Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->ANAC58                                                           --------->DAG2                  --------->ANAC58            --------->AHL20(2)     ---------->DOF2 --------->At4g35610                    <---------GLK1(1)            --------->YAB1      --------->At4g35610<---------ZAT2                        ---------->DOF2      --------->ANAC58       --------->At4g35610   --------->ZAT2              --------->ANAC46      --------->ANAC58       <---------At4g35610   <---------At4g35610     --------->CCA1(2)      --------->ANAC46     --------->YAB1      ------>ZmHOX2a(2)           --------->GLK1(1) -------ARR10           <----------DOF2 <---------MYB46(3)---------->DOF2 --------->ARR14(2)       <-   tctcatctaagcaataaaaaaactcactttcatcagccaaagcgggtgatcgaagctgcaaaaagggaagaacagagatacccacaagaaggaaagccct  5433400                                                                     <-------GAMYB                                                                    ------>NtERF2                                                                    <---------MYB46(3)                                                                  <------NtERF2                                                                  --------->ATERF1(1)                                                                 <---------ORA47(2)                                                                 <---------DEAR3(2)                                                                 ------>NtERF2                                                                 <---------RAP2.3(1)                                                                 <---------ATERF1(1)                                                                 <---------RRTF1(1)                                                                 <---------ERF1                                                                <---------RAP2.3(2)                                                                <---------DREB2C(2)                                                                <---------RAP2.3(3)                                                               --------->ATERF1(1)                                                               <------NtERF2                                                              <-----------HVH21                                                              <---------SPL7               <-----------TGA1                               <---------ATERF1(1)               <-----------HVH21                             <---------DEAR3(1)              --------->bZIP60(2)                            <---------MYB46(3)              --------->ANAC58                            <---------MYB46(3)         --------->ANAC58                                 <------MYB83<----------DOF2    <---------HSFB2a(2)         --------->ANAC58                  ---------->DOF2<------MYB46(1)        ----------->RAV1(1)       <------NtERF2                 ------>ZmHOX2a(1)   <---------AtMYB61       ------>NtERF2     <---------ANAC46 --------------->AtSPL3    --------->ANAC58<---------At1g77200      --------->HSFB2a(2)    <---------LBD16   --------------->AtSPL8    --------->ANAC58<---------DEAR3(1)<------NtERF2 ---------DOF2--------->ANAC58       --------->LBD16  <-----------RAV1(1)       --------->ETT(2)  ---   ccttttggcggaagcaacgtcatactcgtacccatcttcctggtttaaagaagccaatgttggtcgtcggcgcttgaacttggcgacattactcgaacac  5433500                                     >>>>>>>>>TBF1                                   ------------------------>ANAC81                                  >>>>>>>>>TBF1                                                   <--                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <------ZmHOX2a(1)        ---                               >>>>>>>>>TBF1    --------->At4g35610--------->ZAT14               ----                            >>>>>>>>>TBF1     <------ZmHOX2a(1)    <---------ZAT14      --------->ANAC58                      <------ZmHOX2a(1) >>>>>>>>>TBF1             --------->ALFIN1<----------ID1 ---- ------->DOF2       ------------------------>ANAC81 ---------->DOF2--------->REM1(2)    --------->ANAC58   agaagcccaaactgagacgaagaaggagaagaagaagaagaagaagaaggagatgaaaggaatcgagagtgtagaggaacagaagggacgaagcaagagc  5433600                            <---------MYB111(2)                         --------->DEAR3(1)                       <---------ATERF1(1)                       ------>NtERF2                      --------->RAP2.3(2)                      --------->DREB2C(2)                      --------->RRTF1(2)                      --------->RAP2.6(2)                      --------->RRTF1(3)                      --------->RAP2.3(3)                      --------->ATERF1(2)                      --------->ANAC46                      <---------ATERF1(2)                      --------->DEAR3(1)                     --------->RAP2.3(1)         --------->GLK1(1)  <---------MYB111(1)         <---------GLK1(1)------>NtERF2       <------ZmHOX2a(1)<------NtERF2                                  ---------->DOF2    --------->YAB1   --------->ORA47(2)                      --------->ANAC58  <-----------HVH21  --------->ATERF1(1)                     --------->ANAC58 ---------------AGL1 --------->ERF1                       <---------ATHB12    ----------->HVH21 -------------->AGL1<---------ATERF1(1)          <-----------RAV1(1) ------>ZmHOX2a(1) ----->RAP2.3(3)    <---------RAP2.3(1)          --------->ALFIN1   --------->TOE2(3)     <---------ATERF1(1) ----->ZAT18       --------->ANAC46          <---------GLK1(1)     --------->YAB1   ---------->DOF2   cccctatcaggaaacccatcttcgccgccaactacttaagagattggaaatgtgtggcaaatgaagcaatcctaaaatcactgacacaaagcagacccca  5433700                  ======================bZIP_DOF                  <----------DOF2             <---------HSFB2a(1)             --------->HSFB2a(1)            <---------HSFC1(2)            --------->HSFB2a(1)            <---------HSFB2a(1)            --------->HSFC1(2)           --------->ARR14(2)     ----------->HVH21      ---------->DOF2         ================================bZIP_DOF      ==================================bZIP_DOF  <---------------AGL15       <---------TGA1a      ---------->DOF2 <---------------AGL15        <---------ANAC58  --------->TOE2(3) --------------->AGL15        <---------ANAC58--------->GLK1(2) <-----------------AGL3       <---------ANAC46<---------ARR11(3) ----------------->AG  --------->ZAT14        --------->ARR11(3)                        ------>ZmHOX2a(1) ----------------->AGL3<---------ZAT14  --------->TOE1(1)     <---------ANAC58         --------->TOE1(2) ----------------->AGL2--------->ZAT18 <---------LBD16        <---------ANAC58     <---------CCA1(2)   aaacccaaaaaaggaacttcctttgtgtactgacttgtgacctcggaaaatctcaaagaagaatgcttacacaaatctcagagttatatccttcgattac  5433800                     --------->ANAC58                     --------->ANAC46                     --------->ANAC58                     ----------------->AGL1                    <---------TOE1(2)                                      --------->ARR11(3)                   ------>ZmHOX2a(1)                                       <---------ARR11(3)       -                  --------->TOE1(2)                                        --------->ARR14(2)    <---                  --------->TOE2(2)                                        <---------ARR14(2)    <---               --------->ARR14(2)                                         <---------GLK1(1)      <---               <---------ARR14(2)  ---------->DOF2                        --------->GLK1(1)     <----       <---------ARR11(3)    <---------ANAC58                             <---------CCA1(2)     -----       --------->ARR11(3)    <---------ANAC58                    --------->ZAT18                -----      --------->RVE1(1)  <------------CBF      <----------DOF2   ------------>CBF  --------->ICU4<---      --------->CCA1(1)*TSS --------->MYB59    <---------DAG2<------ZmHOX2a(1) ------------>CBF -----   tgaagaaaatatctacaaatcctacgaaattgggtatcaaagactgaaacttttttttgtttaggagggcaatggcatatctgcaattttggaatagttc  5433900                                                                                                 <---                                                                                                 <---       <---------ZAT18              --------->ZAT2                                               ----    <---------ANAC46                <---------ZAT2                                               ----  <----------DOF2              --------->ANAC58                                                 ----- -------->ABI4(2)       --------->YAB1                                                          <---- ------ANAC58          <---------ATHB12                                                         ----- ------ANAC58         ------>MYB46(1)                          ------>ZmHOX2a(1)                ----- ---MYB46(1)          ------>MYB83  <---------At4g35610        ------------>CBF                 <---- -----DEAR3(1)       --------->WOX13(1)                       --------->TOE2(3)                 ----- ---->MYB59        ------------>CBF --------->At4g35610  <---------MYB52(1)                     ===== ---->MYB46(2)    -------->P   --------->ANAC58    --------->ZAT2              ----------->RAV1(2) ---MYB83  <---------MYB59     --------->ANAC46    <---------ZAT2           <-------TEIL        <---- ---->MYB52(2)   <-----------GT1   ------>NtERF2----------->RAV1(2)   <---------LBD16   <---------TOE2(3)   ggtgctttgtgtacataacttaccaatcaaaactcgccagcttagacttcccctgcttcgttatcctcaatctctgggttcgcctggtttaagaaaacac  5434000        <-------PIF4        ------->PIF4        <-------MYC2        <-------PIF5        ------->MYC3        ------->PIF5        ------->MYC2        <-------MYC3                                                        ------>NtERF2       <---------ANAC58                                                     <---------ATERF1(1)       --------->O2                                                        --------->DEAR3(1)       <---------O2                                                       --------->RAP2.3(1)       --------->TGA1a                                                    --------->ATERF1(1)       <---------TGA1a                                                    <------NtERF2       <---------ANAC55(2)                                            --------->MYB52(1)       <---------ANAC58                                              --------->MYB46(3)       --------->ANAC55(2)                                           ------->GAMYB      ------------>OsbHLH66                                          ----------->HVH21 ------->TEIL                                                        --------->DREB2C(2) ----MYC3                                                            ==============================MYC_MYB ----MYC2                                                            --------->At1g77200 --->MYC2 <-------TEIL                                               --------->DEAR3(1) --->MYC3--------->ALFIN1                                           --------->MYB46(3) ---->ANAC55(2)                                                    --------->MYB52(1) -----O2------->MYC4                                              --------->AtMYB61      --------->O2 ---->O2<-------MYC4                                             --------->MYB46(3)      --------->TGA1a ---->ANAC46        *TSS                             <---------MYB52(1)  <---------RAP2.3(1) -----TGA1a<---------ANAC58                          <---------ARR14(2)  ------>NtERF2   <---------O2 ---->TGA1a<---------ANAC58                          --------->ARR14(2)  <---------ATERF1(1) ================bZIP_bZIP                          <---------RAP2.6(3) <---------DEAR3(1) -----ANAC55(2)    ----------->HVH21             <---------At4g35610--------->DEAR3(2)   <---------TGA1a   gtgaacctcacgtgcgtctgtctgaccctaaaatttctctctgtttttctcagccgttctgtctaaaaccaccgacggcgacttcaaatagacgtcggaa  5434100         --------->LBD16       <------NtERF2       <---------LBD16                                                --------->ARR14(2)      ------>NtERF2                                                   <---------ARR14(2)      --------->MYB52(1)                                          ------>ZmHOX2a(2)     <---------ALFIN1                                            <------ZmHOX2a(2)     --------->DEAR3(1)                                <---------ARR14(2)    --------->ATERF1(1)                                ------->TEIL --------->LBD16                --    <------NtERF2                          --------->YAB1       --------->ARR14(2)                ---   ------>NtERF2            --------->ARR14(2)        <---------CCA1(2)                --------->At4g35610   <---------ATERF1(1)      <---------ARR14(2)     ------->TEIL <---------ARR14(2)  --------->HSFB2a(1)  --------->ETT(2)   <---------ANAC55(1)  --------->ICU4   --------->At4g35610      --------->HSFC1(2) ---------->ID1 ----------->GT1         ---------->DOF2--------->ARR14(2)           <---------HSFC1(2)   tttgtcgccaccggagaattgttacatgtgaatcccgttttataaagatgatgtatgtatctgctcgatccggttctgcgaagcgaagcatctcaagtct  5434200                                                                                           <---------TOE1(3)                                    --------->ZAT14                                        <---------TOE2(3)                                    --------->ZAT18                                 <---------WOX13(1)                                 --------->At4g35610                              --------->ATHB12                            --------->ANAC55(2)                                  <---------YAB1                            <---------ANAC55(2)                                  --------->ICU4   <---------CCA1(2)    --------->MYB52(1)     <-----------GT1                 <---------ANAC58 ------->TOE2(3)  <---------AHL20(2)<---------ZAT14                            <---------ANAC58 ------>ANAC46    --------->AHL20(2)<---------ZAT18------>ZmHOX2a(1)         --------->ARR11(3)     <   acctcatctctctcagagatttaaacaaacaggtaatctgcactatttgtttcctctccctcttcgtcgataagcgaaatgtcttgattgtttagggttt  5434300  Previous    Next  AGI:  At3g16000.1    Description:  MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1). Identical to MAR-binding filament-like protein 1 (MFP1) [Arabidopsis Thaliana] (GB:Q9LW85;GB:Q7Y1Z5); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16730.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70924.1); contains domain PD317567 (PD317567); contains domain PTHR23160 (PTHR23160); contains domain PD025234 (PD025234) Range:  from: 5430895    to: 5433823    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g16010.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G06920.1); similar to hypothetical protein OsI_006527 [Oryza sativa (indica cultivar-group)] (GB:EAY85294.1); similar to Os02g0266200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046504.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45926.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5434020    to: 5436270    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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