Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------ICU4      ------->GAMYB                                                               --------->ICU4<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <---------AHL20(2)   <-----------GT1                 <----------DOF2           --------->DAG2      --------->AHL20(2)   --------->MYB52(1)               --------->LBD16            ---------->DOF2 ----------->GT1   <---------MYB46(3)      -               ------>NtERF2 --------->MYB52(1)         ----------->GT1     --------->MYB52(2)      <              <---------ANAC46   --------->At5g28300    --------->ALFIN1<---------ANAC46        -----             <---------LBD16----------->HVH21         <---------ANAC58  <---------ANAC58    <--------            <---------At5g28300 ----------->GT1       <---------ANAC58  <---------ANAC58<-----------HVH21   gtttaagagaaaattgccgcgtttttttatctaacggttatacaaaaagtcgtttagggtgtgaaaaaattatcgcgtttgttatttaacggtcacataa  5529100                                          ------>MYB46(1)                                          --------->MYB52(1)                                          ------>MYB83                                         --------->MYB55(1)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                        --------->MYB46(3)                                        <---------MYB55(2)                                       --------->ANAC58                                     <-----------GT1    <---------MYB52(1)            --------->MYB52(2)   <-------GAMYB              <---------ANAC46                         <---------TOE2(3)  ------>ZmHOX2a(2)           <---------ANAC58           --------->ANAC58 <------ZmHOX2a(2)         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------ANAC58 -------->ARR11(3)       <-----------RAV1(1)<---------ATHB12     <---------ANAC46 ---------ARR11(3)   <---------AHL20(2)--------->ANAC58  --------->ANAC58  <-------TEIL ----->DOF2     ----------->GT1   <---------MYB46(3)     --------->ANAC46 --------->CCA1(2) -ANAC55(2) <---------KAN4(2) <---------ANAC58    <-----------GT1<---------ANAC58       ------->TEIL   aagatcgttatgggaatattgaaaaaattgtcgcgtttgttacccaacgattttacaacaagcaattgcgtttaagatacattatagatgaatttccata  5529200                                        >>>>>>>>>RAP2.2                                        <-----------------AGL3                                        <-----------------AGL2                                      <---------ARR14(2)                                      <---------ARR11(1)                                      <---------ARR11(3)                                      --------->ARR14(2)                                      <-----------ARR10                                     <---------CCA1(2)                                   <---------ANAC58                                   <---------ANAC58          --------->YAB1                               <-------GAMYB          --------->ANAC58                               <---------At4g35610    --------->ANAC58                               --------->At4g35610 <---------ZAT18                       <---------AHL20(2)          --------->ZAT18                       --------->AHL20(2)      --------->ALFIN1                <----------DOF2   gttataaattcaatgtttaagctatataatttcagttgcatatctaaatttggggcactctaatcttacttcatttgtgttctttgtctgaaacttgatt  5529300                                                                             <---------ZAT18                                                                             --------->ZAT18                                                                         --------->ALFIN1                                                                         <-----------RAV1(1)                                                                       ----------->RAV1(2)                                                                      <---------ARR14(2)                                                                      --------->ARR14(2)                    --------->TOE2(3)                                 --------->ARR11(3)         --------->ANAC58                 ------>ZmHOX2a(1)           --------->GLK1(2)         --------->ANAC58  --------->ANAC58                          --------->RVE1(1)              -       ---------->DOF2     --------->ANAC58   <---------ANAC58     --------->AHL20(2)               -    <---------HSFC1(1)     --------->ANAC46   <---------ANAC58 --------->AtMYB61     <-----------HVH21    --------->HSFB2a(2)    <----------ID1<---------ANAC58    ======================RAV       --------    <---------HSFB2a(2)---------->DOF2   <---------ANAC58    ----------->RAV1(1)    <---------ZAT6  -   tctattccagaacgcgattttttcttaaaacgccaaacgcggtccttgtcttgttgtctcgtccaccaaaaaaatctggggcactagtgtcacaaaaatc  5529400                                              <------NtERF2                                              --------->ANAC58                                              --------->ANAC58                                             ------>NtERF2               ---------->DOF2               <---------ZAT18         --------->ANAC55(2)                --------->DEAR3(1)         --------->TGA1a                    <---------ANAC58         =================bZIP_DOF          <---------ANAC58         ======================================bZIP_DOF         <---------ANAC58                  --------->ATERF1(1)         ===========================bZIP_DOF<---------ANAC46         <---------TGA1a                   <------NtERF2         --------->O2                     <---------RRTF1(1)         <---------ANAC55(2)              <---------RAP2.3(1)         <---------ANAC46                <---------DEAR3(1)         <---------ANAC58                <---------RAP2.3(2)                         <------ZmHOX2a(1)     <-----------HVH21                   <---------RAP2.3(3)            --------->ANAC46 -------->ANAC58                         <---------RRTF1(3)             <---------ALFIN1 -------->ANAC58                        --------->At4g35610   <------NtERF2       --------->HSFB2a(2) ->YAB1  <---------O2    <----------DOF2<---------At4g35610  ----------->RAV1(1)  --------->LBD16 -------->ANAC46     --------->MYB59<----------DOF2          ------>NtERF2       <---------TOE1(1)   acacgctcgtcgcgtgagaaagttaggcttttgaaatactttagcggcgcgcgattacttaggcgacattacacacacagcctccgaggaacaacaacaa  5529500                                   --------->At4g35610                              --------->YAB1                             <---------YAB1                           <---------ICU4                          <---------YAB1                        --------->YAB1                        <---------ICU4                       --------->ICU4         --------->GLK1(2)            --------->TOE1(3)                       <---------YAB1         --------->ARR14(2)           --------->TOE2(3)                  <------MYB83<---------ICU4  <---------ARR14(2)   --------->LBD16                 --------->MYB59   <---------At4g35610             ----------->GT1           ------------>CBF--------->YAB1     <-----------ARR10   <---------HSFB2a(2)  <------------CBF<------MYB46(1)<-----------RAV1(2)              --------->HSFB2a(2)<---------AHL20(2)   catcgattgtctcgtcaatttggtcatcatcatcatcagatgatggagaatctactggcgaattgtgtccagaaaaaccttaaccattttatgttcacca  5529600                                          <---------TOE2(3)                                      ----------->RAV1(2)                                      --------->At4g35610              <---------ZAT18         <---------At4g35610             <---------ANAC58       <---------------AGL15                                     -------             <---------ANAC58      ----------------->AGL1                                   <--------         <----------DOF2           <-----------------AGL1 <---------GLK1(2)                <---------CCA1(2)   atgctatcttcctttgcgaacttcttctcgcccaatttccatctgaggtatctcgatttcgattcttctatattcaactccatttcgattttcaaatctt  5529700                                                                                                    -                                                                                            <--------                                                                                        ------>ZmHOX2a(2)                                               ---------->ID1                          <------ZmHOX2a(2)                                              <-----------GT1                         <---------ARR11(3)                                          <---------DAG2                              --------->ARR14(2)        <----------DOF2       --------->ARR11(3)                                      --------->ARR11(3)    ---------->ID1    <---------YAB1      <----------DOF2                             <---------ARR14(2)    <---------CCA1(2) --------->ICU4<---------ANAC46                             --------->ARR14(2) - <-------TEIL    --------->bZIP60(1)<---------ANAC58                      <---------AtMYB61 --------- -->TOE2(3)      <---------bZIP60(1)<---------ANAC58             ---------->ID1  <---------ARR14(2) < ---ARR10     <------ZmHOX2a(2)  --------->ALFIN1              <-----------RAV1(1) ------>ZmHOX2a(2)<   agcttcgtctctttcgatcacatcatttttaagatgtggagtgacttttttcgttttctcagtttttgttgctcttgtggtctgatccgatcttctagtc  5529800         <-----------RAV1(1)      <----------DOF2 -------->At4g35610 -HSFB2a(2)         <----------DOF2                                                        <------ZmHOX2a(2) -------->ZAT2<---------ANAC46                                                           <------ZmHOX2a(1) >HSFB2a(2)   <---------ANAC58 <---------ANAC58                --------->GLK1(1)       <---------TOE2(3) ---------ZAT2<---------ANAC58 <---------ANAC58             --------->LBD16            <---------TOE1(3) ---------At4g35610 <---------DAG2 <---------ANAC46       <---------LBD16    <----------DOF2   gtagctgtcttttgttgtgtgactttttgagttgtttgcgaatagacaattctcgatttatgcggagttcaattctgggctttgtttttaaggatcaaac  5529900                                                                                         --------->TOE1(2)                         <------ZmHOX2a(1)                                               <---------LBD16                 --------->GLK1(2)                                                      ----------->RAV1(2)                <---------GLK1(2)                       --------->ARR11(3)          <---------------AGL15             --------->ETT(1)                         <---------YAB1          <---------AHL20(2)            ---------->ID1                      --------->ICU4 <---------At4g35610 ----------------->AGL1   tctatttcgattttgtcggaatctagaggatgcaattcaatttgactgaaatgtttatgattttgagttgattttgtgattttattccaaacctggaatt  5530000  Previous    Next  AGI:  At3g16320.1    Description:  binding. similar to HBT (HOBBIT), binding [Arabidopsis thaliana] (TAIR:AT2G20000.1); similar to Cdc27B [Nicotiana benthamiana] (GB:BAF64847.1); similar to Cdc27B [Nicotiana tabacum] (GB:BAF64846.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 5529540    to: 5534669    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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