Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------ANAC58                                   <---------AHL20(1)     <---------ANAC58        <-----------GT1 <---------ANAC55(2)             ----------->GT1    --------->ZAT2       <---------AHL20(2)  --------->ANAC55(2)            --------->ANAC46    <---------ZAT2       --------->AHL20(2)  <---------ANAC58       --------->YAB1    --------->At4g35610 --------->AHL20(2)   <---------ANAC58       --------->AHL20(2)  ------->GAMYB         <---------AHL20(2) <---------AHL20(2)     --------->ICU4 --------->MYB46(3)  --------->WOX13(1)    <-----------GT1        <---------YAB1 ------->P<---------MYB59--------->AHL20(1)--------->AHL20(2) <-----------TGA1 ----->ABI4(2) --------->ARR11(3)       <---------ICU4  --------->AHL20(1)  --------->ANAC58 -------- --DEAR3(1)    <---------ARR11(3)    ----------->GT1    <---------ARR11(3)  --------->ANAC58---------   gcaaccagcttgcctaacatcttcaattaaattacaaactagtaattacttacttcaaaatattcgtcattaatatccaaggaaaaaaaaaacaggggaa  5327100                                                                                     --------->ANAC58                                                                                     <----------ID1                                                                                     --------->ANAC58                                                                                    --------->SPL7                                                                                   --------->ARR14(2)                                                                                  <------NtERF2                                                                                 --------->LBD16                                                                                 <---------RAP2.6(3)                                     <---------ARR11(3)                         --------->RAP2.6(2)                                   --------->ANAC58                             --------->ATERF1(2)                                   --------->ANAC58                             <---------ATERF1(2)                                 <---------AtLEC2                               --------->HSFB2a(2)                            --------->ARR14(2)                 --------->TOE2(3)<---------HSFB2a(2)                            <---------ARR14(2)            --------->At5g28300  <---------LBD16                       <---------ANAC46                  ----------->GT1      ------>NtERF2 --->GT1--------->TOE1(3)--------->ALFIN1         <-----------RAV1(2)         --------->MYB52(1) -->GT1----------->RAV1(2)----------->ARR10     <-----------HVH21    <-----------HVH21    --------->MYB52(1)   aaacagagtacctgaacaaaaacaggggtggatttgcaagacccttgaaacttcaggggctgtaacataaatgtcatccctgccggaacgacaaactgcc  5327200                    <---------ZAT2                    <---------At4g35610                    --------->At4g35610                    --------->ZAT2                --------->ANAC46              <---------ALFIN1             <---------REM1(2)             --------->ZAT14          <---------At4g35610              <---------DAG2     --------->LBD16                       <          --------->LBD16               --------->ANAC58     --------->HSFB2a(2)             <-------          --------->At4g35610  <----------DOF2         <---------AHL20(2)  --------->YAB1<----------DOF2      --------->ARR14(2)    --------->ANAC58     ---------->ID1 <------ZmHOX2a(1)        <---------DAG2    ------>ZmHOX2a(1)       --------->ANAC58<----------DOF2  <---------LBD16 <---------------AGL15 --  ----------->RAV1(2)<---------GLK1(2)  --------->ANAC58     <---------HSFB2a(2)     <------ZmHOX2a(1)   catctcctgttccgctacacacagcttcccaagctttcaagaacgccttttgtttttttaattccaggaaaaaactttgatattttaggaactttttcgg  5327300     <----------ID1                                                 ------->GAMYB <---------YAB1                             <---------ARR14(2)     --------->MYB46(3) ---------AHL20(2)                          --------->ARR14(2)    ------>MYB83 --LBD16                              --------->TOE2(2)           -------->P    ----------->GT1 ------->YAB1                      <-----------GT1                ------>MYB46(1)   attataatggacaaatgacaactacagaacttagtttttacctgtgaatcgtctgtaactccatctccaaccgctccgaattgagtaacatccaatgcat  5327400                                                                                       <---------ICU4                                                                                       --------->YAB1                   ---------->DOF2                                                   --------->ARR11(3)            --------->CCA1(2)                                                  ----------->GT1           <---------ARR11(3)                                              --------->DAG2           --------->ARR11(3)                                 <---------AHL20(2)  --------->AHL20(2)           --------->ARR14(2)                                <---------AHL20(1)--------->TOE2(3)   <-           <---------ARR14(2)                               <---------CCA1(2) ----------->GT1   -----         ----------->ARR10                            <<<<<<<<<TBF1       ---------->DOF2<---------YAB1   tcgaagatgtgaagatttgaagaaagaacagtgagaaattcaagaaccaagtcttcttcttcatatattttgaagaaaaagcgttaaaatcatgaatgaa  5327500                                                  --------->STY1(2)                                            <---------ZAT14                                            --------->ZAT14                                            <---------ZAT18                            ------->TEIL            ----------->GT1           <----------DOF2                                  <-------TEIL --------YAB1       <-----------RAV1(1)     --------->ZAT18   <-----------GT1  <-------TEIL   ------- -->TEIL  ---------->DOF2 <---------REM1(1) *TSS  <---------STY1(2)           --------->CCA1(2)   tatgtttacgactaaagaaaaaatgttgttgaagcgaaggctttactacactagctactatattatactacttacataagatacatatgtacatagaaaa  5327600                                        <---------PCF2                                       ----------->HVH21                                   ===================RAV                                   <-----------RAV1(1)                          <-----------GT1                               <---------GLK1(1)                             <---------KAN4(2)                          <---------LBD16 <-----------RAV1(2)             --------->ANAC46                          <---------At4g35610                             --------->ANAC58         --               <-----------GT1 <---------RVE1(1)                          --------->ANAC58         <-             <----------DOF2   --------->GLK1(1)                       <-------TEIL   <---------ARR11(3)             <---------DAG2   --------->ARR14(2)                      --------->CCA1(2)           ---      ---------->DOF2     --------->At4g35610                        <---------ARR14(2)       XXXXXXX --->DOF2 <------ZmHOX2a(1)   <---------ARR14(2)                     --------->ARR14(2) --------->TOE2(3)   gaagatgctaaaggactttaccatgttcagcggatatttgtgggacaggggaagacaatgtgaagaaaatggatacacgaatatacaatttcttaacaaa  5327700                                                            <---------PCF2            --------->DAG2                                  <---------YAB1            --------->ZAT18     --------->AHL20(2)       ----------->GT1          <-----------GT1           --------->ZAT18      --------->AHL20(2) <--    <---------REM1(1)        <---------ICU4               <---------ZAT18    --------->YAB1      ---- --------->ICU4              <---------AHL20(2)    <------NtERF2         --------->AHL20(2)    ------ ------->YAB1               --------->AHL20(2)    <-----------HVH21  <---------AHL20(2)     --------- --------ICU4               --------->ICU4       <---------ANAC58    --------->AHL20(2) <---------GLK1(2) ------>ICU4      <---------CCA1(2)    <---------ZAT18   --------->ALFIN1<---------AHL20(2) <-------- XXXXXXXXXXXXX>MIR849     <---------ICU4         <---------ANAC58    --------->ICU4 ---------->DOF2   ataatgatgtagtaactatcaaatctcatatttattaccagtgcccatgaggcgtcagagtgggcactgtattaattaaaaataaaaaaaggttctccta  5327800   <---------ANAC55(2)   --------->ANAC55(2)  <-------TEIL -------------AtSPL8               <---------AHL20(2) ------>DOF2                       --------->AHL20(2)                     <---------ARR11(3)    <---- >ZmHOX2a(1)                    <---------AHL20(2)                        --------->ARR11(3)   ------ ------>AGL15                  --------->AHL20(2)                      <---------TOE2(3)       ------ -------AGL15                --------->YAB1                           ---------->DOF2         <------   aaagtacgtagcattgtattatctgttacaatattaaataaatgtgtcttcatgttttttggttccattttttaaagatgttttttggttccatttccct  5327900                              --------->ARR14(2)                              <---------ARR11(3)                              --------->ARR11(3)                              <---------ARR14(2)                             --------->CCA1(1)    ----------->GT1          --------->At4g35610                       <-----------HVH21         <---------TOE2(2)         --------->ZAT2         --- -----MYB52(1)        ----------->GT1  <---------AHL20(2)             --------->YAB1              <-- --->TOE2(3)    --------->ANAC58       --------->AHL20(2)            <---------YAB1 --------->AHL20(2) --->TOE1(3)    --------->ANAC58       --------->YAB1    ---------->DOF2   <---------At4g35610 <----- ------------------ANAC81    --------->RVE1(1) --------->TOE2(2)----------->GT1   --------->TOE2(3)<-   taacttcgtttgattttcaaggaaatgtcaaatatctgcaattatataacataggtaaaaaaagagaggttataatcagctgtacattaaacacatagtg  5328000  Previous    Next  AGI:  At3g15720.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. Identical to Putative polygalacturonase At3g15720 precursor [Arabidopsis Thaliana] (GB:Q9LW07); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G27530.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABC75354.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pect Range:  from: 5325297    to: 5327544    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version