Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <-------GAMYB                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                <---------ANAC58                                <---------ANAC46                             <XXXXXXXXXXXXXXXXXXXXMIR2934                             <xxxxxxxxxxxxxxxxsmallRNA(i)                             --------->ANAC46 ----------->GT1                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <xxxxxxxxxxxxxxxxsmallRNA(i)                      <XXXXXXXXXXXXXXXXXXXXMIR782    ---------->DOF2     ----------->RAV1(1)--------->GLK1(2)---------->DOF2      --------->LBD16   --------->TOE1(3) ---------ATHB12 ---------->DOF2<---------ANAC58   <---------YAB1               --------->TOE2(3) ---YAB1  ---------->DOF2 <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <------NtERF2       --------->YAB1   taatgaacaacatgaagccaaaagaaaatccaaggcgtttgcagaaagaggttataaaaggctccgaaatatttcatccgaaccataaacttgttaacac  5500200                                                  <---------At4g35610                                                  --------->ZAT14                                                  --------->At4g35610                                                  <---------ZAT14                                                  <---------ZAT2                                        <-------TEIL                                     <---------TGA1a                                     --------->ANAC58               ----------------->AGL1--------->TGA1a           --------->YAB1            --------->ANAC46          --------->ICU4             --------->ANAC58                    <---------TOE2(3)     <-----          <---------ATHB12         <---------ALFIN1   ----------->HVH21  --------->DAG2  <---------TOE1(3) ---------->DOF2           --------->ICU4    ----------->HVH21      <---------AHL20(2)   <---------TOE2(3) ==============================================bZIP_DOF         <------ZmHOX2a(1)  --------->ICU4   acctaaagaacaatgatgcagtaatgggaatgaatacacacgtccatttgactgctgtgatggaaaggattttataaggtgagaaatttttagggttttg  5500300                                                                                                  ---                                                                                                 <---                                                                                                -----                      --------------->AGL15                        ----------->GT1              -----                      <---------------AGL15                  --------->ALFIN1  <----------DOF2  <----                      --------->HSFB2a(2)          --------->GLK1(2)     <---------ICU4         -----        --------->TOE2(3)                          <---------ARR14(2)    <---------AHL20(2)     <---- <---------YAB1       <---------HSFB2a(2)          --------->ARR14(2)--------->AHL20(2)        ------ ----YAB1 --------->AHL20(2)              --------->YAB1---------->DOF2 --------->ICU4         <-----   attttgaataacttaattagttttctaaaaattgaactaaaaaatcaaaacaaaatccgaaaggaggggaagtaaatatttctttcgaaatttgtggaga  5500400         <---------DAG2         <----------DOF2        <---------DAG2     <-----------GT1                                                       --------->ANAC55(2)    <-----------GT1                                            <---------AHL20(2) --->ZmHOX2a(2)                                                --------->AHL20(2) ---ZmHOX2a(2)                                              --------->AHL20(1) ---->AGP1                                                  <---------AHL20(1)           <---------At4g35610 ---->ARR11(3)                                             --------->AHL20(2)      <---------ANAC46 -----ARR14(2)                                         <---------WRKY12    --------->ANAC46 ---->ARR14(2)                <---------DAG2         <-----------HVH21     --------->ANAC58 -----ARR11(3)                <----------DOF2       ----------->GT1        --------->YAB1--------->At4g35610 --->GLK1(1)             ------>ZmHOX2a(2)      <---------ARR14(2)         --------->ANAC58 ----GLK1(1)           --------->ARR11(3)       --------->ARR14(2)         --------->ANAC55(1)   tctatatttcccttttcaatactttgatctcgcttttttttttttgaaagtatacggtcaaatatataattttctaaacgtaatggggtttagcagcaaa  5500500                                          --------->YAB1                                   <---------At4g35610                                   --------->At4g35610                                 <---------RAP2.6(2)                          <---------RVE1(1)                          <---------CCA1(1)                                                   -------                         <---------ARR11(3)                                                  <-------TEIL                         --------->ARR11(3)                              <----------DOF2 <---------TOE1(3)               <------NtERF2    <---------LBD16  --------->LBD16 <-----------ARR10       --------->MYB59             <---------ANAC46   <---------At5g28300          <------ZmHOX2a(1) <------ZmHOX2a(1)            <---------LBD16    <-----------GT1 <---------LBD16   <---------ARR11(3)      <---------TOE2(3) ----------->GT1        --------->YAB1    <---------ICU4   *TSS  --------->ARR11(3)  <---------------   tagtcgtaaatactggcggaagaaaatgatattttacggctgaatcatcaccggagaatgagaggaagatgttcgcttacaggactctgtttaggttcgt  5500600                                                                                              <------MYB83                                                                                              <------MYB46(1)                                           <----------DOF2                        <---------ANAC58                           --------->At4g35610  <---------YAB1                    <---------ANAC58 --                           <---------At4g35610 <-----------GT1              <-----------GT1 <--------P            --------->AHL20(1)            ------>ZmHOX2a(2)            --------->AHL20(2)  <-------GAMYB            <---------AHL20(2)          <---------ARR11(3)             <---------AHL20(1) <---------MYB46(3)           --------->AHL20(2)           --------->ARR11(3)             <---------AHL20(2) --------->ATHB12 -->MYB52(2)--------->AHL20(2)  --------->GLK1(1) --------->WOX13(1)   --------->AHL20(1) --------->MYB55(2) ---------ANAC81  <---------GLK1(2)    --------->YAB1                 --------->AHL20(2) <---------AtMYB61   tttctcttcaaaaaaaaattgattctttcttctgaattctatgatcttttatcaatctaacaaaacccaaaattttattttcttccttgcgatggttgga  5500700                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)                                                                   -------->ZAP1                                                                  <---------At5g28300                                                                --------->WRKY38(1)                                                                --------->WRKY12                                                                ----------->HVH21                                                               <---------WOX13(1)                                                             <------ZmHOX2a(1)                                                           <---------TOE1(2) --------->GT1     ---------->ID1                <---------ANAC46<---------WRKY18(1)       <---------ARR11(3)   ttagaaaaatcgtttgattttgtcttatttcttctgtttatgtctcatgttgtttgttttgtaggattgaccgtgtatttgggtttacgagtagatgttt  5500800                    --------->AHL20(2)                    <---------AHL20(2)                    <--------ATHB1                    --------->ATHB51                                                                <                    <---------ICU4                                                                 <-                   <---------ATHB12                                                                <-               --------->AHL20(2)                                                            <-------          --------->At5g28300                                                              <---------RVE1(1)          <---------MYB52(1)                                                               <---------CCA1(1)         ----------->GT1                                                                  --------->ARR11(3)     <---------ARR14(2)                                                                   <---------ARR11(3)     --------->ARR14(2)                         --------->ZAT6                          <---------TOE2(3)  --------->YAB1   <---------ATHB51           <-----------GT1    <---------ZAT6   --------->ATHB12 <-   tcaatcgaaaccggtaattcaataatttgttgtctccttggcattttgttactctagtttttggcaagtgttagtctttgtaagtgatttgagatttttt  5500900                                                                ------>ZmHOX2a(1)                                                              ----------->RAV1(2)                                   --------->ANAC46         --------->ARR14(2)                                   --------->bZIP60(2)      <---------ARR14(2) ---------LBD16               <---------ALFIN1       <----------DOF2 --------ANAC58               --------->ANAC46    --------->GLK1(2) --------ANAC58               --------->REM1(1) <------ZmHOX2a(1)                                  -- --AHL20(2)           <-----------RAV1(1)    <---------LBD16--------->ARR11(3)              <-------- --------ANAC46 <---------TOE2(3)<---------ALFIN1<---------GLK1(2)   <----------DOF2      --------->ZAT18   ttcgtggaatttggatttgatgttttgtggctacaccacttcacatttcaggaatcttttagtatcctgagctttaggggaagtgagaagagtgccatgg  5501000                                                                                   <---------AHL20(2)                                                                               <------ZmHOX2a(2)                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                              <---------ARR11(3)                                                                             <------ZmHOX2a(1)                                                                           --------->MYB59                                                                         <--------P--------->AHL20(2)                                                                       <---------MYB46(3)                                 --------->REM1(2)                   <---------ANAC58                                --------->ALFIN1                     <---------ANAC58                              <---------ZAT6    --------->ANAC58     <---------ANAC46  --------->CCA1(2) --------->At5g28300         --------->ANAC58--------->ATHB12------>ZmHOX2a(2) --------->GT1     ----------->GT1              --------->ANAC46<---------ICU4--------->ARR11(3) -ANAC46  --------->At4g35610 <---------ANAC46<---------ALFIN1 <---------MYB52(1)<----------DOF2   atggatataagaagcagaagatggtaaatttagtgtggagacccatctccactcaaacctcttcagttattgctggttaggatctttaatttagcagttt  5501100  Previous    Next  AGI:  At3g16230.1    Description:  RNA binding / catalytic. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45862.1); contains InterPro domain RNA ligase/cyclic nucleotide phosphodiesterase; (InterPro:IPR009097); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088); contains InterPro domain Predicted eukaryotic LigT; (InterPro:IPR009210) Range:  from: 5500559    to: 5503549    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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