Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->TOE2(3)                            --------->TOE2(2)                                  <---------ARR11(3)   -                     --------->ANAC58                                --------->ANAC58               < ->YAB1              --------->ANAC58                                --------->ANAC58    ----------->RAV1(1) ->TOE2(3)           <---------TOE2(3)                               --------->ANAC46 --------->ANAC46 >MYB46(3)    --------->AHL20(2)                             <---------ICU4    --------->GLK1(2) <--- -ATHB12    <----------DOF2 --------->TOE1(2)             --------->YAB1       --------->ARR11(3)----   gacaatgtgtgattctttaaatcaaggaaacctaagttaacatgctactgcaattgaaattgataatgaacacgagacaaaaatctagaggcaacaagag  5410700                                          --------->YAB1            <-------MYC2           ------>ZmHOX2a(2)            ------->MYC3     --------->ANAC58            <-------MYC4     --------->ANAC46        --------->ZAT14            <-------MYC3     --------->ANAC58    <---------------AtSPL8 -------->ARR14(2)         <---------ALFIN1    --------->YAB1 ---------ARR14(2)       <---------At5g28300  <---------YAB1                                       -- ------ANAC46    <-----------GT1  <------ZmHOX2a(2)  <---------ZAT14                        <-------- ------->GT1------->MYC2<-----------GT1  <---------ATHB12                                   ---------   cgtatatatgagcacatgttaacaattcaccacgcgatcgcaaatcatatgatagtacagaagaaatttgaaatcaaaaaccccaaactaattcagcaaa  5410800                                        --------->ANAC58                                        --------->ANAC46                                        --------->ANAC58                                    --------->ANAC58                                    --------->ANAC58                                  ---------->DOF2                                 <---------ARR14(2)                                 <---------GLK1(2)          --------->At4g35610    --------->ARR14(2)         --------->GLK1(2)     --------->LBD16                              ----------->GT1        <---------GLK1(2)     --------->HSFB2a(2)                           <---------ANAC46      ---       <------ZmHOX2a(1)      <---------HSFB2a(2)                <-------TEIL                  ------ ------->ANAC46               <---------HSFC1(1)       <---------STY1(2)   <------NtERF2      ------- -At4g35610           --------->At4g35610         --------->GLK1(2) ---------->DOF2  --------->AHL20(2) >At4g35610           <---------At4g35610     --------->YAB1  ----------->GT1--------->LBD16---------   cacaaaacaggaatctgaagaaacagctaattccagaaacgcacacaaggataatctagcaaggaggttcaaaaggagccgtagaaaaaaaatccaacaa  5410900                                                                                        --------->MYB52(1)                                                                                       <---------WRKY38(1)                                                                                       <---------WRKY12                                                                                  <-------TEIL                                  <---------ZAT14                                --------->ARR14(1)      --------->YAB1              <---------ZAT2                                 --------->GLK1(2)     <---------YAB1               --------->ZAT2           --------->DAG2       --------->ARR11(1) ---->GAMYB                --------->ZAT2<---------At4g35610                    --------->ARR14(2) ----->RAV1(1)             <---------ZAT2--------->At4g35610        ----------->GT1  ------>NtERF2 -->MYB46(3)               --------->ZAT14                ---------->DOF2       <---------GLK1(2) -->RAV1(1)                <---------ZAT14   ----------->GT1--------->DAG2      <---------ARR14(2)   cagaactatgacaaaaccctaagaaccagagcagcgagcagtgagatgagtatatagaagaaaagggaattagaaaaatccagattcggccaacgagacc  5411000                    --------->ARR11(3)                    <---------ARR11(3)              <-------TEIL             --------->GLK1(2)             --------->At4g35610             --------->CCA1(2)             <---------At4g35610                          ----------->GT1             --------->ARR14(1)         --------->At4g35610                             <---------ZAT6            <---------GLK1(2)   --------->ANAC58            <------NtERF2             ----------->GT1            --------->ARR11(1)  --------->ANAC46           --------->LBD16       --------->ALFIN1            --------->ARR14(2)  --------->ANAC58         <---------LBD16        ------>NtERF2            <---------ARR14(2)---------->DOF2           --------->MYB52(1)     --------->DEAR3(1)          ----------->ARR10  --------->WRKY18(1)        ------>NtERF2       ------>ZmHOX2a(2)          <---------YAB1--------->MYB52(1)----------->RAV1(1)              <------ZmHOX2a(2) --------   agcgagaaaatgaagattcggagaacttacggacaagcaaggagcagcagaaaaaccctgccggagcaagaagagagatcgccgaggggagtgataaaag  5411100                <<<<<<<<<<<<<<<<<LFY               --------->At4g35610               <---------At4g35610      --------->GLK1(2)      <---------ARR14(2)      <---------ARR11(1)      ------->TEIL    ----------->GT1                                     <---------CCA1(2)    <-----      --------->ARR14(2)                                                <---------AHL20(2)    <------      <-----------ARR10             <---------AHL20(2)                  --------->AHL20(2)   <-------     <---------ARR14(1)       ----------->GT1     <---------AHL20(2)  <-----------TBP    <-----------RAV1(1) -->DOF2   <-----------HVH21  --------->YAB1     *TSS               <---------YAB1     <------------CBF   agaaaacgaatcttgtcagcacattggaaaaatggtaataaatcgagtttatatttttgtattatttgttatatttatatccaaatcgatattgttgctg  5411200         ----------->GT1<---------TOE2(3)         --------->ANAC58        <---------TOE1(2)        <---------TOE2(2)     <---------ANAC46                    ----------->GT1                  --  <---------WRKY38(1)  <-----------GT1                  <---------At4g35610                       <-- ----YAB1--------->ANAC58--------->ANAC55(2)        <---------ANAC58                 <---------ARR14(2) ---ANAC46        --------->ARR11(3)           <------------CBF<---------MYB46(3)    <---------GLK1(2) --At4g35610      <---------ARR11(3) <-----------GT1<---------ANAC58                 --------->ARR14(2)   atagtcatcgcatgtaataagatgtttacgttttgtatataacatgttgtattgtcgtagctcatttgttgtaaaatacttcttgcagatttgtatagct  5411300        <----------DOF2                               ---------->DOF2        <---------DAG2 ------>ZmHOX2a(1)             --------->AHL20(2)                 ----------->RAV1(1)     <-----------GT1  --------->TOE1(3)              <---------AHL20(2)                 ------->TEIL --------->GT1        --------->TOE2(3)        ----------->GT1                 <---------AHL20(2) -------TOE2(3)<------ZmHOX2a(1)        ---------->DOF2       ---------->DOF2  --------->AHL20(2) ---   aatgttataactttataggacaatccttaactaagttattcaaaaagagtggaaattaaagtgataaaggcttccaaagaattatatatgcaccagaaat  5411400                                                                                     --------->TOE2(3)                                                                                    --------->ATHB12                                                                                    <--------HAHB4                                                                                    --------->YAB1                                                                                    -------->ATHB1                                                                                    <---------ICU4                                                                 <-----------HVH21 <---------YAB1                        ----------->GT1                         <----------DOF2    --------->ICU4         --------->At4g35610                               <-----------GT1         <---------ATHB12         <---------At4g35610                           --------->YAB1<---------At4g35610   --------->ICU4  ---------->DOF2                     --------->AHL20(2)     --------->TOE2(3)     - -------->GT1 --------->GLK1(1)      <-----------GT1  <---------YAB1 --------->At4g35610--------->MYB52(2)   ttgtaattttgagctgaaatctaaagcagaaaatttgtataactctctactgtgttataatatactctttcagatgaaaaccacaatcattagttgaaaa  5411500                                                                                                    -                                                                                                -----                                                                                               ------                                                                                             --------                                                                                        ------>ZmHOX2a(2)                ------>ZmHOX2a(1)                                                       -------------               --------->TOE2(3)                                                       <------ZmHOX2a(2)               --------->TOE1(3)                                                      <---------ARR14(2)          ------>MYB83     ------>MYB83---------->ID1                                 ------->TEIL <-          ------>MYB46(1)  ------>MYB46(1)             --------->MYB46(3)=====================HOX2a_HOX2a   ----------->RAV1(1)   --------->MYB46(3)            <---------MYB55(2)------>ZmHOX2a(1)  <XXXXXXXX  --------->ANAC46       <---------ALFIN1<----------DOF2                 ======================HOX2a_HOX2a -------->AtMYB61        --------->AtMYB61   <-----------GT1    --------->GLK1(2)     --------->ARR14(2)   aaccacaacaccaaattccttaatccaccaatcccatcttcgtctttatactctccatccaccaagaatcgattcctgctacaaaatggatccaaaaata  5411600  Previous    Next  AGI:  At3g15970.1    Description:  Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein. similar to Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52380.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59845.1); contains InterPro domain Pleckstrin homology-type (InterPro:IPR011993); contains InterPro domain Ran Binding Protein 1; (InterPro:IPR000156); contains InterPro domain NUP50 (Nucleoporin 50 kDa) (InterPro:IPR015007) Range:  from: 5408803    to: 5411149    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g15980.1    Description:  coatomer protein complex, subunit beta 2 (beta prime), putative. Identical to Coatomer subunit beta'-3 [Arabidopsis Thaliana] (GB:Q8L828;GB:Q9LW87); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.2); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G52360.1); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45935.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59846.1); similar to Range:  from: 5411369    to: 5418547    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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