Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                                <----                                                                                                -----                                                                                               <-----        ----------->GT1                                                                 <------------       --------->DAG2 <---------AHL20(2)                  <---------RVE1(1)     --------->ARR11(3)  <      ---------->DOF2 --------->AHL20(2)                  <---------CCA1(1)     <---------ARR11(3) xx ------>TEIL --------->ARR11(3)   --------->ARR11(3)     --------->ARR11(3)    <---------CCA1(2)<---- --AHL20(2)  <---------ARR11(3)   <---------ARR11(3)     <---------ARR11(3)----------->GT1     ------ ->AHL20(2) <---------CCA1(2)    <---------CCA1(2)     ----------->ARR10---------->DOF2 <------------   tgaaactaaaaagtatatctatatttaaactaggtatatctatgttcgaatataacttagatattttagagactaaaaggtatatctattttcaaattag  5279000       <---------At4g35610 <---------ARR11(3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ARR11(3)            --------->ANAC58 -----ANAC55(2)                --------->ANAC46 --MYB83                       --------->ANAC58 ------>GT1            --------->AHL20(2) ----TOE2(3)           <---------AHL20(1) -----AG <---------YAB1--------->AHL20(1)      <---------ARR11(3) ---------CCA1(2)      <---------AHL20(2)      --------->ARR11(3)                  <-----------GT1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------CCA1(2)       >>>>>>>>>RAP2.2 --MYB46(1)           --------->AHL20(2)  ----------->GT1           <---------ARR11(3) --->MYB59         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->ARR11(3)     --------->AHL20(2) -----AGL1  --------->GLK1(1)<-----------GT1 ------->TEIL          <---------CCA1(2)       <---------AHL20(2)   gtatatctatgctgatttctaccattaaattatacgaaactaaaatgtatatctatattgaaactaggtatatctaaacttgaatttaacttataaattt  5279100                                               <---------ARR11(1)                                               ------->TEIL                                               --------->GLK1(2)                                               <-----------ARR10                                              <---------ARR14(1)              --------->ARR11(3)   <---------ARR11(3)                            --------->ARR11(3)              <---------ARR11(3)   --------->ARR11(3)     <---------AHL20(2)     <---------ARR11(3)             <---------CCA1(2)    <---------CCA1(2)       --------->AHL20(2)    <---------CCA1(2)            ------->TEIL    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            ----------->GT1         ----------->GT1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            ---------->DOF2   tcaaaactaaaatgtatatctatgtataaactaggtatatctatattcgaatctaacttataaattttcaaaactaaaaggtatatctatgtataatcta  5279200                         <---------At4g35610                     --------->GLK1(2)                    <---------GLK1(2)             <---------WOX13(1)            <---------ANAC58            <---------ANAC58    <---------ARR14(2)                                         --------->AtLEC2           --------->ATHB12    <------ZmHOX2a(1)                                      xxxxxxxxxxxxxxx          <---------YAB1<---------YAB1                                                --------->ANAC58  --------->ARR11(3)--------->ARR14(2)                                              ---------->DOF2  <---------ARR11(3)<---------ARR14(2)   --------->ARR11(3)        <---------DEAR3(2) --------->ANAC58 <---------CCA1(2) <------ZmHOX2a(1)     <---------ARR11(3)   ------->TEIL      <---------ZAT14 <----   ggtatatctatgttgattgcaggattctgatgaggaaactgaagctcttcaacctcttaaaatgtacttcggtccgagtgagtatacaaagccattcaag  5279300                                                                                      ------------>CBF                                                                                     ----------->RAV1(1)                                                                                     --------->ANAC46                                                                                    --------->MYB46(3)                                                                                   --------->ANAC58                                                                                   --------->ANAC58                      --------->DAG2                                              --------->PCF2                <---------------AGL15                                           <---------ZAT18         <---------ZAT6           --------->ATHB12                              <---------At4g35610     ---------->DOF2 ---------->DOF2                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxx>smallRNA(si3)          <---------YAB1                            <xxxxxxxxxxxxxxxxsmallRNA(i) -----ICU4      --------------->AGL15              ---------->DOF2      <----------DOF2         <----   attacagcaaagtgttatcttcataaggcagtcggattattggagactcatcttaaagagtctgagttgaagtggtttttggagcacccacaattcaaac  5279400                   <------ZmHOX2a(2)                  <---------ARR14(2)                  --------->ARR14(2)           --------->YAB1        --------->ALFIN1<-------GAMYB          <-------TEIL           ----------->HVH21<---------MYB52(1)        ------->MYC3          --------->DAG2    <---------MYB46(3)        <-------MYC2      --------->YAB1  --------->ALFIN1        ------->MYC2     <---------ATHB12 <-----------RAV1(1)        <-------MYC3------>ZmHOX2a(2)  *TSS    <---------ANAC46 -----ALFIN1     <------ZmHOX2a(1)  <---------ANAC46          --------->SPL7                 --------   acttcttccacatgcataaggatccaaatcataaggtgatgggtatgtggctgttatttcttcgtacaacatgtttagataagaagaaggaagtatggtt  5279500                       --------->ARR14(2)                     <---------MYB52(1)                    --------->LBD16                  <---------LBD16                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)                --------->ARR14(2)             --------->DEAR3(2)                                                                   <--            --------->SPL7                                                   <---------ALFIN1   -----          <---------SPL7                                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------ANAC46                                          --------->YAB1               -----         <---------ANAC58    --------->HSFB2a(2)                   <--------HAHB4          <xxxxxxxxx         <---------ANAC58    <---------HSFB2a(2)                   --------->ATHB51      <---------At4g35610        --------------->AtSPL3                      --------->ICU4 <---------ICU4        <---------ZAT2        <---------------AtSPL8                     >>>>>>>GRF7    --------->ICU4         --------->ZAT2  <---------YAB1<---------ARR14(2)  --------->GLK1(2)<------ZmHOX2a(1)<---------ICU4     --------->At4g35610 --->GT1<---------------AtSPL3<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------YAB1    ----------->HVH21   tattgtcaatggcgtaccgatccggtattctctcgaagaatttgcacttatgtcaggattatactgccataattatcccaaacccttggacagcttgggc  5279600             <------NtERF2           --------->ATERF1(2)           <---------ATERF1(2)          <---------ANAC58          <---------ANAC58                           <---------ANAC46         <---------At4g35610                  <---------ARR14(2)     <---------DAG2                           --------->GLK1(2)     <----------DOF2                          --------->ARR11(3)  <---------ALFIN1                            <---------ARR11(3) -------SPL7------>NtERF2                     --------->ARR14(2)                          <---------At4g35610 ---------->AtSPL3<---------ARR11(3)     <---------ZAT14          --------->ARR11(3)   ----------->RAV1(2) ---------->AtSPL8--------->ARR11(3)     --------->ZAT14----------->GT1           <-----------GT1 xxxxxxxxxxxxxsmallRNA(fl3)        ----------->RAV1(1) --------->ALFIN1      --------->YAB1       ---   tgtaccacttttgctggcaagatgtttggactcggagcaacagttcagtatcttgatgtggagaataagttattgtctatgaaaaaaccttctgatgctc  5279700                                                                       ------>MYB46(1)                                                                       ------>MYB83                                                                     --------->MYB46(3)                                                                    --------->ANAC58                                                                    ----------------->AGL3       <---                                                                    --------->ANAC58             ----                                                                --------->ANAC58                 xxxx                                                                --------->ANAC46                 <---                                                                --------->ANAC58                xxxxx                                                              --------->MYB52(1)          ===========                                                              ------>MYB46(1)             ------>ZmHOX2a(1)                                                             --------->MYB55(1)      xxxxxxxxxxxxxxxx                                                            --------->AtMYB61      --------->ARR14(2)         --------------->AtSPL8                             <---------MYB59        --------->ARR11(3)         --------------->AtSPL3                    --------->ANAC58----------->RAV1(1)   --------->TOE2(3)        --------->At4g35610                ---------->DOF2  --------->MYB46(3)     <---------ARR14(2)        <---------At4g35610    <---------ZAT6      --------->ANAC58------->TEIL    <---------ARR11(3)      <--------P             <---------ANAC46  ----------->GT1------>MYB83       ----------->ARR10 -- -------->RAV1(2)  <---------AHL20(2)--------->ATHB12    <------ZmHOX2a(1) --------->ALFIN1     <----   gtctgagggtagctgtactatattttttatgtagtgtaatcgttggaaagggtaagacaggaccaaacgcaccaaatgtggagaagttcttccttagggc  5279800                                        --------->CCA1(2)                                       --------->ARR11(1)                                       --------->ARR14(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       ------>ZmHOX2a(2)               <---------ARR11(3)     --------->ARR11(3)                <---------ARR14(2) <---------At4g35610                   --------->ARR11(3) --------RAV1(1)               --------->ALFIN1 ----->ALFIN1                 <---------LBD16 xxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------HSFB2a(1)                                <---------ZAT14 ------MYB46(3)               --------->LBD16                                            --------->ZAT14 xxxxxxxxxxxxxxxxxx>smallRNA(se3)    ----------->ARR10                                   --------->ZAT18 =============HOX2a_HOX2a    <---------ANAC58                    <---------ARR11(3)    xxxxxxxxxxxxxx >smallRNA(i)                <---------ANAC58                    --------->ARR11(3)  --------->DAG2 ------->ALFIN1              <---------ANAC46                ---------->DOF2        ---------->DOF2<- -----DEAR3(1)           <---------GLK1(1)           --------->AHL20(2)       --------->At4g35610  --   tgtggctgatctagagttgtgcaaaacatttccgtggggaagatttgcatttgaaaaaaatgtgaaagacattttctatctgatgaaaaagtgcaatgga  5279900  Previous    Next  AGI:  At3g15600.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07770.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43530.1); similar to hypothetical protein B14911_03489 [Bacillus sp. NRRL B-14911] (GB:ZP_01168655.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) Range:  from: 5279439    to: 5281424    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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