Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------ARR14(2)                                                                              <---------MYB46(3)            <----------ID1       --------->ANAC58                       <---------ARR11(3)            ----------->GT1      --------->ANAC58                       <---------ARR14(2)    --------->ZAT14            <--------P           --------->ARR14(2)  --------->ARR11(3)   --------->ALFIN1          ----------->GT1        <---------ARR14(2)  --------->ARR14(2)   ------------------------>ANAC81      ---------->DOF2   ---------->DOF2--------->CCA1(2)  <-------- --------ZAT14              --------->DAG2      <---------At4g35610   ----------->ARR10   ---------->DOF2 -->GT1   ---------->DOF2 ---------->DOF2  <---------At4g35610   ---------->DOF2--------->ARR14(2)   atacagtggagaaaaagaaaaacagaacaaaaggtaagtaagtgaagcagagcagatagagaaaggagaaagaagatttgtggttcttctcagaaagaca  5458800                      <---------ZAT18                    --------------->AtSPL8                    <---------------AtSPL8                  --------->DAG2                 ---------->DOF2           --------->KAN4(2)           --------->ARR11(3)         --------->ATHB51           <---------ARR11(3)      --------->YAB1           <---------ARR14(2)      <---------ICU4           --------->ARR14(2)     <---------YAB1          <---------GLK1(1)    --------->AHL20(2)          <---------KAN4(1)    <---------AHL20(2)                     <---------ANAC58 --ID1   ------->TEIL --------->ZAT18<---------YAB1  <-----------HVH21<---------ANAC58            <--   aaaaaaacatgaatatcccaaaagtgtacatgttttattattattgtttattcagtgtcatagaaattagaagcttgagactgaaacacaaacagttttt  5458900                                                                                             --------                                                                                             --------                                                                                           <---------ARR11(3)                                                                                           --------->ARR11(3)                                                                                         <---------AHL20(2)                                                                                     <---------YAB1                                                                                    --------->AHL20(2)                                         --------->GLK1(2)                          <---------AHL20(2)                                  <---------ANAC58                                  <---------AHL20(1)                    <------MYB46(1)     <---------GLK1(2)                          --------->YAB1                    <------MYB83  <---------ANAC58   <---------YAB1<---------KAN4(1)--------->AHL20(1)                <-----------RAV1(1)--------->TOE1(2)--------->AHL20(2)         <---------AHL20(2)         <---------TOE2(3)       <---------TOE1(3)  <---------AHL20(2)         --------->AHL20(2)        ---------->DOF2          <---------TOE2(3)<---------AHL20(2)        --------->AHL20(2)     --     <----------DOF2<---------MYB46(3)----------->ARR10  <-----------GT1    <---------AHL20(2)  <----     --------->TOE2(3)          <-----------GT1   --------->AHL20(2)--------->KAN4(2)<---------AHL20(2) ---------GT1  --------->ICU4 <---------AHL20(2) --------->YAB1    --------->HSFB2a(1)--------->YAB1   tttcttactttaaagtaattgttggtttgcattttaacgtgagattctctatattaatataactcttgaatgttccaattttttaatataataaatctta  5459000                                                                                           --------->AHL20(1)                                                                                           --------->AHL20(2)                                                                                           <---------AHL20(2)                                                                                           <---------AHL20(1)                --------->KAN4(2)                                                     --------->AHL20(2)               <---------KAN4(1)                                                     --------->AHL20(2)               --------->HSFB2a(1)                                                --------->YAB1               <---------HSFB2a(1)                                               <---------YAB1               --------->KAN4(1)                                                 --------->ICU4              --------->ARR14(2)                                              <---------YAB1<--------     --------->ANAC58                                                        --------->AHL20(1)     --------->ANAC46                                                        --------->AHL20(2)     --------->ANAC58                                                        <---------AHL20(1) --------->ANAC55(2)         --------->ICU4<---------ANAC46                  <---------AHL20(2) <---------ANAC55(2)   ---------->ID1      <---------ANAC58               --------->YAB1--------->YAB1 ->TOE2(3)    <---------ARR14(2)           <---------ANAC58            --------->YAB1--------->YAB1 ->YAB1       <---------KAN4(2)          <---------YAB1          --------->YAB1--------->YAB1 ------->AHL20(2)<---------YAB1<---------TOE2(3)                <---------ZAT6<---------AHL20(2) -----ICU4    ---------->TaMYB80 --------->YAB1          <---------TOE2(3)--------->AHL20(2)---------   attacataagccagagaatattcttgttgtattaatgaagatgatgcttgcaactgtataagattactgataacaataatataataataaaaataaaatt  5459100         --------->ALFIN1      <------NtERF2     <---------MYB46(3)    <---------ANAC46    --------->ALFIN1                                         <---------MYB52(1)  <------MYB83                                     <---------ANAC58  <------MYB46(1)                                  <---------ANAC58     ------------>CBF  <---------MYB46(3)                           <------------CBF  <----------DOF2 <---------MYB46(3)                        --------->TOE2(3)--------->LBD16 <---------ATHB12 --------->MYB111(1)                      <---------ZAT6   --------->ANAC55(2)*TSS --------->ALFIN1               <------------CBF  <---------MYB46(3)    --------->MYB46(3) <---------AtMYB61            <---------YAB1  --------->ATHB12   <---------DAG2 --------->MYB111(2)  <------ZmHOX2a(1)   ----------->GT1  --------->ANAC46------>MYB46(1) -AHL20(2)          <---------TOE2(3)   <------------CBF  <---------LBD16  ------>MYB83 >AHL20(2)    <--------P     --------->At5g28300<---------WOX13(1)    <-----------GT1 <---------YAB1   aagttggtggggaggggtagtttaggaaaactgtaattgcagtattgttaattggttgtctccgtaactttttaaccaatcgtttagtatttttgtaaat  5459200                                                                                       <---------ANAC46                                                                                      --------->ATERF1(1)                                                                                      <------NtERF2                                                                                     <---------ERF1                                                                                     ------>NtERF2                                                                                     <---------RAP2.3(1)                                                                                     <---------ATERF1(1)                                                                                     <---------DEAR4(2)                                                                                    <---------RAP2.3(3)                                                                                    <---------ATERF1(2)                                                                                    <---------RAP2.3(2)                                                                                    --------->DEAR3(1)                                                                                    <---------DEAR3(1)                                                                                    --------->ATERF1(2)                                                                                   <---------ABI4(1)                                                                                   <------NtERF2                                                               ---------->DOF2     --------->ATERF1(1)                                                          --------->ARR11(3)     <---------DEAR3(1)                                                          --------->GLK1(2)     <---------HSFB2a(2)                --------->LBD16      ------------------------>ANAC81            --------->HSFB2a(2)               <---------LBD16     --------->MYB52(1)     <---------ARR11(3) <----------DOF2        <              ----------->RAV1(2)---------->DOF2         --------->RVE1(1)  <---------ANAC58 <-------     <---------ALFIN1  --------->MYB46(3)              --------->AHL20(2)   <---------ANAC58 <-------   cgcctctccaccttgcccctggagaaccatcaccaaaaaacagagccaaacaaaaaaaaaaatctaaaagcatcaatggcttctcggcggcgagtgcttc  5459300                              --------->ATHB51                              --------->AHL20(2)                              <---------AHL20(2)                              <---------ICU4          ------>ZmHOX2a(1)                             <---------YAB1         ----------->RAV1(2)                        ----------->GT1         <-----------ARR10            <---------HSFB2a(2)                 --------->ARR14(2)      --------->ICU4    <------MYB83            <---------ARR14(2)      <---------YAB1    <------MYB46(1)         --------->ARR11(3) ----------->GT1       <---------MYB46(3)       <---------ARR11(3) ---------TOE1(3)     --------->ALFIN1  <----------DOF2      <-------TEIL --ANAC58   <---------LBD16  --------->ICU4    <---------CCA1(2) --ANAC58   --------->HSFB2a(2)   <-----------GT1   <---------LBD16       <---------LBD16        ----   tgaaggttataattctcggagacagtgggtaattattttcttctttcgaatatctcctgaatgttcattcattctctctggattttggtttttgaaatga  5459400                                                                                             <-------                                                                                  ------>ZmHOX2a(2)                                                                                 <------ZmHOX2a(2)                                                                                 --------->At4g35610                                                                                --------->GLK1(2)                                                                                <---------ARR11(3)                                                                                <---------AGP1                                                                                <---------ARR14(2)                                                                                --------->ARR14(2)                                                                            <-----------RAV1(2)                                                                           =============HOX2a_HOX2a        <-------GAMYB                                                      ==============HOX2a_HOX2a       <---------MYB46(3)  <------MYB83                             --------->ZAT14        <---------       ------>ZmHOX2a(2) --------->ALFIN1       --------->YAB1 <---------ZAT14  --------->ARR11(3)  <   <---------YAB1        <--------P    ------>ZmHOX2a(1)       --------->ZAT14 <------ZmHOX2a(1)    - --->TEIL<---------MYB52(1)<------MYB46(1)    ------->TEIL <-----------GT1 ------>ZmHOX2a(1) <-------   acattttgatcgttgattttgctcagggttgggaagacgtccttgatgaatcagtatgtattctctatactatagtcctcaggatctgaaaattttcttg  5459500                                      <------MYB46(1)                                   <<<<<<<<<MYB98                                            <------- --------->ATHB12                  <---------MYB52(1)                       -------->P    --------->GLK1(1) --ANAC58                      <----------DOF2                        ---------->DOF2<---------At4g35610 --GT1 <---------MYB52(1)<-----------GT1         ----------->GT1 ----------->GT1     --------->At4g35610 ---------YAB1         <---------AHL20(2) ----------->GT1       <---------ICU4       <---------ZAT2 - -------->ICU4     <---------AHL20(2) <------MYB83              --------->YAB1--------->ATHB12  <---- --ANAC58          --------->AHL20(2)--------->MYB59           --------->ICU4<---------YAB1  <-------   ttatgattcgttttttgttttttaatttatctcctttgttaggtttgtgaatcgaaaattcagtaatcagtataaagctaccattggagctgatttcttg  5459600                                      --------->ANAC58                                      --------->ANAC58                                    <---------AtLEC2                                <----------DOF2                         ----------------------->TaNAC69(2)                  ----------->HVH21                        --------->GLK1(2)                               <---------AHL20(2)                        <---------ARR11(3)        ------->MYC3      --------->AHL20(2) --ANAC58               --------->ARR14(2)        <-------MYC3      <---------AHL20(2) --------->DOF2         <-----------ARR10   --------->YAB1      <---------AHL20(2)         --------->HSFB2a(2) -----WRKY18(1)         <---------ARR14(2)  <-----------GT1     --------->AHL20(2)         <---------HSFB2a(2) --ANAC58              <---------GLK1(2)   --------->MYB46(3)   --------->YAB1  <---------WOX13(1)   accaaagaggtccaaattgatgacagaatcttcactttgcaggtaatcaccatgtgtgttatctaattatatatataatgtgactgatgagttttagaaa  5459700  Previous    Next  AGI:  At3g16090.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G65040.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62198.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5456150    to: 5458972    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g16100.1    Description:  AtRABG3c/AtRab7D (Arabidopsis Rab GTPase homolog G3c); GTP binding. similar to AtRABG3d (Arabidopsis Rab GTPase homolog G3d), GTP binding [Arabidopsis thaliana] (TAIR:AT1G52280.1); similar to Ras-related protein Rab7 (GB:Q9XER8); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078) Range:  from: 5459178    to: 5460796    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version