Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    ------>ZmHOX2a(2)                                                                 <---------GLK1(1)                                                                <---------ARR14(2)                                                                --------->ARR11(3)                                                                <---------ARR11(3)                                                                --------->ARR14(2)             ---------->DOF2                                    <---------AGP1                   <---         <------ZmHOX2a(1)                                     <---------CCA1(2)  <---------ANAC46     <------ZmHOX2a(1)                               <----------DOF2              <-----------RAV1(1)  <---------LBD16                                    <---------DAG2          <---------YAB1  --------   tctctcaggaaggactaaagcttagcattttttgcattcaactagttgaagattacttttcatgtggatctcatacattatgttatgtgggttttgtttc  5455800                                         --------->At4g35610   --------->ANAC58                    --                                     --------->ARR11(3)        --------->ANAC58                   <-- -------DOF2  ---------->DOF2        <---------ARR11(3) --------->TOE1(3)  <---------TOE1(2) <------- -->ID1    --------->YAB1       --------->AHL20(2)      --------->TOE2(3)  <---------TOE2(2)------>ZmHOX2a(1)   ttttgttattcacttataaagttttgaacttggtttaaatatcatcttacatttgcaaccttaacaagccttcttcataggtttcattagagtcctagtt  5455900          --------->ARR11(3)         <---------GLK1(1)         --------->TOE1(3)         --------->GLK1(1)         --------->TOE2(3)       --------->YAB1            ------>MYB83     <---------WOX13(1)          ------>MYB46(1)                                         ------>MYB83 <---------WOX13(1)              -------->P--------->ANAC58                      <---------WOX13(1) ------->ATHB12         <---------ANAC46   --------->ANAC58                    --------->ATHB12 -------YAB1 <----------DOF2   --------->AtMYB61              <----------DOF2 <---------YAB1--------- --TOE1(2)<---------ARR11(3)  --------->MYB46(3)       <-----------GT1  ------>ZmHOX2a(1)------>MYB46(1)   ttgattgaatgatatctttgaagttcgcgtaaaccaacctcaaacaagcctttcaaattacattctttgaagtcctggttttgattgaaccaaatcgtag  5456000                                                         <---------AHL20(2)                                                        ----------->TBP                                              <----------DOF2                              ----------                      --------->ATHB12     --------->ARR11(3)                             -----------          --------->TOE2(3)                <---------ARR11(3)        --------->LBD16--------->YAB1          --------->TOE1(3)       --------->MYB46(3)    --------->AHL20(2)<---------DEAR3(1)     <---          <---------MYB59      --------->WRKY38(1)  ------------>CBF<---------LBD16<---------YAB1---- >YAB1--------->MYB46(3)       --------->WRKY12    --------->ZAT6  ----------->RAV1(2)  ---------->DOF2   tctattgaacaacctaaaaaacattgatttcaattgaccactgaagctctttaacacaataaatagcatccctgggactgcgactataataaaagttaaa  5456100                                                                                                 <---                                                                                            ------>ZmHOX2a(1)                 <------------CBF                                                          <---------ALFIN1                --------->ATHB51                      <------MYB83                       ------>ZmHOX2a(1) ->GT1     ----------->GT1  --------->YAB1           --------->MYB59                 --------->ARR14(2) >GT1<-----------HVH21   <----------DOF2          *TSS<------MYB46(1)                <---------ARR14(2) ------AHL20(2) --------->ATHB12               ---------->DOF2  ----------->GT1     <---------MYB52(1) ----->AHL20(2)<---------YAB1          <------NtERF2 <---------AtMYB61         <---------ALFIN1<-----   aaaatgttgtcaagggtataattggaactttcaaaatagtcggagaactaaaagtttggtcttaatcggaaaaacatagaaacaccgtttcctcctccgc  5456200                                                                <---------AHL20(1)                                                                <---------ARR11(3)                                                       <-------TEIL                 <---------ALFIN1               --------->GLK1(1)                <---------ZAT14                <---------ARR14(2)             ------>ZmHOX2a(1)      <----------DOF2                          --------->ARR14(2)     <---------At4g35610 -------DOF2    --------->ZAT18              <---------TOE2(2)  --------->ARR11(3) ----At4g35610<---------SPL7           ----------->HVH21        --------->AHL20(1)          <--------   ttcttcgtctttccgtcgtccactgtctctctctctctctcgcgacgcagatttcgattcgtcgaatattttagctaatcctctctcttaatctctttga  5456300                     --------->At5g28300                   <------NtERF2                  <------NtERF2                  ------>NtERF2                  <---------ZAT14                  --------->ZAT14                 --------->DEAR3(1)        <---------CCA1(2)                <---------LBD16           ---------->DOF2                --------->RAP2.3(1)     --------->LBD16           <---------GLK1(2)           --------->ANAC46           --------->ARR14(2)          --------->LBD16                                             <-           <---------ARR14(2)         --------->HSFB2a(2)         <---------AHL20(2)            <----   <-----------GT1--------->LBD16     <---------HSFB2a(2)         <---------YAB1         <---------ANAC58 --DOF2--------->LBD16       <----------DOF2        ---------->DOF2   <-----------GT1    <---------ANAC58   acatttttccccaaattcgccgcagtgaatactttctcttcccgtaaatctccaaaaatcgagttttttttattacttctcaattgaatttgcttcttcc  5456400                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                           --------->ARR11(3)                           <--------P                                      <-----------ARR10                          <-------GAMYB                                    <---------ARR14(2)                          <---------ANAC46                                 <---------ARR11(3)                   <---------ANAC58                                        <---------AGP1             --------->ATHB12<------MYB83                                  --------->AGP1    ------>ZmHOX2a(2)    <---------MYB46(3)           ---------->DOF2     <---------CCA1(2)  <---------ARR11(3)   <---------ANAC46  ------>ZmHOX2a(1)            <-----------GT1  --------->ARR11(3)<----------DOF2  <---------ARR14(2)           <----------DOF2 --------WOX13(1)  <---------ANAC58  --------->ARR14(2)   <-----------HVH21--------->ARR14(2)       > -----YAB1 <---------WOX13(1)<------MYB46(1)     <----------DOF2 <---------DAG2                  >>>>   gattgatctcttaattgattcgcttgtgggttggatttgaatcctctcttactttccaaaggtcataccttttcacagatctatctttgaaattgtgaag  5456500                                                                                        --------->ZAT2                                                                                        <---------ZAT2                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                       ----------->RAV1(1)                                       --------->ANAC58                                ==============                                       --------->ANAC58                              <---------At4g35610      >>>>>>>>>TBF1                --------->ANAC58                    --------->AHL20(2)   >>>>>>>>>TBF1                   --------->ANAC46                    <---------AHL20(2)  --------->At4g35610 >>>>>>>>TBF1    --------->ATHB12  --------->ANAC58               --------->At5g28300--------->At4g35610 >>>>>TBF1      <---------YAB1  --------->TOE1(2)          <----------DOF2   --------->AtLEC2   aagaagaagaagaagacgatgattcgactaagaacatacgcaggccttagttttatggcaactttggctgtaatttatcatgcattcagcagcagaggcc  5456600                                                  <---------ANAC58                                           <---------ANAC46                                           <---------ANAC58                                           <------MYB46(1)                                           <---------ANAC58                                           <------MYB83                                          --------->MYB111(2)                                          <---------AtMYB61                                   --------->ARR11(3)                               ---------->DOF2    <---------ANAC58         ----------->HVH21  --------->TOE2(3)<---------REM1(1)                                  <<<<<      --------->TOE1(2)     --------->TOE1(3)<-----------RAV1(1)                                <<<<<     ----------->RAV1(2)  -------->P<------ZmHOX2a(2)                      <---------YAB1       <<<<<   <---------At5g28300    ------->TEIL    --------->MYB46(2)       <------MYB46(1)            <------MYB46(1)  <-----------GT1  <<<<<<<<<GATA-1 <---------ARR11(3)              <------MYB83               ------- ================RAV --------->WOX13(1) <---------MYB52(1)        --------->MYB59             <------MYB83   aattttaccctgcgactgtttatctatcaacctcaaagatcagtttggtgttgcttctcaatatgtgtttggttcttatgcttagtctctggcatttggt  5456700  Previous    Next  AGI:  At3g16080.1    Description:  60S ribosomal protein L37 (RPL37C). Identical to 60S ribosomal protein L37-3 (RPL37C) [Arabidopsis Thaliana] (GB:Q8LEM8); similar to 60S ribosomal protein L37 (RPL37B) [Arabidopsis thaliana] (TAIR:AT1G52300.1); similar to unknown [Populus trichocarpa] (GB:ABK95278.1); similar to unknown [Populus trichocarpa] (GB:ABK93758.1); contains InterPro domain Ribosomal protein L37e; (InterPro:IPR001569); contains InterPro domain Ribosomal protein L37ae/L37e, core; (InterPro:IPR011331); contains InterPro domain Ribosomal protein, zinc-binding; (InterPro:IPR011332) Range:  from: 5454824    to: 5455933    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g16090.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G65040.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62198.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5456150    to: 5458972    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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