Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <-----------HVH21                     <-----------GT1                  ------>MYB83                  ------>MYB46(1)                      --------->WOX13(1)                <---------MYB111(1)            --------->YAB1          --------->ZAT6  ------>MYB46(1)      <--------ATHB1              <---------GLK1(1)          --------------->AtSPL8              <---------ATHB12 --------->At4g35610               ----      <-----------HVH21   ------>MYB83        <---------ATHB51 <---------At4g35610         --------->TOE2(3) -->RAV1(2)     <---------MYB59        --------->GLK1(1)      ----------->RAV1(1)         <---------ICU4   tgcaaaacagtcacagtacctaataaccaagcgtcaaacaaatatccaataatgcatcaatctacagcagataatagaaatctcactattcaacattata  5474700                                       --------->LBD16                                             --                                       ------>ZmHOX2a(1)                                <----------DOF2                                     ------>ZmHOX2a(2)                                  ------>ZmHOX2a(1)                                    <------ZmHOX2a(2)                                  --------->TOE2(3)            --------->At4g35610    <---------ARR14(2)   <----------DOF2      <---------AtLEC2      <-            <---------At4g35610    --------->ARR14(2)   --------->TOE1(3)<---------ANAC58          -- <---------CCA1(2)          --------->ICU4     ------->TEIL              <---------ANAC58      <----- ----->ANAC46     --------->ZAT6   --------->ARR11(3)   --------->TOE2(3)<---------ANAC46      ------   ctcaaatctctatcagcttaacactaagtaattcttggatcctgaaatgaacttacaactttaaacatttggactgcttgcatcgacatcctttgtgttt  5474800                                                                                       <---------ARR11(3)                                   <---------ANAC58                                    --------->ARR11(3) ------->HSFB2a(2)                 <---------ANAC58                                  ----------->ARR10 --------HSFB2a(2)             <----------DOF2                              <------ZmHOX2a(2) ---->ZmHOX2a(1)               ------>ZmHOX2a(1)                           <---------ARR11(3)   ----- ----ARR14(2)      <---------At4g35610             --------->At4g35610    <---------GLK1(1)    <----- --->ARR14(2)      --------->At4g35610 <---------YAB1                 --------->ALFIN1 <---------GLK1(2)   cctcgaagtaatgccttcttcatctgtcttatcctttgcttctgaatgctctctgcttcaaaatcaagaccagtggagatcagagagtagattttggatt  5474900                                                                                                 ----                                                                                                -----                                                                                     <----------DOF2<                        ----------->GT1                                              <---------------AGL15                --------->HSFC1(2)                                                --------->ARR11(3)-                <---------HSFC1(2)                                                <---------ARR11(3)<     <---------------AGL15                                               --------->DAG2         <----     --------------->AGL15<---------ZAT6  --------->GLK1(2)             ---------->DOF2       -------     ================================================================================================MADS_MADS ------>GT1    --------->ANAC58           <---------ARR14(2)         <------ZmHOX2a(1)       <------ZmHOX2a(1) ----WOX13(1)  --------->ANAC58       <------NtERF2          <---------GLK1(1)<------ZmHOX2a(1) <----   gaaattactcaaacgagaagcatctctagtgaaaattggcagagaaactggaacaataccgagaaatcggaggaaaaagaggaagttctttaacaggaga  5475000                                                                                     <---------ANAC58                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)                                                                                <---------ANAC58                                                                                <---------ANAC58                                                                           <---------ARR14(2)                                                                           --------->GLK1(2)                                                                           ---------->TaMYB80                                                                          --------->ARR14(2)                                                                          <---------ARR14(2)                                                                          <---------GLK1(2) ----->GLK1(2)                                                           <------NtERF2 ---->ARR14(2)                                                          --------->LBD16             < ---------LBD16                                    <----------DOF2      <---------RAP2.6(3)  -------- -------->HSFB2a(2)                   --------->ZAT2      <-----------HVH21--------->ARR14(2)<------- ---------HSFB2a(2)        <------MYB46(1)   <---------TOE1(2)         --------->ETT(1) <-----------HVH21 -----GLK1(2)              ----------->GT1  ------>ZmHOX2a(1)          --------->LBD16 ------>ZmHOX2a(1) ---->ARR10                <------MYB83    --------------------->WRI1 <---------LBD16<---------ANAC58 -----ARR14(2)<---------ARR14(2)      --------->At4g35610<-----------RAV1(1)<---------HSFB2a(1)     <   ttctcggaagacgggagatacctccaatttggtgaaaacgagcttcctagggtctttctctgtcgcgattttgccggaatctgcgtttcctgtcatatcg  5475100                                   --------------->AGL15                                   <---------------AGL15                             --------->HSFC1(2)                                  <-----------------AGL1                             <---------HSFC1(2)                             --------->MYB59                                 ========================                     <---------ALFIN1                                        ========================                     --------->ANAC46                                        ------>ZmHOX2a(1)         <---------YAB1      --------->MYB52(2)                          --------->ARR14(2)  ----------->HVH21  --------->ANAC58        <---------SPL7              <---------ARR14(2) ------>ZmHOX2a(1)   --------->ANAC58       <---------ANAC58            --------->GLK1(1)           < ---------ANAC58   ----------->RAV1(1)      <---------ANAC58           ============================== ->ARR14(2)        <---------ALFIN1------>ZmHOX2a(1)                   <------ZmHOX2a(1)  <---------DEAR3(2) --ARR14(2)       <------NtERF2   <-----------------AGL2           --------->ALFIN1  <---------HSFB2a(1) ---------ANAC58--------->ANAC46  --------->TOE2(3)            ------->TEIL --------->TOE2(3)<-------TEIL   gtccttgacacattatagtcgccacacaagttagttcctcaatttggcgaaccgattagagcatgaacggtgaggaatcctcagagaagcgtcgattcat  5475200                                                                                     <---------YAB1                                                                            <---------LBD16                                                                        ------>ZmHOX2a(1)                                                                       <---------MYB59                                                                      ----------------->AGL1                 --------->ARR14(2)                                   <-----------------AGL1          --------->ZAT14                                             ----------------->AGL2          <------ZmHOX2a(2)                                           <-----------------AG          <---------ZAT14                                             ----------------->AGL3        --------->At4g35610                   --------->YAB1          ------>ZmHOX2a(2)     <------ZmHOX2a(2)                     --------->GLK1(1)          <-----------------AGL3<--------   --------->At4g35610                     <---------GLK1(1)          ----------------->AG <--------- ===========HOX2a_HOX2a                    --------->CCA1(2)         <------ZmHOX2a(2)    <--------ATHB1 ======HOX2a_HOX2a           <------NtERF2--------->ARR11(3)        <---------ARR11(3)    --------->ATHB12 ------ZmHOX2a(2)<---------ARR14(2)       <---------ARR11(3)        <---------ARR14(2)   --------->ICU4 ======HOX2a_HOX2a <---------ANAC46 ----------->HVH21               --------->ARR14(2)   <---------YAB1   agatcagatcagatcagtgtatcggagagtcgccatggctgacagatatcagaacaaaaatggaatgctggatcctaattcggaacgatgaatgattgtc  5475300                      <---------At4g35610                      --------->At4g35610                      <---------ZAT2                 --------->GLK1(2)         ---------->DOF2                      --------->ZAT2              --------->DAG2        --------->ARR11(3)       ---- -WOX13(1)           <---------ATERF1(1)        ---------->DOF2       ----------->ARR10        <----- ---CBF  <---------AHL20(2)             --------->ANAC46<---------ANAC46<---------ARR11(3)     ------   tctctctcgattttttttttggccagctccaaggggttttctaagaaacaaaaaggttctgtgaacaacgcgaaggtattcaaaagcgagagagagtgat  5475400                                                                        <---------AHL20(2)                                                                       <---------AHL20(2)                                                                       --------->AHL20(1)                                                                       <---------AHL20(1)                                                                       --------->AHL20(2)                                                                    <---------ICU4                                                                    <---------AHL20(2)                                                                    --------->AHL20(2)                                                                    --------->ATHB51                                                                    <--------ATHB1                                                                   --------->ICU4           <---------YAB1                                      <---------YAB1         --------->YAB1                                        <---------WOX13(1)        --------->ICU4                                       --------->ATHB12       <XXXXXXXXXXXXXXXXXXXXMIR839                          --------->ICU4 -->ZmHOX2a(2)        ----------->TGA1          --------->GLK1(1)--------->YAB1 ----ARR11(3)   --------->ALFIN1            <---------TOE2(3)<---------ICU4 --->ARR11(3) <---------ANAC46             ---------->DOF2  <---------YAB1    <-----------GT1   cttggagggaatgatgatgtgttgatgacgaagatggagttggattaaagaaatctaatttcatgattaataatttaatataacaaaattagtcttctcc  5475500                                      <---------------AtSPL8                                      <---------------AtSPL3                                      --------->DAG2                                    ---------->DOF2                                <----------DOF2                                <---------------AGL15                               <-----------------AGL3                                         ------>ZmHOX2a(1)                               <---------------AGL15                <---------ANAC58    <---------HSFB2a(1)                               --------------->AGL15                <---------ANAC58    --------->HSFB2a(1)                           --------->ANAC46                         <---------ANAC46    <---------HSFC1(2)                        <---------ZAT14                             <---------AtLEC2    --------->HSFC1(2)                        --------->ZAT18                        --------->ATHB12        --------->GLK1(2)                    --------------->AtSPL3                     <---------ICU4          <-----------ARR10                    --------------->AtSPL8              ----------->GT1                --------->ARR11(3)                    <---------------AtSPL8   --------->YAB1   <---------AHL20(2)       <---------ARR14(2)               --------->TOE1(2)--------------->AGL15  --------->DAG2                  --------->ARR14(2)            --------->GLK1(1) ----------------->AGL3  ---------->DOF2                 <---------GLK1(2)         --------->LBD16<---------ZAT18     ----------->GT1   --------->AHL20(2)<---------AHL20(2)       <---------LBD16  --------->ZAT14     <---------ZAT6   <---------YAB1    --------->AHL20(2)  <-   aatgctcaaaccggagacctaagatgtacactccctttaaaaggtactgataaaaaaaaagttattaattgcatgttggcattaaatagaatcttcctct  5475600  Previous    Next  AGI:  At3g16160.1    Description:  transcription factor. similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G25790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65502.1); contains InterPro domain Tesmin/TSO1-like, CXC (InterPro:IPR005172) Range:  from: 5473372    to: 5475096    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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