->TaNAC69(2)   --------->WRKY38(1) -----   ggattcgtcgcggtcaacagtcaacactaaagtaccaaactattcaaaacttttacgtttctacgtgtatttgtcaagttgactaaaagccgcttctcca  5642800              <---------------AGL15              --------------->AGL15             ----------------->AGL3      --------->ANAC55(2)      <---------ANAC58      <---------ANAC58                                                                 ------>NtERF2    <-----------GT1                                      <---------YAB1                <---------PCF2 --------RVE1(1)                 <------------CBF       --------->AHL20(1)             --------->PCF5 --------CCA1(1)     <-----------RAV1(1)                <---------AHL20(2)             <---------PCF5 ------>ARR14(2)    <---------YAB1<---------WOX13(1)    <---------AHL20(1)             --------->PCF2 ------>ARR11(3)   <------------CBF                   <---------YAB1                   --------->TCP15(1) -------ARR14(2) --------->AHL20(2)          <----------DOF2   <----------DOF2         --------->ATERF1(1) -------ARR11(3)<-----------TBP --------->ATHB12     --------->AHL20(1)       <---------YAB1  ------- ---->LBD16  <-----------------AGL2 --------->ATHB12 --------->AHL20(2)      --------->AHL20(2)<-----   gatattttacgtcttgccatttattgttgggccttgattgtttgggcctttcaaatattatatttctttttttttgagttttaatagggggcccgtttta  5642900                                                                                             <-------GAMYB                                                                                            <--------                                                                                         <----------DOF2                                                                                       <---------YAB1                                                                                      <---------AHL20(1)                                                                                      --------->ARR11(3)                         <---------ZAT14                                              <---------ARR11(3)                         --------->ZAT14        <----------DOF2                      --------->RVE1(1)                     <-----------GT1    ----------->GT1                              --------->CCA1(1) -->AHL20(2)    <----------DOF2      --------->DAG2                               <---------AHL20(2) ----YAB1   <----------DOF2         ---------->DOF2       <-----------GT1        --------->AHL20(2)   atagtctatttggactttctttttctctgtactggacaaaaagggtattacttttatatttttcattactaaatttcagtagatttaatatctttggttg  5643000                                   <---------ANAC46                                 ------->TEIL                            <---------ANAC58                            <---------ANAC46                            <---------ANAC55(1)                            <---------ANAC58                          <---------AHL20(2)                      <---------AHL20(1)                                  --------->TOE2(3)                      <---------AHL20(2)                                --------->ARR14(2)                      --------->AHL20(2)                                <---------ARR11(1)                      --------->AHL20(1)                                <-----------ARR10                   --------->YAB1--------->ARR11(3)                     <---------ARR11(3)                  <---------AHL20(2)                              --------->ANAC46 --------->YAB1 -MYB46(3)    --------->AHL20(2)<---------CCA1(2)   --------->ATHB12   <---------CCA1(2)          ---   agaacaaaattgttgtataaataataaattacttgtatcttgtattttgaagagtcattgaaatttatactccaaatcttagtattcataagaaggaaac  5643100                                           --------->TOE2(3)                                           --------->TOE1(3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------AHL20(2)                 ------               <---------MYB59    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->AHL20(2)               --------->TOE1(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->TOE1(3)   ------               --------->TOE2(3)<---------ALFIN1            --------->AHL20(2)      <---------AHL20(2) -------->GT1------->TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <---------HSFB2a(1)  <-----   gagtaaatcggtgtgaacctaaaattttgtagtcacacctaaaaacctaaaattgcaacgatttaaaaactataaaaccttcgcatataaatccaaataa  5643200  Previous    Next  AGI:  At3g16565.1    Description:  ATP binding / alanine-tRNA ligase. similar to ALATS (ALANYL-TRNA SYNTHETASE), ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G50200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70984.1); contains InterPro domain Alanyl-tRNA synthetase, class IIc; (InterPro:IPR002318) Range:  from: 5640537    to: 5642743    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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