Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ------>ZmHOX2a(2)          --------->At4g35610          <------ZmHOX2a(2)         <---------AGP1         --------->ARR11(3)         <---------ARR11(3)         --------->ARR14(2)         <---------ARR14(2)         --------->GLK1(2)         <---------WRKY12        <------ZmHOX2a(1)          <---------WRKY38(1)  --------->ANAC58                --------->WRKY18(1)  --------->ANAC58               <-----------HVH21  --------->ANAC46              <------MYB46(1)                      ------>MYB83               <----  --------->bZIP60(2)           <------MYB83                --------->At5g28300  --------->ARR11(3) ---------ALFIN1        <---------ANAC58               <-----------------------TaNAC69(2)    -------- ----->ANAC58           <---------ANAC58           ----------->GT1   -------->P  <---------ARR11(3) ----->ANAC46         <---------WRKY18(1)      ----------->HVH21     ------>MYB46(1) <---------O2  <- ----->ANAC58        ----------->HVH21 ------->GAMYB ----------->HVH21          --------->YAB1  <----   caccacggcaggatctgaaacgcttgacttgggaaggtcaacccaagaagggacagtgacacagtaactccaaccagttcgatgatcatgtggccaaacc  5386600                                                                                            ---------                                                                                            ---------                                                                                          ------>MYB83                                                                                          ------>MYB46(1)                                                                                  --------->ATHB12                                                                                  <---------ICU4 -----ANAC58              <---------ZAT6                  <---------ARR14(2)      --------->YAB1   <- ->MYB52(1)             <---------At5g28300               --------->ARR14(2)     <---------YAB1<----- ----------HVH21       <-----------GT1               --------->MYB52(1)          --------->ICU4<----- -----ANAC58------>ZmHOX2a(1)                 --------->YAB1     <---------KAN4(1)-------->HAHB4 ----   gtgtcccttccttcctaagacaaatttacagttagaaacaaattccaaacagaatcaacgaattcgaatattgcagagagaaaatgattaccaaatgacg  5386700                                                                    ----------------------->TaNAC69(2)                                                             --------->GLK1(1)                                                          --------->LBD16                                                         <---------ANAC46                                                         <---------DEAR3(1)                                                        <------NtERF2                                                        --------->ATERF1(1)                                                        ------>NtERF2                                            --------->O2<---------At4g35610                                            <---------ANAC46----------->ARR10                                       ------>MYB46(1) <---------RAP2.3(1)                               =======================MYC_MYB<---------At4g35610                               ------->GAMYB--------->TGA1a --------->ARR14(2)      --------->GLK1(1)       <---------ANAC46        <---------RAP2.6(2)  <------ZmHOX2a(1)         <---------DOF5.7(2)       <---------DEAR3(1) -->HVH21                   --------->MYB52(1)  <------NtERF2<---------GLK1(1) -->TGA1                   ----------->HVH21<---------TGA1a <---------ARR14(2)      <---------ARR14(2) -----ZmHOX2a(1)      --------->LBD16  ------>MYB83   <---------RRTF1(2)           <---------MYB52(1) ----bZIP60(2)       <---------HSFB2a(2)    <---------O2<---------LBD16         <---------LBD16  ---- ----ANAC46          --------->HSFB2a(2)  <-----------HVH21<------NtERF2------->TEIL--------->ARR14(2) ----->ALFIN1       <---------LBD16  --------->AtMYB61<---------RAP2.3(2)    ----------->HVH21<------   aggaggagaactccaatccattcccagaggtaacggagacctcccgtcgtggcgatgcggcggagatgctcttgaatctgtgtccggttctcgtccatta  5386800                             <------NtERF2                             --------->At5g28300                           <---------DEAR3(1)      ----------->HVH21  <---------RAP2.3(1)    --------->TGA1a     <---------RAP2.6(2)    --------->O2        <---------RAP2.3(2)    <---------TGA1a     <---------RRTF1(3)                                   <-----------HVH21    <---------O2        <---------RRTF1(2)                                   --------->At5g28300   --  <-----------HVH21    <---------At5g28300                      <------ZmHOX2a(1)             ------- ----->At4g35610       <---------LBD16                       <-----------RAV1(2)         <---------ANAC58 ---MYB52(1)   <---------ANAC46                       ---------->DOF2  <------ZmHOX2a(1) <---------ANAC58   gctccgtcgtgactgtagctcgtattacggcggtaatcgtcttcttcgccttggaagaaagggccaggagagaggaagcggtgagatagtggctcgccga  5386900                                           <---------ANAC58                                           <---------ANAC58                                           <---------ANAC46                                          <---------ZAT18                                        --------->TOE1(2)                                        <---------SPL7                                       <---------ANAC58                                       ------>ZmHOX2a(2)                                       <---------ANAC58                                     --------->ARR11(3)                                     <---------ARR11(3)                         --------->HSFB2a(2)                                                       --    --------->LBD16      <---------HSFB2a(2)                                                  <------ --------->HVH21      <<<<<<<<<<GATA-1<------ZmHOX2a(2)       <----------DOF2                 ------- -->DEAR3(1)  <---------YAB1     ---------->DOF2      <-------TEIL<-----------GT1         <----------DOF2   agggaccggagacgttgtaattgaaatcgagaagagaaagatcgtgcgcgtatagattcatttcctttctactctcttgattccttcttctcctttctcg  5387000                                                                                  --------->ZAT14                                                                         <----------DOF2 ---->ZmHOX2a(2)                                  ------->GAMYB         <---------ANAC58 ---HSFB2a(2)    --------->YAB1                 -------->P              <---------ANAC58    <-------- -->HSFB2a(2)  *TSS                           --------->MYB46(3)   <---------MYB52(1)     --------->ANAC55(2)   atctctctctatcaaacaaacaaaatttgctctctctgtgttcttggagcaaccgagtcaaaacgctccgttttgctttctcagtttagtttatgtaatt  5387100                                                   <---------ATHB12                                                 --------->WOX13(1)                                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           <---------ANAC58                                           --------->ANAC55(2)                                <------                                           <---------ANAC46                               --------->At5g28300                                           <---------ANAC58                              xxxxxxxxxxxx                                       <---------ANAC58       ----------->RAV1(1)        ----------->GT1     ----------->GT1                   <---------ANAC58      --------->ANAC46           <---------DEAR3(1) -AHL20(2)          --------->ANAC46 <---------MYB46(3)      ----------->HVH21  <----------DOF2   tgataagtagtaatttcacaacaagtcgctctcgtctagtggtttgcgtattaatcaatttgtgcgacacgagttcgatcgactttaagagcggtgaaga  5387200                                                                    <---------At4g35610                                                               ----------->RAV1(2)                       ----------->HVH21                      <---------SPL7                        <                       <------NtERF2                         <---------ANAC58                       <                      <-----------HVH21                      <---------ANAC58                       <                      <---------RAP2.6(3)                    <---------ANAC46                       <                     --------->ANAC46                      <---------ZAT18                       ----                     --------->RAP2.6(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <----              <---------ANAC55(2)               <---------YAB1<---------RAP2.6(3)              <-----              --------->ANAC58               ----------->TGA1xxxxxxxxxxxxxxxx>smallRNA(s)      <-----              <---------ANAC46               ----------->HVH21------>NtERF2                    <-----              --------->ANAC58           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <-------GAMYB             <---------LBD16             ------>MYB83      --------->ZAT18                --------->LBD16           ----------->HVH21             ------>MYB46(1) ------->PIF5                 --------->ARR14(2)         --------->ANAC55(2)            --------->MYB52(1) xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ANAC46 ---YAB1 <---------ANAC55(2)       ------>ZmHOX2a(1)     <-------PIF5   <----------DOF2 <---------LBD16 xxxxxxxxx>smallRNA(se3)           ----------->HVH21 xxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ARR14(2)   tagaacaaattatgtgacggaagccgtcacagtcgtcctgaccaactgtgacgatagcaagtgccgtctgagctcttttttttttttggttccggttgag  5387300       <-------GAMYB      --------->MYB55(2)                                                                     <-------      --------->MYB111(2)                                                                    <-------      <---------MYB46(3)                                                                    ---------    <---------ANAC58                                                                        ---------    <---------ANAC58                    ----------->HVH21                                   ---------    <-------GAMYB                   <------MYB83                                            <-------- ---------ANAC46                    <------MYB46(1)                                         ========= ---------ANAC58                   --------->MYB59                             ------->GAMYB<-------- ---------bZIP60(2)          <---------LBD16      <---------YAB1               ====================== ---------ANAC58         ----------->HVH21      --------->YAB1        --------->YAB1 --------->ARR14(2) ------->HVH21       ---------->DOF2<---------DEAR3(2)           ------------>CBF  <------NtERF2 -----WOX13(1)     <---------MYB52(1)  --------->SPL7      ----------->RAV1(1)--------->MYB46(3) ----ANAC58       --------->LBD16--------->ARR14(2)       --------->ANAC58   --------->RAP2.6(3) ----ANAC46     <---------LBD16  <---------ARR14(2)       --------->ANAC58  --------->MYB52(1)     <- ----ANAC58   <---------ARR14(2) <---------MYB52(1)   <------ZmHOX2a(1)  --------->YAB1  ------>ZmHOX2a(1)   tgacttggttgttgaacatccggtaatgcgacccggttcggttcgaccgattatgaggagacgacagaacaataaacataacggccgagtcctcccgtca  5387400 ----TGA1                 --------->ARR11(3) ----HVH21        <---------ICU4 >TGA1a          <---------YAB1 >ANAC46      <---------YAB1                                                         --------->ZAT14 >O2 <---------ZAT2 <---------YAB1                             ------>MYB83          <---------ZAT14 -O2 --------->ZAT2<------------CBF                    --------->ANAC46    <----------DOF2 =====================bZIP_DOF                        <---------------------WRI1 --------->ZAT6 -TGA1a--------->ZAT18    <---------GLK1(2)         --------->TOE1(2)<---------ARR11(3)         ----- =MYC_MYB  <----------DOF2<---------ARR11(3)   <---------YAB1  ------>MYB46(1) <-----------GT1<------ ----------HVH21 --------->ICU4              <---------At4g35610     --------->ARR11(3)       -------   ctgtccgagctcgcttttgattattgtagatttttatgtgtttttggagatgattctgcgaaacccactaaaatctccttttaactctgaactatcgatc  5387500  Previous    Next  AGI:  At3g15920.1    Description:  phox (PX) domain-containing protein. similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G32160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62698.1); contains InterPro domain Phox-like; (InterPro:IPR001683) Range:  from: 5383602    to: 5387015    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g15930.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62697.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5387450    to: 5389696    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version