Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------At4g35610                                                        <---------ANAC58                                                        <---------ANAC58                                                ------>ZmHOX2a(2)                                               --------->CCA1(2)                            <---------MYB52(2) <------ZmHOX2a(2)               <---------ARR11(3)                            --------->MYB46(3)<-----------ARR10          --------->ANAC58                       --------->YAB1         <---------ARR14(2)         --------->ANAC46                       <---------ICU4         --------->ARR11(3)         --------->ANAC58                      <---------ATHB12        <---------AGP1  <---------At4g35610                   <---------AHL20(2)         --------->AGP1  --------->At4g35610                   --------->AHL20(2)         --------->ARR14(2)       <---------ALFIN1 ->GT1            --------->AHL20(2)          <---------ARR11(3)     --------->AtMYB61     ----------   aaataaaactttcaattcaaataaatcataacaaaccccataagagaagatctaatttgcttgctgctaaaccacacacaagagctctaaaaattgaaaa  5277600                                                                                                -----                                                                                             ------>ZmHOX2a(1)                                                                                             --------                                                           <---------ANAC55(2)           --------->ARR11(3)                                                        --------->ARR14(2)               <---------ARR11(3)                                                        <---------ARR14(2)               <---------ARR14(2)                                              --------->HSFB2a(2)                        --------->ARR14(2)                          <----------DOF2     <---------HSFB2a(2)                       <------ZmHOX2a(1)                     ---------->DOF2      <---------ARR14(2)                          --------->MYB59              --------->AHL20(2)          --------->GLK1(2)--------->ANAC55(2)   <---------TOE2(3)---              <---------AHL20(2)          --------->ARR14(2)<---------MYB59      <---------TOE1(3)---          <---------AHL20(2)      <----------DOF2---------->DOF2          <---------ATHB12 ------>ZmHOX2a(2) ->GT1    --------->AHL20(2)  <-----------GT1 ------>ZmHOX2a(1)         --------->WOX13(1)<------ZmHOX2a(2)   aaaaaaccaaaatttataaattagaaagctttttacctttggagaatcctcgaaagcgaatacataacttccttcaatcaattgaggttaggatcctgaa  5277700                                                                --------->HSFC1(2)                                                                --------->HSFB2a(1)                                                                <---------HSFC1(2)                                                               --------->ARR14(2)                                                     --------->ANAC46                                                     --------->ANAC58                                                     --------->ANAC58--------->HSFB2a(2)                                                 <-----------GT1<---------HSFB2a(1)                                               --------->AHL20(2)    <---------HSFB2a(2)          ---      ----------->RAV1(1)                  <--------HAHB4      --------->ARR11(3)                 <--     --------->ANAC46                      <---------ICU4      <---------ARR11(3)                <--- ----------->RAV1(1)                       --------->YAB1      <---------ARR14(2)                ---- ----->DOF2                 --------->YAB1<---------ATHB12     --------->GLK1(2)                 ---- ->LBD16             --------->ETT(2)   --------->WOX13(1)    <---------GLK1(2)                  <--- ------>ANAC58       ----------->HVH21  --------->YAB1  ----------->GT1                    ---------- ------>ANAC58       <---------ETT(2)  --------->MYB46(3)<---------RAP2.6(3)         ---------->DOF2   aagcaacacaacacaaataagagtcgacagtgatagtatcaacaatcattttaacaagccgtaagaatcttctagtagaataaacacaaaagacagagaa  5277800                               <---------At4g35610                            --------->At4g35610               --------->GLK1(2)                                                                    -  ----------->GT1           <---------HSFC1(2)                                                      <  <---------ANAC46          --------->HSFB2a(1)                                                    <- ------>ARR14(2)            <---------HSFB2a(1)                                                    -- -------ARR14(2)            --------->HSFC1(2)             <---------ANAC46                       --- ------HSFC1(2)<---------ARR14(2)     --------->ANAC58     <---------ANAC55(2)                    <-- ----->HSFC1(2)--------->ARR14(2)     --------->ANAC58     --------->ANAC55(2)                   <--- ----->HSFB2a(1)            <---------At4g35610   --------->ARR14(2)             <---------LBD16 ---- ------HSFB2a(1)            <---------ZAT2      --------->LBD16           <---------YAB1        ----- ->GT1        <---------GLK1(2)--------->At4g35610<---------ARR14(2)    <-----------GT1        <-----   aattcggtgaatttcagaatctgaaatggaagctgctgaaacgctaaacccagaaatggagacgtatgagagaattacgatttcgagggattttttcgcc  5277900        --------->ZAT14        <---------ZAT14    <------NtERF2                                                                      --------->ARR14(2)   --------->LBD16                                                                    --------->ATERF1(1) <------NtERF2                                                                       <---------RAP2.3(1) <---------LBD16                                                                     <---------ATERF1(1) --------->ATERF1(1)                                                                <---------DEAR3(1) ----->NtERF2                                                               <---------ARR14(2) ---------ATERF1(1)                                                         --------->ARR14(2)    *TSS --------ARR14(2)                                          --------->ANAC55(2)     --------->At4g35610 ------->ARR14(2)                                          <---------ANAC58 <---------GLK1(2)  <----- ------>ATERF1(1)                                          <---------ANAC55(2)   ---------->CDC5<---- ----NtERF2               <----------DOF2                  <---------ANAC58------>MYB83<---------ARR14(2) ------ATERF1(1)       <-----------GT1                   <-----------GT1   ------>MYB46(1) ------>ZmHOX2a(1) ----->LBD16           <---------AHL20(2)          ----------->GT1       <---------MYB59------>NtERF2 ---->DEAR3(1)      <---------ICU4            --------->ZAT2          <---------PCF5<---------RAP2.3(2) ----LBD16      ------>ZmHOX2a(2)             <---------ZAT2         <----------ID1<---------At4g35610   ggagccggagaacagtgatccctaattactttcagggtttaatgtctctgctagggtttatacgtgccaaggggaccaaattctcagcggctcctcttgg  5278000                                                           <---------DOF5.7(2)                                                        --------->LBD16                                                       --------->ANAC55(2)                            <---------AHL20(2)         <---------ANAC46                           --------->YAB1              <---------ANAC55(2)                      <-----------TBP                  <---------ANAC58                         <----                    <----------DOF2                    <---------ANAC58                         <---- ----MYB46(3) <---------ARR14(2)                 <---------AHL20(2)                         <-------- ---GAMYB     --------->ARR14(2)             <---------AHL20(2) ----------->GT1            <---------KAN4(1)   ttgaagagtaatctcatatactctttttataaaaatttgtttttgattttttttattccgtaaacgaagtaaattactcagaaaaccctaagaatattgc  5278100           -------->P           ------>MYB46(1)           ------>MYB83          ------>MYB83       ------>ZmHOX2a(1)          ------>MYB46(1)   --------->TOE2(3)            <-----------HVH21        ------->GAMYB      ------>ZmHOX2a(2)          <---------ANAC58  <-----------GT1        --------->ARR14(2)           <---------ANAC58                            ---  --------->YAB1         ------->TEIL       --------->ZAT18                                      ---- -----ANAC58             <---------ARR14(2) <---------ZAT14                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----ANAC58--------->MYB46(3)  --------->YAB1       <---------LBD16       --------->TOE1(3)   ------ ----CBF--------->MYB46(3)<------ZmHOX2a(2) --------->ZAT14                --------->TOE2(3)   <-----   ttaattacaacccaaccagggcaaatggatcctaaaataatccaagtccactgttttcgggtcaaatccaaataaaaccctaattcccctaattctctgc  5278200                                                                                      ------->GAMYB                                                                                     --------->MYB46(3)                                                                                     --------->ANAC46                                                                                   <---------DOF5.7(2)                                                 --------->At5g28300              <---------WRKY12                                            --------->ZAT14                       <---------WRKY38(1) ------>At5g28300       <----------DOF2     <---------ZAT14           --------->TOE2(3)  ----------->RAV1(1) ------->GT1      <----------DOF2       <-----------GT1           <---------ICU4  <---------WRKY45 --->ZAT14       <------------------------ANAC81----------->GT1  <---------ATHB12--------->DOF5.7(2) ----LBD16<-----------GT1          <----------DOF2        ----------->GT1       <-----------HVH21<---   ggtaaaatcgattcacatctcttttcctttgtttcttctttatttcttcactgtaaaatccagtaaaatcattctcaattctcgtcaacgacaacaatat  5278300                          --------->ANAC46                   <---------ARR14(2)                   --------->ARR11(3)                   --------->ARR14(2)                   <---------ARR11(3)           =======================HOX2a_HOX2a           ------>ZmHOX2a(2)         --------->ARR14(2)         <---------ARR11(3)                                                                        <-         --------->ARR11(3)                                                             --------->ARR14(2)         <---------ARR14(2)<------ZmHOX2a(1) <--------P                                 <---------ARR14(2) --------GT1      <---------CCA1(2) --------->ARR11(3) <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   aactgttcgtcgatcttggtatatctacaggaaactaagaaattggggtaagtgatttaactgttcgtcgatttgattcgagttgtttcagattgggttt  5278400                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                           --------->WRKY12                                                                                          <---------MYB52(1)                                                                                         <-------GAMYB                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                      <xxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                   <---------ANAC58 <                                                                                   <---------ANAC58<-                                                                                   --------->ALFIN1--                                                                                  ------->MYC3 <-----                                                                                  <-------MYC3 <-----                                                                                  ------->MYC2 <-----                                                                                  <-------MYC2<------                                                                                ------->TEIL  <------                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                 <------MYB46(1)             --------->ANAC58 <------                                                 <------MYB83                --------->ANAC58 <------            <---------WOX13(1)                  <---------TOE1(2)        <---------MYB52(2)<---------DEAR3(1)          --------->ATHB12               <---------YAB1          <xxxxxxxxxxxxxxxxsmallRNA(i)<------NtERF2   ------>ZmHOX2a(2)               <---------ATHB12   ----------->GT1  ---------->DOF2<xxxxxxxxxxxxxx --------YAB1          <---------ZAT6--------->ARR11(3)         <---------ANAC46xxxxxxxxxxxxxxxxxxxxx   tgtgatcgaaattgattgaagagtagtgctaatccaaatgattttgtttgtaggtttggagaaatggctcgaacaaagaacgcatgtgtgccgttggcgg  5278500  Previous    Next  AGI:  At3g15590.1    Description:  DNA-binding protein, putative. similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G80270.1); similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G80270.2); similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G80270.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO63034.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5275408    to: 5277998    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version