Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------ZAT14                                <---------ETT(2)           <-----------GT1       --------->ZAT6     -         --------->YAB1         --------->ETT(2)       <----------DOF2     --------->YAB1           - -------->DOF2         --------->GLK1(1)         <-----------GT1    <-----------HVH21               -   aaaaaccccattcataacatttcagatttctatgtctacagtaaaccaatttcacagcttttaaacacactgtcgaataagaaacactacattacctctt  5296200      ------->GAMYB                                                              ------>ZmHOX2a(2)     <---------MYB52(2)                                                         <------ZmHOX2a(2)     --------->MYB46(3)                        ------->GAMYB                   --------->AGP1  ------   --------->MYB52(1)                        -------->P                        <---------ARR14(2) <---------MYB52(2)                         --------->MYB52(1)                 --------->ARR14(2)   - --------->MYB46(3)                      --------->ANAC58                      --------->ARR11(3)  -- -------->ANAC58               <----------DOF2<------------AtMYB77             <---------ARR11(3)  -- -------->ANAC46          <-------TEIL   --------->ANAC46                     <---------GLK1(1)------ -------->ANAC58     <-----------RAV1(2) --------->ANAC58       <-----------RAV1(2)            ------   gcaagcaacgaactagtacttcgccaggttcacctttaaaaacaagcaaccgtgaaccaagtttcttcaggctagaatcgagatccttgagactctcaag  5296300         <---------LBD16         ------>ZmHOX2a(2)       ------->TEIL        <------ZmHOX2a(2)        --------->MYB52(1)       --------->ARR14(2)       --------->ARR14(2)       <---------ARR14(2)<------NtERF2     --------->LBD16    ------>NtERF2   <---------LBD16     <---------ANAC46          --------->At4g35610  --------->MYB52(1)  <------NtERF2              <---------ZAT2 --------->ARR14(2)  --------->LBD16             <---------At4g35610 <---------ARR14(2)  <---------ATERF1(1)         --------->ZAT2                                 <---- --->ANAC46          ------>NtERF2             <-----------RAV1(2)       --------->LBD16       <----- -------->MYB46(3)  --------->ANAC46         --------->ANAC58           <---------ANAC58     -------- ------->ANAC58     <---------DEAR3(1)       --------->ANAC58           <---------ANAC58     <------- ------->ANAC58    <---------LBD16  --------->LBD16                    <---------LBD16     --------->LBD16 --->ANAC58     <---------At5g28300<---------LBD16                --------->AHL20(2)     <---------LBD16 --->ANAC58--------->LBD16      <---------ARR14(2)       ----------->HVH21              --------->MYB52(1)   caagaaccggatccggtttaccccggcgcgagacgaaccgggagagaacgcagatgggtctgactccatataatgcgggtcgataacaaaaaccggatac  5296400                                                                    ------>MYB46(1)                                                               <---------ARR14(2)                                                             --------->LBD16                                                            --------->HSFB2a(2)     ------>ZmHOX2a(2)                                                     --------->ARR11(3)            <------ZmHOX2a(2)                                             ------->TEIL   --------->ANAC46  <---------LBD16                      <---------ARR14(2)<---------ANAC46    <---------HSFB2a(2)   <---------ARR14(2)                      --------->ARR14(2)<---------ANAC58    --------->ANAC55(2)   --------->ARR14(2)                   <---------ANAC58     <---------ANAC58   <---------LBD16   ------->TEIL          <---------DAG2         --------->LBD16     <---------ARR11(3)    --------->ZAT14 -----ANAC55(2)    <---------ANAC58  <---------MYB46(3) <----------DOF2    <---------ZAT14 --TEIL<---------GLK1(2)        <---------ANAC46    --------->GLK1(1) <---------ATHB12 ->ARR14(2)        <---------ANAC46 <--------P   --------->LBD16    ------>MYB83--------->LBD16  <--- --ARR14(2)<----------DOF2     <---------LBD16 <---------LBD16 --------->ARR14(2)<---------ARR14(1)   ataaattcagaaccttttgaggcgtattcaagagccgggttgtcgtgaacccggagacctttccggaaccaaatcagtgaaccggatccagtagccattg  5296500                                                 <---------ANAC58                                                 <---------AtLEC2                                                 <---------ANAC46                                                 <---------ANAC58                                          --------->GLK1(2)                                         <---------ARR14(2)                                         --------->ARR14(2)                  <---------HSFB2a(1)                                         <---------GLK1(2)                   <---------HSFC1(2)     <                                    --------->ANAC58                         --------->HSFB2a(1)   *TSS                                    --------->ANAC58           <---------TOE2(3)  <----------DOF2 <--                                --------->DEAR3(2)       <---------YAB1      --------->HSFC1(2)  ---- ------TOE2(3)                  --------->MYB46(3)    ------->TEIL--------->GLK1(1)             -----   atgttatgggattgagacgataacttgaaggtgaacagacgcagaatcgttgcatgaatatgtttgagatttctatagaagtttcttttgagaaattcgc  5296600                                                  --------->ANAC46                         --------->At4g35610                                                <-----------GT1                     --------->At5g28300                                               <---------ARR14(2)                --------->ZAT18                                               --------->ARR14(2)                --------->LBD16      --------->DAG2                       >>>>>>>>>GT-1                         <---------LBD16     ---------->DOF2                     <-------GAMYB                           <---------ZAT18 ----------DOF2                     --------->ARR11(3)                          <---------ANAC58 ----NtERF2                   XXXXXXXXXXXXXXXXXXXX>MIR774B                      <---------ANAC46 -->NtERF2         --------->HSFB2a(1)  ----------->GT1                         <---------ANAC58 ---->ANAC46       <---------HSFB2a(1)  <---------MYB46(3)                     <---------LBD16     --   gcctttgaaaagcgcgagagaaggtttcttaagacgaagatgtggttaatatacgcttcttcaactctgtgtttgctaatttgcgcggtaatcagcgtaa  5296700                                            <-----------TGA1                                            <-----------HVH21                                           <---------TGA1a                                           <---------O2                                           --------->bZIP60(2)                                           <---------bZIP60(1)                                           --------->bZIP60(1)                                           --------->TGA1a                                           --------->O2                                           --------->ANAC46                            --------->At5g28300                           ----------->GT1 --------->ANAC58                        --------->MYB52(1) --------->ANAC58                 <---------ANAC46                      <---------YAB1       --------->ANAC55(2)          <---------------------WRI1                    --------->YAB1         <---------ANAC55(2)   --------->ATHB12              ----------->GT1   <---------YAB1  --------->ICU4--------->REM1(1) ---------->DOF2   --------->ICU4         <-----------STF1  ----------->RAV1(1)      <---------ATHB12 ------->CCA1(2)   <---------YAB1     --------->ANAC46  <------ZmHOX2a(1)<---------DEAR3(1)----------   gataaaagaagggaataggttattatcaacggttatatttaggccacgtcattactaaggagcaacatcatttgggcgatgtgttcaattatccaacatt  5296800                                                                        <---------YAB1                                                                       <---------AHL20(2)                                                                       <---------AHL20(1)                                                                      --------->AHL20(2)                 --------->ATHB12                                     <---------AHL20(2)                <---------YAB1                                  --------->YAB1      <---------YAB1                                            ----------->GT1   --------->ICU4<---------ICU4                <---------AHL20(1)     --------->YAB1                <  <---------ANAC58   ----------->GT1          <---------CCA1(2)<---------ATHB12                <-----  <---------ANAC58 <---------YAB1      <-----------GT1<---------TOE2(3)--------->AHL20(1) <---------AHL20(2) ->RAV1(1)      --------->ICU4 <---------TOE2(3)<---------AHL20(2)   --------->ICU4       --------->AHL20(2)   tagtgcttattagtatccatgattagtgaaattaagaaaatttacttcatatatttgagattgcaatcgtaattatatttgtatactaacattttaatct  5296900              --------->ARR11(3)              <---------ARR11(3)              <-----------ARR10              --------->ARR14(2)              <---------ARR14(2)  <---------ANAC58        ----------->RAV1(1)  --------->ANAC55(2)  =================================HOX2a_HOX2a       ----------->HVH21  <---------ANAC55(2)  <------ZmHOX2a(2)                                  ------->GAMYB---------->DOF2  <---------ANAC55(1) --------->ARR14(2)        ----------->GT1          <---------MYB52(2)  <---------ANAC58    <---------ARR14(2)       <---------TOE2(3)        --------->At4g35610       --- -----------GT1  <-----------GT1         --------->MYB46(3) ---------->DOF2         --------->AHL20(2) ----ICU4    <---------CCA1(2) <---------MYB52(1)<------ZmHOX2a(1)    --------->MYB46(3)--------->DAG2   ttatacgtgttgaacatatctaccgatccaacagttagcattaacaactgaggaaaaaaaaaaaaagcattaacaactgacaacaaataaaaagctaaac  5297000                                                                               --------->DAG2                                                                              ---------->DOF2                                                                       --------->LBD16                                                                       ------>NtERF2                                                                       <------NtERF2                                                                      --------->DEAR3(1)                                                                     <------NtERF2                                                    --------->SPL7   --------->ATERF1(1)                                                  <---------SPL7     --------->RAP2.3(1)                         --------->ANAC58     ------------------>SPL14--------->RAP2.3(2)                  --------------->AGL15   <------ZmHOX2a(2)         <---------RAP2.3(1)          --------->MYB52(1)  --------->REM1(1)  ----------->GT1    ------>NtERF2        ------>ZmHOX2a(2)--------->ANAC58--------->ARR14(2)         <---------ATERF1(1)        --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------DEAR3(1)           -----     -------->HAHB4     --------->DAG2   <---------ARR14(2)        --------->ANAC46  <---------ARR14(2)    <---------ATHB12   ---------->DOF2 --------->ANAC46            --------->DEAR3(1)--------->ARR14(2) ------>MYB52(1)<-------TEIL----------->RAV1(1) --------------->AtSPL3--------->RAP2.6(2)      <-----   taactaatgatccaacggttcacaataaagcaacatcatacacgatccagaccgtacaaacagaaaacgacgccgcacaataaagcggttcttgagtatc  5297100  Previous    Next  AGI:  At3g15620.1    Description:  UVR3 (UV REPAIR DEFECTIVE 4). similar to CRY2 (CRYPTOCHROME 2) [Arabidopsis thaliana] (TAIR:AT1G04400.2); similar to CRY2 (CRYPTOCHROME 2) [Arabidopsis thaliana] (TAIR:AT1G04400.1); similar to hypothetical protein OsI_006166 [Oryza sativa (indica cultivar-group)] (GB:EAY84933.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46042.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80978.1); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050); contains InterPro domain DNA photolyase, FAD-binding/Cryptochrome, C-terminal; (InterPro:IPR005101); contains InterPro domain Rossmann-like alpha/beta/alpha sa Range:  from: 5293313    to: 5296599    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g15630.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46032.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71657.1) Range:  from: 5296854    to: 5297606    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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