Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->ANAC46                --------->ANAC58                --------->ANAC58              <-----------GT1        <---------ARR11(3)        --------->ARR11(3)                     <---------AHL20(2)       *TSS <-----------GT1                <---------GLK1(2)       <------ZmHOX2a(1)        --------->ARR11(3)                               --------->YAB1     <---------TOE1(3)          <---------ARR11(3)                              <---------YAB1     <---------TOE2(3)         --------->CCA1(1)                            --------->ANAC55(2)   --------->CCA1(2)           --------->RVE1(1)                   ---------->DOF2    <----------ID1   tcaagataaggatttttcacaccacaaatacaaatatctactatagaatttttttcttacacatacaaacaaagacttaagtatcatagagacaaatatc  5358600                                                              --------->YAB1                                                        <---------TOE2(3)                                                    <----------DOF2             <---------ARR11(3)                    --------->TOE2(3)             --------->ARR11(3)<----------DOF2   ---------->ID1           --------->MYB59 ---------->ID1       <-----------GT1  ---------->DOF2   aaatttgaaatgtaaggtctatggaacatgtccctttcactcttgggatttttcctttaatgaataagaaagaatgggctcaaaaccaaaataagcccat  5358700                                       <---------ANAC46                                       <---------ANAC58                                       <---------ANAC58         <---------ATHB12       <---------ARR14(2)         --------->ANAC46       --------->WOX13(1)       --------->ICU4             --------->ANAC58    <---------At4g35610     <------ZmHOX2a(2)     --------->ANAC58          <----------DOF2     <----------DOF2    <---------ARR11(3)     --------->ANAC58       <-----------GT1  <---------LBD16        -----------    --------->ARR11(3)   ---------->DOF2  --------->ATHB12 --------->ANAC58    --------->At4g35610   tcaagagatcaatgagcccaattgtttgaaagcaaatattggggtgatttgttaactttccaagaaaaacacgggcttttcagcaaaacaactcgaaaaa  5358800                                                                                            ---------                                                                                       --------->LBD16                                                                                      --------->ANAC46                                                                                      --------->ANAC58            --------->LBD16                                                           --------->RAP2.6(2)           <---------ANAC46                                                    <---------ARR11(1)          <---------LBD16                                                      --------->ARR14(2)          ------>ZmHOX2a(2)                    <---------ARR14(2)              <---------ARR14(2)         --------->CCA1(2)               --------->ANAC58                      --------->GLK1(2)         --------->ARR14(1)    <---------ALFIN1--------->ARR14(2)              <-----------ARR10         <------ZmHOX2a(2)    ==============================================================MADS_MADS        --------->ARR14(3)    --------------->AGL15                         <---------------AGL15        <---------ARR14(2)    <---------------AGL15                         --------------->AGL15   -        --------->ARR11(1)   ----------------->AGL1                        ----------------->AGL1  <-        <---------ARR11(3)   <-----------------AGL1                        ----------------->AGL2  <-        <---------ARR14(3)   ----------------->AG                          ----------------->AG    --        --------->ARR11(3)   ===============================================================MADS_MADS        --------->ARR14(2)   ----------------->AGL2                        <-----------------AGL2  --       <---------HSFB2a(1)   <-----------------AG                          ----------------->AGL3  <-       <---------GLK1(1)  ------->GAMYB --------->WOX13(1)              <----------DOF2<---------RAP2.6(3) >GT1 ----------->ARR10--------->MYB52(1)--------->ANAC58           ------>ZmHOX2a(1) --------->ANAC58   ttgaagagaagatccgggttttagataactgccccaaattggcaatccaaatccctaaaaccatcttatcctctctttccaaatctagccgcaatgtagt  5358900                                      <---------bZIP60(1)                                      --------->bZIP60(1)                             --------->TGA1a                             --------->ANAC58                             --------->ANAC58                             --------->ANAC46                      <------ZmHOX2a(2)                     --------->ARR11(3)                     --------->AGP1   --------->YAB1                     --------->ARR14(3)                     <---------ARR14(3)      ----------->RAV1(1)    <---------TGA1a                                                      ---     --------->MYB46(3)------>ZmHOX2a(2)                                                    <-------- >ZAT14              <---------ARR14(2)                                            ------>MYB83<----- -------->LBD16      <---------ARR11(3)                                            ------>MYB46(1)--- --------ANAC55(2)   --------->ARR14(2)                                          --------->DEAR3(1) --------ANAC46 ----------------------->TaNAC69(2)                               --------->MYB46(3) ------->ANAC55(2) ----------->ARR10<-----------HVH21        <---------------------WRI1<---------MYB52(1) ------->O2 ---------->DOF2  --------->O2                 <------------CBF      --------->DEAR3(2)--- --------O2 ===========================bZIP_DOF          <---------ICU4    ---------->DOF2<----------   cccgtgaaccacaaaaaagatgagatcttgcacgtctctgtcatcacaactagtactactaattgtgaagcatacaaaaaagaccgacccttatttatac  5359000 ------>ANAC46 -AHL20(2) <---------TOE2(3)                                                                  <------ ----REM1(2) <---------AHL20(1)                                                               <------ ------>ANAC58  <-----------TBP                                                          <---------ICU4 ------>ANAC58  *TSS--------->ZAT6      <---------TOE2(3)                     <-----------HVH21 -TBP     <-----------GT1               <---------TOE1(3)         <----------DOF2       <---------ATHB51   acgcacacatattaacatatttatactactagtatataagttaagggtttaagcctcttctcttccttctttctcttagccatcacatcgataatggctt  5359100                                                                           --------->ATHB12                                                       <----------DOF2    <---------MYB52(1)                                                    <---------ARR11(3)   <-----------TGA1                                         --------->DOF5.7(2)             <-----------HVH21                           ------>ZmHOX2a(1)        --------->ARR11(3)  --------->DEAR3(1) ---ANAC58           <---------MYB52(1)  <---------MYB52(1)          <---------ALFIN1<-----------GT1 ---ANAC58     <---------ALFIN1         --------->TOE2(3)          ----------->RAV1(1)     <---------GLK1(2)   ctcttctaacaaaacccaaacccgttttcctctgttcaccatcgttatctccaagaactttgaacacagcaacaccgtcattgaatttcaccagaatttc  5359200                                                                                              <------                                                                                              -------                                                                                              <------                                                                                           --------->At4g35610                                                                                           --------->ZAT2                                                                                           <---------At4g35610                                                                                          <----------                                                                                        <---------ZAT2                                                                                        --------->At4g35610                                                                                        --------->ZAT2                                                                                        ----------->RAV1(2)                                                                                        <---------At4g35610                <---------ANAC58                                                    <---------ALFIN1                <---------ANAC58    ------>ZmHOX2a(1)                               --------->AtMYB61            ---------->DOF2  --------->ANAC58                                    <-----------GT1    --------->ANAC46         --------->ANAC58               ---------->DOF2    <-----------HVH21  ---   --------->MYB46(3)        --------->ANAC46<-----------RAV1(1)              --------->bZIP60(1) ---  --------->ANAC46      <----------DOF2      <---------MYB46(3)               <---------bZIP60(1)<---   attcacccatcaccaaaagcttgctcctttcaagcctcctagtctcgttgttgcattctctgaaaagggtttgaagagagatgtcaccacagctgctgca  5359300                                                                      <---------MYB46(3)                                                                   <---------ANAC46                                                                   <---------ANAC58                                                                   <---------ANAC58                                                                   <------MYB83                                                >>>>>>>>>TBF1     --------->MYB55(2) <---------ANAC46                        <---------MYB46(3)       --------->MYB46(2) ---ZAT14                                <------MYB83             --------->MYB111(1) -->At4g35610                           <---------AtMYB61         --------->MYB111(2) ---At4g35610                 <---------At4g35610                 <---------AtMYB61             <---- -RAV1(1)     <---------HSFB2a(2)    <-----------RAV1(1)          <---------MYB46(3)          ------- ------>DEAR3(1)        <---------TOE2(3)<------MYB46(1)  --------->DAG2              --------->ANAC58 -------->HVH21     <------ZmHOX2a(1)--------->ALFIN1    ---------->DOF2              --------->ANAC58 ------At4g35610    --------->YAB1 <---------ANAC46  <----------ID1<------MYB46(1)  ---------->DOF2   gcgacggagggagattacagaaggataatgttatctgatgtgttggtgaagaagaaggaaaaagtagtttggtgggagagagaatggaaagctatggact  5359400                                                                                  <----------DOF2                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                                 <---------ANAC46    <-----------RAV1(1)                                                       <--------P    <---------MYB46(3)                                                        <---------MYB52(1)  --------->At4g35610           <---------ANAC58                             <-------GAMYB  <---------At4g35610           <---------ANAC58                            <---------MYB46(3) ------DOF2    <---------MYB52(1)              <------NtERF2        <---------At4g35610 >TEIL  <---------At4g35610------->TEIL<----------DOF2              --------->At4g35610   <----------DOF2   ttggagctgttgctgtcgttttgtctatgcatttgcttagtcttttggctccgtttcaattcaattggagagctgtttcggttgcttttgggctttatat  5359500  Previous    Next  AGI:  At3g15840.1    Description:  PIFI (POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE). similar to chloroplast post-illumination chlorophyll fluorescence increase protein [Nicotiana tabacum] (GB:ABI51594.1) Range:  from: 5356645    to: 5358507    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g15850.1    Description:  FAD5 (FATTY ACID DESATURASE 5); oxidoreductase. Identical to Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplast precursor (ADS3) [Arabidopsis Thaliana] (GB:Q949X0;GB:Q8LCQ8;GB:Q9LVZ4); similar to ADS1 (DELTA 9 DESATURASE 1), oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G06080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62719.1); contains InterPro domain Fatty acid desaturase, type 1, core (InterPro:IPR015876); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase, type 1, C-terminal; (InterPro:IPR001522); contains InterPro domain F Range:  from: 5359016    to: 5361192    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version