Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ARR14(2)                                 <---------ARR11(1)                                 ------->TEIL                                 --------->GLK1(2)                                 --------->ARR14(2)                                <---------ARR14(1)                          <---------ANAC58                               <---------ANAC58         ---                          <------MYB46(1)                                <---------ANAC46  <---------ANAC58                          <---------ANAC58                               <---------ANAC58  <---------ANAC58 ---YAB1                  <------MYB83                           <-----------GT1   <-----------GT1--- >GT1            ----------->GT1<---------CCA1(2)           --------->YAB1      ----------->GT1   ---   ttgtcaatttcaaaataagaggtttatttggtgcgaatctcaaacgtccaaaatgtttgaaatcatataaccatgggttgtattgtaactatagcttacc  5286900                                                 <---------YAB1                                               --------->YAB1     --------->YAB1     --------------->AtSPL8<------ZmHOX2a(2)    <---------ATHB12    <---------------AtSPL8<---------ATHB12             <-----------GT1    <------ --->MYB83             <---------ANAC46  ------->GAMYB                --------->ARR11(3)   <---------ARR11(3) ------>AtLEC2   <---------AHL20(2)     --------->MYB46(3)          --------->ICU4         --------->ARR11(3) --->MYB46(1)    --------->AHL20(2)   ----------->RAV1(1)     --------->YAB1   --------->ICU4------>ZmHOX2a(2)   atccaaatcataaaaacaataaatgatgtgtacatttttccaacagcgatcatgcttatttctatgaaaaatgattttgacattatttgaattgatcttt  5287000                                                                       --------->ANAC55(2)                                                                  --------->ATHB12                                                                  <---------ICU4                                                                 <---------YAB1                                                       <---------ICU4  <---------ANAC55(1)                                                       --------->YAB1  <---------ANAC58                                                   --------->AHL20(2)  <---------ANAC58                                          --------->AHL20(2)  <---------AHL20(2)     --------->AHL20(2)               <---------AHL20(2)    ------->TEIL             --------->YAB1    <---------AHL20(2)                --------->AHL20(2) <---------YAB1<---------ANAC55(2)   --------    --------->AHL20(2)            --------->AHL20(2)  --------->ICU4 <---------TGA2(2) <---------YAB1 ----DOF2---------->DOF2        --------->AHL20(2)<---------ATHB12--------->YAB1  --------->YAB1<----   atacaaataaataaagttttctactagtttaaaaaaaaatataaataaacaaatgaattatgaatttatgattacgtctctctataatcatatttgttct  5287100                                                                  --------->At4g35610     --------->ATHB12                            <---------At4g35610     -------->ATHB1                              --------->ZAT2   <---------At4g35610     <---------ICU4                              --------->At4g35610     --------->YAB1                              <---------ZAT2<---------At5g28300    <---------YAB1                    ------>ZmHOX2a(2)    <---------ICU4                      ------    <---------ATHB12                  ========================HOX2a_HOX2a                    <-------    --------->ICU4                   --------->At4g35610  --------->ICU4                     -------- <---------AHL20(2)                 <---------ARR11(3) ------>ZmHOX2a(1)--------->At5g28300  -------- -->ID1   ---------->DOF2           --------->ARR11(3)<---------MYB59  ----------->GT1    --------->WRKY18(1) ------DOF2             <---------LBD16     ----------->HVH21 <-----------GT1            <-----------HVH21   tttttaatcattgaaagctaaacttatggggaatgaatgatctgaaatgacagcttcctaatttttacagctacggtaatatagggtaatgggtcaagta  5287200                                      =======================bZIP_DOF                                 <-------TEIL                                --------->ALFIN1                              <---------ANAC58                              --------->TGA1a                              <---------TGA1a      --------->O2                   ==========================================bZIP_DOF                   =====================bZIP_DOF   --------->TGA1a    <---------ANAC46          ===================bZIP_DOF    ----------->GT1    <---------ANAC55(2)       <---------ANAC58     --------->ANAC58    <---------ANAC58 ----------->GT1  ---------->DOF2   <---------YAB1                  <---------AHL20(2)    <---------ANAC58--------->DAG2 <-----------HVH21    --------->ICU4               ----------->GT1    --------->ANAC55(2)  ---------->DOF2           --------->ANAC58             <---------At5g28300    <---------ANAC55(1)  ===============bZIP_DOF   <---------TGA1a             <-----------GT1  <-----------GT1  ---------->DOF2<---------ANAC58 <---------O2             <---------ICU4  <-------- --->AHL20(2)   --------->AHL20(2)<---------ANAC58 <---------bZIP60(1)     --------------->AGL15 --ANAC55(2)--------->ICU4   <-----------------------TaNAC69(2)            <---------------AGL15 ->ANAC58 ---------->DOF2====================================bZIP_DOF     =========================== ->ANAC58 ==============================bZIP_DOF   --------->bZIP60(2)    ----------------->AGL3   aatgtaacgtgttaaagattaaaaagtaaaagacgtgcgtcaaagaaacagagacgtcaagattagtttaaaacttactaattacagtagttaattcgga  5287300               --------->HSFB2a(1)               <---------HSFC1(2)               --------->HSFC1(2)                          <---------DAG2               <---------HSFB2a(1)                         <----------DOF2           ----------->GT1                         --------->ANAC58           --------->LBD16                  <---------ARR11(3)          <---------HSFB2a(2)    --------->MYB46(3)--------->ANAC46  <---------At4g35610         *TSS        <---------At4g35610    --------------->AGL15        <------ <---------TOE2(3)     ---------->DOF2<-----------TGA1  <---------ALFIN1         --------->TOE2(3) -LBD16   --------->HSFB2a(2)--------->At4g35610   --------->ANAC58              --------->TOE1(3) <- ================================================================================MADS_MADS    -------   attaagctaagtccagaaaattccatgaagcagcatccatcgtcagcatcttcaagtcacactttttcttattttcgcaaaaaccttcaaaaacccgttc  5287400                                                  ----------->HVH21                                            <---------ARR14(2)                                            --------->ARR14(2)                                           --------->ZAT2                                           <---------At4g35610                                    --------->ANAC58                                    --------->ANAC58                                    --------->ANAC46  <---------MYB59                                   ------>NtERF2 <---------MYB52(1)                                   --------->LBD16--------->WRKY12                            ------>ZmHOX2a(2)    <-----------HVH21                            --------->MYB52(2)  <---------At4g35610         --------->ARR14(2)              --------->HSFB2a(2) <---------ANAC46--------->WRKY38(1)  --------->MYB52(1)              <---------HSFB2a(2)<---------LBD16--------->LBD16     --------->ANAC46        <-----------GT1     <---------MYB46(3)  --------->At4g35610 --------->ANAC58 ---ARR14(2)=======================HOX2a_HOX2a<---------LBD16       --------->ANAC58               <- --------MYB52(1)    --------->TOE1(2)     --------->At4g35610  --------->SPL7              --------- -->ARR14(2)------>ZmHOX2a(1)<-------GAMYB <---------ZAT2     --------->TOE1(2)       ------>ZmHOX2a(1)   cggtctgttttctcctctcgaaaccctcgatcgttgccgcgaaacagctccggtgacctaaaatcgttcgacgaaacggtttctcttcctccttgtcgtt  5287500                                                       <---------ARR14(2)                                                   <---------LBD16               --------->MYB52(2)                 <<<<<<<<<SPL1                            <---------GLK1(2)        <---------O2                              <<<<<<<<<SPL4                            <---------ANAC58        --------->ANAC46                          <<<<<<<<<SPL5                    --------->HSFB2a(2)        --------->O2                          <------------------SPL14            <---------LBD16        --------->TGA1a                ----------------------->TaNAC69(2)        --------->MYB52(1)        <---------TGA1a               --------->MYB52(2)                      --------->ZAT2  <---------DAG2                      <---------MYB46(3)            <---------ETT(2)       <---------ANAC58  <----------DOF2            --------->ARR11(3)  <---------SPL7    <------ZmHOX2a(2)--------->LBD16  ================bZIP_DOF   <---------ARR11(3)<---------------AtSPL3         <---------ZAT2 ----------GT1 --------->ATHB12      <---------TOE1(2) --------->ARR14(2)     --------->At4g35610 ->ID1<-----------GT1------->TEIL   <---------MYB52(1) <---------GLK1(2)      <---------At4g35610 ---   ttcacttttcacgtcgttcattgcatctataggtcttcgtttgttctgcattgtacggattctcttccgatcgacgattcagcttccggtatagcttctc  5287600                                                                                  <---------SPL1(1)                                                                                 <---------SPL7                                                                                 <---------SPL1(2)                                                        <----------DOF2        --------------->AtSPL3                                                   --------->At4g35610         <-------TEIL              --------->AHL20(2)                   <---------ZAT2            ------------------>SPL14            <----------DOF2                        <---------At4g35610      --------->MYB46(3)         <---------ARR11(3)                  <---------ANAC46          --------->ANAC58 --->ZmHOX2a(1)                             <---------TOE2(3)          --------->ANAC58   ctctcttccatggtctttaaatcgtcgtttctgtttgatttttagtaacgttgagctgcttttgttttatcggaagcaacgtccgtacaggtttgcattt  5287700             <---------ANAC58             <---------ANAC58          --------->At5g28300  <-----------RAV1(1)                                     <----------DOF2      --------->MYB52(1)       <---------MYB46(3)   <---------MYB52(1)               <---------YAB1    <----------DOF2     <---------MYB52(1)       <---------TOE2(3)                  --------->ARR11(3)   <---------ANAC58    --------->LBD16         <---------WRKY38(1)                  <---------ARR11(3)   <---------ANAC58  <---------LBD16 <---------GLK1(2)                           <---------GLK1(2)   ttgtagcttaacggtgagtgttttccggtatatttgttggattttctgatcaacgtttgctaaaaaacaccgtgttttatacagattatctttggtattt  5287800  Previous    Next  AGI:  At3g15605.1    Description:  nucleic acid binding / nucleotide binding. similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G11470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44105.1); contains domain RNA-binding domain, RBD (SSF54928) Range:  from: 5287330    to: 5290948    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g15604.1    Description:  unknown protein Range:  from: 5287387    to: 5287551    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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