Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              -------                                                                                    ----------->GT1                                                                                  <---------GLK1(2)           --------->MYB52(1)                                             ===========================        <---------bZIP60(1)                                               ===========================        --------->bZIP60(1)                                               <------ZmHOX2a(1)   -------     ----------->HVH21                                                   --------->ANAC46     <------   <---------At4g35610                                                   --------->ANAC58     -------   --------->At4g35610                               <-----------GT1     --------->ANAC58     <------  --------->GLK1(2)                           <-----------GT1            ----------->GT1     <-------   gtggaatctgacataacgttccaattgaatgctaactacagcttgatttttcaattcacaatacacttattgaacaggaaacaagattgtgaatcagatc  5227400 ->ZmHOX2a(2) -ZmHOX2a(2) --->CCA1(2) ---AGP1 -->ARR11(3) =HOX2a_HOX2a ==HOX2a_HOX2a           --------->ZAT18 -->ARR14(2)            ------>ZmHOX2a(2) ---ARR11(3)           <------ZmHOX2a(2)                                             --------->ZAT6 -->AGP1              <---------ARR11(3)                                   --------->HSFC1(2) ---ARR14(2)          --------->ARR11(3)                                   <---------HSFC1(2)      -- --CCA1(2)        ---------->DOF2                                         ----------->ARR10       <--   tgataaaacacttcaaaattcaaagatcgcacagatttagagaactcgaactagatttcgaactacttatagagtgaagcttcgctaacactaatcgaga  5227500                                                                                                    -                                                                                                    <                                                                                                    <                                                                                   --------->HSFC1(2)                                                                                  <---------ALFIN1 <-                                                                               --------->ANAC58    --     --------->YAB1                             <---------At4g35610            --------->ANAC58   <--     --------->HSFB2a(2)                     ---------->DOF2                   --------->ANAC46  ----  <----------DOF2                      --------->GLK1(2)                     --------->MYB52(1)  <--- ------->GLK1(2)                  --------->ANAC58                          --------->TOE1(2) <------ -------GLK1(2)                   --------->ANAC58    <------ZmHOX2a(1)   ------->TEIL        -------   gattctttcagaatcacagatagagattgagcaaaaacgaaattctatgaagcagaggagaagagaagagagtatgaacttacgacacttcttctctgct  5227600  <------NtERF2 ------>NtERF2 --------->RAP2.6(2) -------->ATERF1(2)                                      --------->HSFC1(2) ---------DEAR3(1)   <---------DEAR3(1)                  <---------HSFC1(2) ---------ATERF1(2) <---------------------WRI1   --------->ZAT6             <---------ARR14(2) -----NtERF2    ------>MYB83                    <---------YAB1              <---------GLK1(2) ------->At4g35610 ------->GAMYB               <-----------GT1              --------->ARR14(2)   ---- -------ATERF1(1)--------->SPL7               --------->YAB1    --------->ANAC58       --------->At4g35610 ------>CDC5    ------>MYB46(1)              --------->ICU4     --------->ANAC46       --------->ZAT2 ------DEAR3(1) --------->MYB52(1)      --------->ANAC46--------->ANAC58<---------ANAC58 --------->ZAT18 ---ZAT2      --------->MYB46(3)  <------ZmHOX2a(1)     --------->ANAC58<---------ANAC58 <---------ZAT18 -->ZAT2    -------->P       <------ZmHOX2a(2)<---------ICU4    --------->ANAC58       <---------At4g35610   cggcggcaatggctaacccaacggcgatgagatcgaggataaacacaattatcactacaagcttcgaagccattgctggattttctcagagctcacttat  5227700                                                                                                 <---                                                                                                 ----                                                                                                *TSS                                                                                              <------                                       --------->ZAT2                                        --------                     <----------DOF2   --------->At4g35610       <---------MYB52(1)          --------                    <---------ANAC58   <---------ZAT2    <----------DOF2<---------------------WRI1 ----->ZAT6         <---------ANAC58   <---------At4g35610      --------->TOE2(3)  ---------->DOF2   ctctatctctctctctcaagtagctttctggtgattttctcagctctcactctctctctctttctcccttaatcgacgatgaagtcaaagagacattgac  5227800                         <---------AHL20(1)                         --------->AHL20(1)                         <---------ARR11(3)                         --------->ARR11(3)           <---------AHL20(2) ------MYB59            <---------AHL20(2) -------->CBF       <---------AHL20(2)                                                             -- ---WRKY18(1)       --------->AHL20(2)    <---------TOE2(3)                         <---------AHL20(2) ->WRKY12  --------->AHL20(2) <---------AHL20(2)                 ----------->GT1--------->ICU4    --- ->WRKY38(1)    --------->ATHB12    <---------YAB1             <---------ANAC55(1)  --------->AHL20(2)   ccaattttcgaatttaaatgatttaaatatttttaattctgtttaagaaaacatttaagaagattaagtgtgaaaatgtgcaaaaattaaaaacgtttta  5227900                                                                                                  <--                                                                                   <---------ANAC46                                                                                 <---------ZAT14  <--                                                                            <---------ETT(2)     <---                                                                          <-----------HVH21     <----                     --------->DEAR3(1)                                 ------>ZmHOX2a(2)      <-----                   <---------At5g28300                                --------->ARR14(2)      -------                  <-----------GT1                                     <---------ARR14(2)    ---------        ----------->GT1       <---------TOE2(3)                 ------->GAMYB    --------->At4g35610 ------->DAG2  --------->ANAC46                                <---------LBD16   <---------At4g35610 ------->DOF2---------->DOF2 --------->MYB52(1)              <-----------GT1--------->ETT(2)<--------   aaaagtggattagttaaaagtcaccgtctattaacgaagaagacacattgaatggtttagatttaaccggctgatctgtcgactgctgtataatacgcgt  5228000         --------->At5g28300         --------->DOF5.7(2)        --------->ANAC46           <---------DEAR3(1)      <---------LBD16             <---------ORA47(1)     <---------At5g28300        <---------SPL7    <-----------GT1             <---------DEAR3(2) -------MYB46(3)                <---------MYB46(3) -------DEAR3(2)               <---------At1g77200 ------DEAR3(1)          <---------MYB52(1)<----------DOF2                       <---------TOE2(3) --NtERF2<---------MYB52(1)    <---------DREB2C(2)                               <---------YAB1 ------HVH21            --------->LBD16<----------DOF2                --------->ANAC55(2) -->ANAC46            <---------LBD16<------NtERF2           <---------YAB1     --------->YAB1 >ANAC55(2)     <---------GLK1(2)<-------GAMYB    --------->ANAC46    <---------ANAC55(2) <---------- -ANAC55(2)  <------------MYB.PH3(1)<---------DEAR3(2)    ----------->GT1  --------->MYB46(3)   cggtttttaccggtaactgattcttccggtttgtcggtcggctttctttttcacagaagtatgttaattgttaagtaaccaataagattgcaggtcagtg  5228100                                                           <---------RVE1(1)                                                           <---------CCA1(1)                                                          <---------ARR11(3)                        -                                                 --------->ANAC46                                   <                 <---------ANAC58   <---------YAB1 --------->YAB1                              ------                 <---------ANAC58  --------->AHL20(2)     --------->ARR11(3)                   ------           <---------WRKY38(1)     --------->AHL20(1)    --------->YAB1                        <-----          --------->WRKY18(1)      <---------AHL20(1)   <---------YAB1                         ------         <--------ZAP1             <---------AHL20(2) <---------ICU4                           ------    <---------GLK1(1)             --------->AHL20(2)  --------->YAB1                           ------ <---------TOE2(3)    <---------ANAC46           --------->ANAC58                         <---------- -HVH21 ----------->GT1           --------->YAB1 --------->ANAC58     <---------AHL20(2)  <----------   tttaagaaatcggtcaatagtgtgtcttatttgcaattatattagtcatacacgcataatgatatttttgattttttttttgttaacatatagtagtacg  5228200          --------->YAB1       <----------DOF2       <---------DAG2 --------->YAB1 -------->HAHB4 <---------ICU4 -------->ICU4 ---------YAB1                          <----------DOF2 --->ANAC58                      <---------ANAC55(2) --->ANAC55(1)                   <---------ANAC58 ----ANAC55(2)                   <---------ANAC58 --->ANAC46                      <---------ANAC46 --->ANAC55(2)             <---------TOE2(2)                          <---------YAB1 --->ANAC58                <---------TOE1(2)  <---------ARR14(2)  <---------DAG2               <----- -----AtSPL3      --------->TOE2(3) <---------ZAT18         <---------YAB1 ---------->DOF2   -------- -----AtSPL8 <-----------GT1<---------YAB1    --------->ARR14(2)  <----------DOF2           <--------   taatgatcacttttataacacattaatcttatgtttcgtgaactttagtatacgatggatttatgctactttctgataaaaggcccatattgttatgata  5228300  Previous    Next  AGI:  At3g15480.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52910.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218 (InterPro:IPR009606) Range:  from: 5226255    to: 5227796    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version