Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------At4g35610                            --------->ANAC58                   --------->At4g35610                            --------->ANAC58                   --------->ZAT2                              --------->ZAT18                   <---------ZAT2                              <---------SPL7         --------->ALFIN1                                      <---------ZAT18   <----------DOF2      <---------DEAR3(1)                                     --------->PCF2      ====================     <---------ORA47(1)                                      <---------ZAT18--------->ARR11(3)  <---------WOX13(1)                                     --------->ALFIN1   <---------ARR11(3) --------YAB1 <---------ARR14(2)                        <-----------HVH21  <---------GLK1(1) ----ANAC58   --------->ARR14(2)   <---------ANAC58  --------->ARR14(2)    <---------CCA1(2) ----ANAC58  <------ZmHOX2a(1)     <---------ANAC58  <---------ARR14(2)    --------->GLK1(1)   tgtgatggacggtgaggattcagcttgggaaacgatgtcgtaacgtttggatgcagaacgtcgggcgcacgatttggatatctcttttttttttttgtct  5329900          <-----------HVH21         ================================bZIP_DOF         --------->ANAC58         --------->TGA1a                                 --------->DDF1                --------->WOX13(1)         --------->ANAC58                                --------->RAP2.6(3)     <---------ARR14(3)      ------>ZmHOX2a(1)                                <-----------RAV1(1)       --------->ARR14(3)     --------->TOE2(3)  <-----------GT1    <-----------GT1  <------NtERF2        <---------GLK1(2)---  <---------ARR14(2)--------->AHL20(2)  <---------AHL20(2)<---------DREB2C(2)    --------->ARR11(3)  --------->ARR14(2)<---------AHL20(2)  --------->AHL20(2)<---------RAP2.6(2)    <---------ARR11(3) ==================bZIP_DOF   <----------DOF2  <----------DOF2                   --------->ARR14(2)   cccctatcctcaagtcagggattttattacaactttgaatatttatttcctttttttatgtcggccttcttaaaacttttcaagattttcaattagtcac  5330000                                                         <-----------GT1                                                      <---------ICU4                            <----                                                     <---------AHL20(1)                        ------                                                     --------->AHL20(2)                  --------->TOE2(3)                                                --------->TOE2(3)                        ------->GAMYB                                               --------->ANAC55(2)                       --------->YAB1                                <---------AHL20(2)   <---------AHL20(2)                 <---------MYB55(2)                    <-----------GT1            <---------ANAC46                         --------->MYB46(3)            <-----------GT1  <---------AHL20(2)<---------ANAC55(2)<------ZmHOX2a(1)    ------>MYB83           <-----------GT1  --------->AHL20(2) ----------->GT1 --------->YAB1          -------->P          <---------AHL20(2)--------->YAB1<---------REM1(1)<---------YAB1              ------>MYB46(1) ------>ZAT14  <----------DOF2  --------->AHL20(2)   --------->AHL20(1)       --------->YAB1   ------   taaactttccattttatctttttcactctattatataattttagatgtaacgtaaaatattactattaggatgtgagataacataatccaaccacaatta  5330100                           --------->YAB1                          <---------AHL20(2)                          <---------YAB1        ----------->GT1--------->AHL20(2)  <---------MYB52(1)   <---------AHL20(1)  --------->DOF5.7(2)  --------->AHL20(1)        --------->GLK1(2)         <---------MYB59        --- --------->TOE2(3)     <---------ARR11(3)       <---------GLK1(2)--------------->AGL15           ---- -----AHL20(2)   <-----------GT1           ---------->DOF2      <-----------------AGL2         <----- --->AHL20(2) --------->TOE2(3)      --------->AHL20(2)       <-----------GT1                  ------ --->YAB1     --------->TOE1(3)      <---------AHL20(2)    ----------->GT1----------------->AGL1-----   tatcgttatctagtaacattaactatatattataagttataaattgaaaggaatctcttgagagtaactatttagggcctaattgtgaaactaaaaacgt  5330200                                                                                     --------->ANAC58                                                                                     --------->ANAC46                                                      ------>ZmHOX2a(2)              --------->ANAC58                                   --------->ICU4    --------->CCA1(2)             <---------ALFIN1                                   <---------YAB1    <------ZmHOX2a(2)            <---------REM1(2)                              <------MYB46(1)       --------->AGP1            --------->TCP16(1)                              <------MYB83          <---------ARR14(2)        --------->PCF5                           <---------MYB52(1)       <---------ARR11(3)        <---------PCF2                         --------->MYB52(2)         --------->ARR14(2)        --------->PCF2                        <---------TOE1(2)           --------->ARR11(3)        <---------TCP20  <-----                        --------->SPL7        <---------YAB1               --------->ALFIN1    ------                        <---------TOE2(2)   --------->YAB1              --------->DAG2         ------ ------>ALFIN1        <---------SPL7       <---------ATHB12            ---------->DOF2   ------------ ----->REM1(2)       <---------ANAC58   <---------AHL20(2)       --------->YAB1 <------NtERF2 ------- --MYC3              <---------ANAC58  --------->AHL20(2)        <---------ICU4--------->TCP23<------ ->MYC3       <-----------GT1<---------MYB46(3)     <---------AGP1 <---------YAB1<---------ALFIN1   < ---->ALFIN1  --------->YAB1 --------->MYB55(2) ---------->DOF2 --------->ICU4<---------TCP15(1)    -   gtagggctgaaactaataacaattcgtacgttgggtcactattaaatcatcaaagatctgtagaaaataatgaaaaagtggccccacacgctccaattaa  5330300                                                    --------->LBD16          --------->ATHB12                                                   --------->HSFB2a(2)     --------->SPL7                                                  ------>ZmHOX2a(2)       ------>MYB46(1)       <---------ARR14(2)                       --------->ARR14(2)        ------>MYB83             --       --------->ARR14(2)                       <---------ARR14(3)      --------->MYB46(3)        <--      <---------At4g35610                       --------->ARR14(3)      --------->DEAR3(1)        ---      <---------ZAT2                            --------->ARR11(3)      <---------MYB46(2)       <---      --------->At4g35610                       <---------ARR11(3)      <---------MYB52(2)       <---   --------->At4g35610                  --------->ANAC58                <---------MYB55(2)       <---   <---------At4g35610                  --------->ANAC58               --------->ANAC46          <--- ----AHL20(2)                           --------->ANAC46         ----------->HVH21               ---- --->AHL20(2)                           <---------ANAC55(2)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-- --->AHL20(1)                          <---------LBD16         --------->At4g35610               ---- >CBF --------->ZAT2          --------->At4g35610<------ZmHOX2a(2)    --------->MYB52(1)         ---- -->AHL20(2)                 <---------ARR11(3) --------->AGP1 <---------At4g35610              ----- ---AHL20(2) ---------->DOF2 --------->ARR11(3) <---------ARR14(2)  --------->MYB46(3)          <---- ---------At5g28300          *TSS   <-----------HVH21  --------->ARR14(2) --------->MYB52(1) <------ZmHOX2a(2) --------->DOF2          ---------->DOF2--------->ANAC55(2) <<<<<<<<<TBF1<---------SPL7     <--------   attacagcagctccacaaagtagctcttaaagagcttccatcacggaccagatcccgaattcttcttctgaccaccgaacgattgagtttctccgatcag  5330400        --------->HSFB2a(2)        <---------HSFB2a(2)       <---------ANAC46       <---------LBD16     --------->GLK1(2) ---->ZmHOX2a(2) ----ZmHOX2a(2) ------>GLK1(1) --------ARR10 ------AGP1 ------ARR14(2) ------ARR11(3) ----->ARR14(2) -------GLK1(1) ----->ARR11(3) ----->AGP1                                                              <---------YAB1 ---->At4g35610<--------ATHB1                                        <----------DOF2 <---------ANAC58 -----CCA1(2) --------->ICU4                                      <-----------GT1<----------DOF2 ---HVH21--------->LBD16                            ------->TEIL<---------AHL20(2)   <---------ANAC58   atctcagtttctgggaataattcgaagttagtatttctctacttcatctctatgaatctcattcattttatctttatgtttctctttacttgttttgcga  5330500                                                                                                <----                                                                                           ==========                                                           <---------DAG2                  ------>ZmHOX2a(2)                                                           <----------DOF2                <------ZmHOX2a(2)                                  <---------ANAC46      ------>NtERF2 ---------->ID1      ===========                           <----------DOF2             --------->WRKY12                  <---------ARR14(2)                      <---------MYB46(3)               ----------->HVH21                ------->GAMYB                     --------->ALFIN1                --------->At4g35610<----------DOF2--------->MYB46(3)                  <---------TOE2(3)              <---------GLK1(1)   <-----------GT1 --------->MYB52(1)   ttaaaactcgtttgatcatttaggtggttctttgttttgtgagataagtggaactcgctgacttttttttttttctttttggataatcaacgatcgggtt  5330600                                                 --------->MYB59                                   <----------DOF2                 <---------ZAT6   ------>ZmHOX2a(2)            ============================HOX2a_HOX2a            ------>ZmHOX2a(1)    <------ZmHOX2a(2)                                     <---------ANAC46 ---TEIL    =============================HOX2a_HOX2a                <-----------GT1    <---------ANAC58 ==================HOX2a_HOX2a  <---------ARR11(3)          <----------DOF2            <---------ANAC58 ==================HOX2a_HOX2a  --------->ARR11(3)  <------ZmHOX2a(2)             <---------ZAT6  <--   catttgctattgtcctctagtgttacactgatacgatctttagttttgagttagatcagtgactttagtttcactattcaactagtgttccttgttttta  5330700                                                           --------->ARR14(2)                                                           <---------ARR11(3)                                                      <---------ANAC46                                                     <-------TEIL                                             <----------DOF2                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                          --------->ARR14(3)                                          <---------ARR11(3)                                          <---------ARR14(3)      <---------DAG2                                          --------->ARR11(3)      <----------DOF2                                          <---------AGP1   <---------AGP1                                          <---------ARR14(2) ------>ZmHOX2a(2)                                          --------->ARR14(2)<------ZmHOX2a(2)                                    <-----------GT1 --------->GLK1(2)   <XXXXXXXXXXXXXXXXXXXXXMIR855                     --------->At4g35610  --------->AGP1   <---------ARR14(2)     --------->TOE1(2)           <---------YAB1    <---------GLK1(2)   <----------DOF2  <---------ZAT14 --------->At4g35610    <---------CCA1(2)<---------CCA1(2) ----ZmHOX2a(1)   <---------At4g35610    <---------ARR14(1)--------->ARR11(3)                    <---   ggacaatactgcgaaaatttagctgctctaaaattttgataccagatctttgagattcgtagatctcgcttttctttttttttagttttttcagaaacta  5330800  Previous    Next  AGI:  At3g15730.1    Description:  PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1); phospholipase D. Identical to Phospholipase D alpha 1 (PLDALPHA1) [Arabidopsis Thaliana] (GB:Q38882;GB:Q944M4;GB:Q9LW06); similar to PLDALPHA3 (PHOSPHLIPASE D ALPHA 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT5G25370.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to PLDALPHA2 (PHOSPHLIPASE D ALPHA 2), phospholipase D [Arabidopsis thaliana] (TAIR:AT1G52570.1); similar to Phospholipase D alpha 1 precursor (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (GB:O82549); similar to Phospholipase D alph Range:  from: 5330329    to: 5333752    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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