Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ------->TEIL                    --------->MYB52(1)                 --------->ANAC46                 --------->ANAC58                --------->MYB52(2)                     --------->GLK1(2)        --------->AHL20(2)                   <---------YAB1                            <---------GLK1(2)        <---------AHL20(2)                 <---------GLK1(1)       --------->GLK1(1)   --------->ARR11(3)   <---------YAB1--------->ANAC58         <---------ARR14(2)       <---------GLK1(1)   --------->ARR14(2) ------DOF2  <-----------GT1              --------->ARR14(2)   <---------ATHB12        <---------ARR14(2)   ttattgtgattttatttacaagaaacgaatttagaattttagtggatatgtttgtttcaatgccaatggatatcgccatattggtataagattctccatt  5339700                                                                                    <-----------GT1                                                                                  <-----------GT1                                                                              <---------ICU4                                                                        --------->YAB1                                          ----------->RAV1(1)       <------ZmHOX2a(2)               -                     --------->YAB1      --------->ANAC46          --------->ARR11(3)               -                    <---------YAB1     <-----------GT1    --------->GLK1(2)  --------->ICU4        --                  --------->YAB1  --------->TOE2(3)XXXXXXXXXXXXXXXXXXXX>MIR1887  <-----------GT1 <---      --------->AHL20(2)    ----------->GT1       ---------->DOF2  <---------ARR11(3)    <---------MYB52(1)   acaaaaaaaaaaatacactagtataatagcatgtaacatttatacaacataacaaagtagaatctacaagatcaacataatttttatcacccttgggttt  5339800                                                                                                 ----                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                                                                         --------->ARR11(3)                                                                                         <---------AGP1                                                                                         <---------ARR11(3)                                                                                         <---------ARR14(2)                                                                      --------->ATHB51   --------->ARR14(2)                                                                      <---------ICU4    <------ZmHOX2a(1)                                                                     <---------ATHB51  <---------HSFC1(2)                                                                 <-----------------AGL1--------->HSFC1(2)                                                         --------->ATHB51           <------ZmHOX2a(1) -------->TOE2(2)                                    <-------TEIL----------------->AGL3--------->HSFB2a(1) -------->TOE1(2)      --------->ANAC46             <-----------GT1  <---------ATHB12  <---------HSFB2a(1) ------->MYB46(3)<----------DOF2         --------->YAB1 <---------YAB1--------->YAB1==============HOX2a_HOX2a --------GT1  <-----------GT1     <-----------GT1<---------KAN4(2)   --------->ICU4 =============HOX2a_HOX2a   aacctccgattagttttttctttataagaaacaaattaacctataagaacgaatatacattattgtcttcaattatggcaaaacgaggaaggatctaaaa  5339900                                                                                      <---------ALFIN1                                                                                     <---------ZAT18                                                                                     <---------ZAT14                                                                                     --------->ZAT14                                                                                 --------->ZAT6                                                 --------->ZAT14                 --------->AtMYB61                                                 <---------ZAT14             --------->ANAC58                                            <--------P                       --------->ANAC46                                         <---------TOE1(3)                   --------->ANAC58            ---------->DOF2     --------->DAG2  <---------REM1(1)          --------->ANAC46       ---  ------>MYB83            ----------->GT1<---------TOE2(3)                 <---------ALFIN1       <--  ------>MYB46(1)    ---------->DOF2     --------->DAG2   ---------->DOF2<---------ALFIN1     <------ ----->MYB52(1)  <----------ID1---------->DOF2  --------->ALFIN1    <-----------GT1--------->ANAC46   aaccgaacacagtcgaaaggagccaaagcagtcaaaagtggataaggtaagtgtagggtccaaagccttataactccacacgaccactacactctctaca  5340000                                                                                          --------->ANAC58                                                                                      --------->CCA1(2)                                                                                     --------->ARR14(2)                                    <---------ZAT18                                  <---------ARR14(2)                                 --------->ETT(1)                                  --------->LBD16                                 <---------ANAC46                                 <---------HSFB2a(2)                                --------->ALFIN1                                  --------->HSFB2a(2)                                --------->ATERF1(1)                          --------->HSFC1(2)                               <-----------HVH21                             <---------HSFB2a(1)                              --------->TCP20                                --------->HSFB2a(1)         <------NtERF2        <---------ANAC46                               <---------HSFC1(2)       <---------DEAR3(1)     <---------PCF2                                --------->ARR14(2)  <---------ANAC58         --------->ALFIN1                               --------->LBD16 --------->ANAC55(1)  <---------ANAC58       <---------ANAC58                                --------->ANAC46 --------->ANAC46 ---->MYC3               <---------ANAC58     <----------DOF2         --------->GLK1(2)<-------TEIL - -----MYC3             <XXXXXXXXXXXXXXXXXXXXMIR160A-C                 --------->ARR14(2)  --------->AtLEC2 ---REM1(2)          <----------DOF2--------->ZAT18                   <---------ARR14(2)  --------->ANAC58   catggctcgtcgtcgttttggggctatacgtggggtcgggcacttcttctttcaagtttcttcgaaatgaagtatccgaaacttccagatacacgcaaaa  5340100                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                              <------                                                                                              <------                                                                                              <------                                                                                             <------MYB46(1)       ----------->GT1                                                         --------->YAB1<-------       <----------ID1           <-----------GT1                      --------->LBD16         <------MYB83     *TSS   ---------->DOF2  <----------DOF2               --------->YAB1  --------->ATHB12  <-------     ----------->GT1    <----------DOF2       <---------YAB1  <---------ICU4 <---------WOX13(1)<-----   ---------->DOF2    <------------------------ANAC81   --------------------->WRI1      <-----------RAV1(1) -------->LBD16      ----------------------->TaNAC69(2) <----------DOF2  <---------ATHB12   <--------   cccagaaaagagaaaaaagaaatcgtctttccttttacttctcttcttccgattgggtctttgatcatttccccaatcgattgataagttttgttgggtt  5340200    <---------GLK1(2)                                        --------->ZAT14 ---------DOF2                                             <---------At4g35610 -------ANAC58                                             <-------GAMYB -------ANAC58                                             --------->At4g35610 ---ANAC58                                            --------->ANAC58 ---ANAC58                                            --------->ANAC58 -GAMYB                                             <--------P                     <---------TOE2(3) --ANAC58                 ---------->DOF2         ----------->GT1        <---------TOE1(3) --ANAC58            ------>ZmHOX2a(2)            <---------ANAC46       <---------TOE2(3)      <---- ---P              --------->ARR11(3)       --------->ANAC46<---------MYB52(1)     <---------TOE1(3) -MYB46(3)         <---------ARR11(3)     ----------------->AGL1     <----------DOF2      <---------YAB1   gctttcgattcttcgtttgatgatctaagaaagtctctgtctttccacgatggggtaagtcagttaactcgttttaaggttgtataaggtttttgattct  5340300                                                                       --------->CCA1(2)                                                                      <---------ARR11(3) <---------ANAC46     ----------->RAV1(2)                         ---------->DOF2      <---------KAN4(2) ----------->GT1   <---------AHL20(2)                          --------->YAB1 <----------DOF2       - -------RAV1(1)<----------DOF2                       <----------DOF2  --------->ARR11(1)     <-------   gtggcgaaaaatgttatctttttaatctgggccattggaattcgaaagtttttagctttgggtattcataaagatttgagctttgaaggaataagctttt  5340400                                                                        --------->ARR11(3)                                                                       --------->ATHB12                                                                       <---------ICU4                                                                      <---------ATHB12         <-----                                  <------MYB46(1)                     --------->ICU4           <-----      <------ZmHOX2a(1)           <------MYB83                        <---------YAB1 --------->ZAT14<      --------->YAB1         --------->ATHB12                        <---------TOE2(3)    <---------MYB46(3)    <---------TOE2(3)       <---------YAB1                 --------->YAB1            <---------ZAT14< -------->CCA1(2)           --------->ICU4               <---------WOX13(1)        --------->ANAC46 < ---DOF2                  --------->YAB1         --------->ANAC46  <---------AHL20(2)--------->At4g35610   ggatataaggatgatgtttttgtttggatgatgatttggtttagctattacacaaaatgaatgatatgtttaatgattttgtaacacagcagtagttgtt  5340500        --------->YAB1       <---------YAB1 ----ANAC58 ----ANAC58                    --------->ALFIN1<---------AtLEC2 ---------ANAC46   --------->ANAC58        <----------DOF2                                  <-------- ---------ANAC58   --------->ANAC58     ------->TEIL                               <---------ANAC46 ---------ANAC58 ---------->DOF2  ----------->ARR10     ---------->DOF2      --------->ATHB12 <------ZmHOX2a(1)   tggcttgttttgataagtcgaaagcaaaaacaagtgtagatgtgcctttgaatggcacaaaagatgtgttagtagaagaagattggagtgaattgaggaa  5340600  Previous    Next  AGI:  At3g15770.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25360.1); similar to unknown [Populus trichocarpa] (GB:ABK94402.1) Range:  from: 5340105    to: 5341346    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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