Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------LBD16                                <---------TOE2(1)                                <---------TOE1(1)                               =================HOX2a_HOX2a                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                              --------->CCA1(2)                              ==================HOX2a_HOX2a                              =============HOX2a_HOX2a                             --------->ARR14(2)                             --------->ARR11(3)                             <---------ARR11(3)                             <---------ARR14(2)                            <---------GLK1(1)                            --------->GLK1(1)                           ----------->ARR10                       --------->ATERF1(1)                       <------NtERF2                     <---------DEAR3(1)                     <---------ANAC46                     --------->ALFIN1                    <------NtERF2--------->LBD16   --------->YAB1                    --------->ATERF1(1)   --------->ARR11(1)                    <---------LBD16       <---------ARR14(2)                   <---------RAP2.3(1)    --------->ARR14(2)                  <---------RAP2.3(2)    <------ZmHOX2a(1) -------ARR11(3)  <---------DEAR3(1)    ----------->ARR10   <---------ZAT6                     ------ ------>ARR11(3) --------->At4g35610<------ZmHOX2a(1)    --------->YAB1                  ============ -----ZAT6 <---------YAB1 <------ZmHOX2a(1)     <---------GLK1(2)   --------->At4g35610  <------ZmHOX2a(1)   gttcttcagagtcatgagaagcggcggaggagatccgaggagaggattcggaatcgtaatcagagttagaagcggaacaagagcaagaagaggaagaagc  5219800                              <------MYB46(1)                              <------MYB83                        --------->At4g35610                             <---------AtMYB61         --------------->AGL15                            <---------MYB52(1)         <---------------AGL15                          <---------MYB46(3)           ------>ZmHOX2a(1)                    --------->ANAC58                  <-----------------AGL2                    --------->ANAC58                  <-----------------AG     <---------ZAT2       <                    --------->ANAC46                  <-----------------AGL1   --------->At4g35610  -    <------ZmHOX2a(2)     --------->ATHB12    ------>ZmHOX2a(1)   <---------At4g35610 <---------REM1(1) --->At4g35610    ---------->DOF2      ------>ZmHOX2a(1)        <--------P     --------->ZAT2 <------NtERF2 ==========HOX2a_HOX2a   <---------ATHB12 ------>ZmHOX2a(1)  <---------AtMYB61 <---------At4g35610---   taaacgatcaagagactcgtagaagcaatcgttggtgtctcctccttcctcttcttcctcgttttggtagctcatggtcgtagctgtgatgaagccagcg  5219900                                                                                                   <-                                                                                                   <-                            --------->At5g28300                                               <------                           ----------->GT1                                                   --------                           --------->LBD16                                                   <-------                --------->KAN4(2)                                                            <-------               --------->HSFC1(2)                                           --------->DAG2   --------               <---------HSFC1(2)                                          ---------->DOF2   <-------               <---------HSFB2a(1)                                    <---------------AGL15  -------- ---------ARR11(3)        <---------DEAR3(1)                          --------------->AGL15 --------- -------->ARR11(3)       <---------LBD16                              <----------DOF2   --------->AHL20(2) -------->ARR10--------->HSFB2a(1)             ------------------------>ANAC81     --------->GLK1(2)   aagacattcccatcggaaaattccttcgccggtgaatttgatcaaacagaaacaaaacaaaaaaaacgcagactttataaagcaaattctataaatatat  5220000        --------->ANAC58        --------->ANAC58 -----MYB46(1) -----MYB83                                                                                         - ---AHL20(2)                                                                                   ------ ->AHL20(2)                                                        --------->ARR14(2)         ------- --AHL20(1)                                                <-------GAMYB                      <------ --ARR11(3)                        <---------ARR14(2)     <---------MYB46(3)                 <------- ->ARR11(3)                        --------->ARR14(2)     <---------ANAC46        --------->GLK1(2)-- --AHL20(2)               <----------DOF2                ---------->ID1--------->LBD16       <------- ->AHL20(1)               <---------DAG2       <---------LBD16     --------->GLK1(2)        <-------- >AHL20(2)    ---------->DOF2  <---------LBD16--------->ALFIN1     <---------ARR14(2)<---------ANAC46   ttggtttctcaagtcaaaaagattgaaactttttggggattttgtgatttgggggttttgtcgttgaaaaatccgaagaatgagattgtgggttttcggg  5220100        --------->ARR14(1)        --------->CCA1(2)       --------->ARR14(2)       <---------ARR14(2)      --------->At4g35610      <---------At4g35610     ----------->ARR10  <-----------HVH21 -------->DAG2 --->LBD16 --------->At4g35610 -->HSFB2a(2)                                   <---------ANAC46 ---HSFB2a(2)                                  <-------TEIL --LBD16<------ZmHOX2a(2)                   <---------MYB46(3)           <---------ATHB12 -------->DOF2                           <---------LBD16       --------->ZAT14 --ANAC46------>ZmHOX2a(2)      --------->CCA1(2)              <---------ZAT14                    --- -LBD16--------->AGP1---------->DOF2    --------->ALFIN1       --------->REM1(2)                  <--   aaaaagtcagatccgatgaagagcaaagagagagagatgagtttgggggttcgtagagatgtctgtgtagaagaaatcaatggagagagagagagagaga  5220200                                     --------->ZAT2                                     --------->At4g35610                   <----------DOF2 <----------DOF2          <----------DOF2                              <---------ZAT18      >>>>>>>>>MYB2 <---------DAG2          *TSS        <---------At4g35610         ------->TEIL         <------NtERF2 ------>ARR11(3)       <-----------GT1                         <---------ZAT18       --------->At4g35610 -------ARR11(3)<---------MYB52(1)<-------TEIL  <---------AHL20(2)  <----------DOF2 <---------DEAR3(1)   gaacttttttttgtttcggtttttttttcttttgggttcagctctctgttttaatttttggtttgtggacctttgcactttgtaaggcgctgaaaaccaa  5220300                                               <---------AHL20(2)                                         <---------AHL20(2)                                        --------->AHL20(2)                                       <---------YAB1                     <----------DOF2 <---------ICU4                    ------>ZmHOX2a(2)-------->ATHB1                   <------ZmHOX2a(2)--------->ICU4                  --------->AGP1 --------->AHL20(1)                  --------->ARR11(3)<---------ATHB51                  <---------ARR11(3)<---------AHL20(2)                              <---------AHL20(2)                  <---------AGP1 <---------AHL20(1)                                --------->AHL20(2)                 <---------CCA1(2)  --------->AHL20(2)                  <---------AHL20(2)                ----------->ARR10<---------AHL20(2)               ----------->GT1  --------->YAB1         --------->LBD16 ---------->DOF2<---------AHL20(2)---------->DOF2         <---------YAB1        --------->HSFB2a(2)      --------->AHL20(2)  <---------ETT(1)  --------->AHL20(2)    <-------        <---------HSFB2a(2)     --------->AHL20(2)   <----------ID1<---------ARR11(3)   ----------->GT1   agtttttcatccagaaattagatctttaaaagtattaaattattaatttttaattccgacaaaagagaaggtattatatatactattatatggttttaat  5220400                                          <---------AHL20(2)                                       <---------TOE2(3)                                      --------->YAB1                                     <---------ATHB12                                    --------->REM1(2)                                 <---------ATHB12          --------->ATHB12           <---------ANAC58                                --------->ANAC58          <---------YAB1              <---------ANAC58                                --------->ANAC58    <-------MYC3             ---------->DOF2                      ------->TEIL   <---------ATHB51   <----------DOF2  <---------AHL20(2)       ---          --------->AHL20(2)<------ZmHOX2a(1)<---------WOX13(1)         --------->AHL20(2)        --- --AHL20(2)--------->AHL20(1)  --------->WOX13(1)   ------->MYC3 <---------ZAT6       <---------ANAC46   ttgattttgaaaatatatgatatgtatataggacaatcaataatgtaattgccatatgctttgattagtgtccattaaataaagaagggcgtgtatagca  5220500                                 --------->AHL20(2)                                --------->AHL20(1)                                       <---------AHL20(2)                  <---------ANAC58    <---------At5g28300                               --------->AHL20(2)                  <---------ANAC58   <-----------GT1                                   <---------YAB1            <---------AHL20(2)  <---------AHL20(1)                                    --------->AHL20(1)           --------->AHL20(2)<---------AHL20(2)                         <---------AHL20(1)           <---------AHL20(2)--------->AHL20(2)                         --------->AHL20(1)     ------          <---------WOX13(1) --------->AHL20(1)                  <---------AHL20(2)   --------->AHL20(2)  <---------AHL20(2)      --------->YAB1                     --------->AHL20(2)     --------->ICU4 ------>AHL20(2)<-----------GT1 <---------AHL20(2)           <---------AHL20(2)  <------ZmHOX2a(1) ------>ATHB51  <---------AHL20(2)<---------ICU4----------->GT1  <-----------GT1--------->ANAC46    <   ttatttaagttgatttattttcttgctaaaataaaatatttaccacaaaatagtatatagtatttatttacatatatattacaggaaatattatatataa  5220600                                                                                          <---------AHL20(2)                                                                 <---------YAB1       <---------YAB1                                                               <---------AHL20(2)   --------->YAB1                                          <---------AHL20(2)   --------->AHL20(2)  <---------YAB1 --------->ANAC46                        --------->AHL20(2)--------->AHL20(2)   --------->AHL20(2) --->AHL20(2)                         ------>MYB46(1)     --------->ICU4        <---------AHL20(2) -------TEIL         --------->YAB1   ------>MYB83        <---------YAB1   --------->AHL20(2)   aatacatcacaaactaatttcagtgatatttcataaaaccaaatttaaaagtttgaagttattatttaaaattgagtttaaatttatcataaatatttgc  5220700  Previous    Next  AGI:  At3g15470.1    Description:  WD-40 repeat family protein. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G54200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39239.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 5216269    to: 5220225    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version