Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->ANAC58                                         <----------DOF2                             --------->ANAC58                                    <----------DOF2                             --------->ANAC46                 ------->MYC3      --------->YAB1 ------->GAMYB         --------->AHL20(2)              <------ZmHOX2a(1)        <---------ICU4 -------->MYB46(3)  --------->YAB1                    --------->ANAC46--------->MYB46(3)  <---------- -ICU4           --------->YAB1          =====================HOX2a_HOX2a      <---------ATHB12 >YAB1       ---------->DOF2--------->WOX13(1)      <---------LBD16 ----------->RAV1(1)  <---------CCA1(2) >ATHB12  <-------TEIL <---------AHL20(2)------>ZmHOX2a(2)    <-------MYC3--------->TOE2(3)   taacgaccaagatgcaaaagaataataaatcactcaacatcgatctcatcatcttcaggaaacatgtgtgcaacaacttcaatctttacttttatcttct  5212000                                                                                                <----                                                                                ------>MYB46(1) <----                                                                  <---------LBD16            <-------                                                                 --------->CCA1(2)           --------                                                                 --------->ARR14(1)         <--------                                                                --------->ARR11(1)   ----------------                                                                --------->ARR14(2)  --------->ATHB12                                                                <---------ARR14(2) <---------YAB1  <-                                                          =====================HOX2a_HOX2a <------ZmHOX2a(1)                                                          ------>ZmHOX2a(2)     ------>MYB83---------                                                        <---------ARR11(3)xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           ----------->GT1                            <---------YAB1    <------ZmHOX2a(1)<---------TOE2(3)        --------->LBD16                  <---------At4g35610  ----------->ARR10----------->RAV1(1) <- -GT1  <---------HSFB2a(2) <----------DOF2          --------->YAB1<-------TEIL--------->AtMYB61 <----   ccaatttctccagaggtgaattcaatatgctttgaatttcttcagcaaatgttttcatgatccctagatacggaggaacaccaacatcattgaggatttc  5212100         <----------DOF2        <---------ANAC58        <---------ANAC46        <---------ANAC58     <---------RAP2.6(2) -----ANAC58 -----ANAC58                                            <----------DOF2 --GLK1(1)                                           <---------ARR11(1) ->GLK1(1)                                           <---------ARR11(3) -ARR14(2)                                           --------->ARR14(2)                --------->TOE1(3) ----->WRI1                                          <---------ARR14(2)                --------->TOE2(3) --------TOE1(2)                      ------->TEIL   --------->ARR11(3)                <---------MYB59 >ARR14(2)                         <---------ATHB12 <---------CCA1(2)                <--------------- --------TOE2(2)          <---------ICU4     --------->HSFB2a(2) --------->ATHB12   <-----------GT1 -----ANAC46--------->ATHB12 <---------WRKY18(1)    <---------ARR14(1)       ------>ZmHOX2a(1)   gtagattgtggctttgatttgttcttcatcttgaccaatgaactcgtctcgaccatatctttgaagttgatttgtagtccttgttttaaccttactggac  5212200                                                                                            <--------                                                                               ------>ZmHOX2a(2)                                           <---------ETT(2)                   <------ZmHOX2a(2)                                         --------->REM1(2)                   --------->ARR11(3)                                        <---------ANAC46                     --------->ARR14(3)        --------->GLK1(2)             <---------ANAC46                       <---------ARR14(2)       <---------GLK1(2)           <---------DAG2                            <---------ARR11(3)       <---------ARR14(2)          <----------DOF2                           <---------ARR14(3)      <---------At4g35610     --------->ANAC58                               --------->ARR14(2)     -     ----------->ARR10        --------->ANAC58                          ----------->HVH21  <---------ANAC58 --AGL1--------->ARR14(2)   <-----------RAV1(2)                   ---------->DOF2          <---------ANAC58   atgtagtcagattctccatcactatttggctcaggcacttttgtgtagacaacttcaaaatcaaacaaaaaagtctgacgatcttgagttgtttctttcg  5212300            <------NtERF2            --------->ATERF1(1)            --------->TGA2(2)           <-----------HVH21                                                      ---------->DOF2           <-----------TGA1                                             <--------ATHB1          <---------ANAC58                                              <------------ATHB5          <---------ANAC58                                <---------GLK1(2) ----------->GT1          <---------bZIP60(1)                             <---------ICU4--------->YAB1      <---------WOX13(1)                            --------->ANAC58    --------->ATHB12     <---------GLK1(2)                              --------->ANAC58   --------->ICU4    --------->ATHB12                         --------->ANAC46          <---------ATHB12 --DOF2   --------->bZIP60(1)      <-------TEIL     --------->ANAC46   <---------ATHB51 -------->YAB1                 --------->ANAC46  --------->ZAT14   ------------>CBF               <--   aataatagattggcgtcaccatacatgtactatccgatacatcatccacaatacactccataatctctatgcaatgatgggaaaaaaagaagttaagaga  5212400                                               ----------->GT1                       ----------->GT1      ---------->DOF2            --------->ANAC58              ----------->HVH21            --------->ANAC46            <---------ANAC46                 --------->ICU4   <------MYB46(1)--------->YAB1 <---------ARR11(3)               --------->ICU4                    <   <------MYB83--------->CCA1(2) --------->AHL20(1)            <------ZmHOX2a(1)             --------  --------->MYB59<---------YAB1  --------->ARR11(3)         <---------LBD16      <------------CBF <-- -------ZAT6--------->ANAC58     <---------AHL20(1) <------------CBF    <------------CBF     <-------   gagttaggtttttcaagctatgagagtgtataaaaaatatttgtgtgaaaggaaaattgtaaccaggaatgagtaattgttgggattgaatacgagattt  5212500                                                                                          --------->TOE2(3)                                                                                          --------->YAB1                                                                                          --------->TOE1(3)                                         <---------ICU4                                  ------------                                         --------->YAB1                                  ------------                            --------->AHL20(2)                                           <-----------          <---------YAB1    <---------AHL20(1)                                          ------->TEIL         ------------>CBF   <---------AHL20(2)                                   <-------TEIL        <-----------GT1    --------->AHL20(2)                                <---------TOE1(3)     ----------->GT1     --------->TOE2(3)  <---------ICU4                <---------MYB52(1)--------- ------ZmHOX2a(1) --------->GLK1(1)     <---------YAB1                   --------->TOE1(3)----------- ->ARR11(3)       <---------GLK1(1) <---------WOX13(1)         --------->YAB1<---------TOE2(3)     <- -------TOE2(3) <------ZmHOX2a(1)  <------------CBF---------->DOF2       --------->TOE2(3)<---------- --ARR11(3)   --------->YAB1--------->AHL20(1)<----------ID1  <-------TEIL--------->DOF5.7(2)      --   taggaaatagttacaataggaattcttcattaaattagattgatcataactacaaaagttaacattcatacatatcgttaaggttcgatgaaccataaat  5212600                            >>>>>>>>>ARR1                            <------------CBF                            >>>>>>>>>ARR2                  --------->AHL20(1)                    --------->YAB1        <---------RVE1(1)  --------->ATHB12 <---------ARR11(3)                                      - ----->AGL2       --------->ARR11(3)        --------->ARR11(3)                                  ----- ----->AGL3       <---------ARR11(3)       --------->CCA1(1)                                    <---- ------AGL3  --------->AHL20(2)        --------->AHL20(1)                 <-----------GT1      ------ -->TBP<---------MYB52(1) <---------YAB1   --------->RVE1(1)           --------->ANAC46        ------ ---->AGL15 --------->AHL20(2)         <---------AHL20(2)              --------->ANAC55(2) --------->AHL20(2) --------ARR11(3)--------->CCA1(1)     --------->AHL20(2)     --------->YAB1            <<<<<<<<<WRKY18 -----AGL15 <---------AHL20(2)         <---------AHL20(1)   <---------ARR11(3)     <---------At4g35610 ------->ARR11(3)--------->RVE1(1)  --------->YAB1<---------CCA1(2)  <-----------GT1  <-----------HVH21   agatattccgatatttaaaatatcttatatgattgtattaataaaatatctcatatattcaaaatcatatttcacttaactatttcgctgtcaaaaaata  5212700      <----------DOF2      <---------DAG2   <---------ALFIN1                                   <-------MYC2                                <-- -------->P                                           ------->MYC2                               ---- ------>MYB46(1)                                      ------->MYC3                            ------- ------>MYB83                                         <-------MYC3                        <---------- ----->ZmHOX2a(1)                                    --------->ANAC58             <---------ARR11(3) ---->ARR11(3)                                <---------ANAC58     <---------CCA1(2)     --------->ANAC46 -----ARR11(3)                                <---------ANAC58   --------->YAB1   --------->ARR11(3) --->CCA1(1)                          <---------DAG2 ----------->GT1          ---------->DOF2 <------ --->RVE1(1)  <---------ICU4          <----------DOF2--------->ANAC58<---------YAB1  <-----------GT1   tcctaccacttttccaacatgacaaaaaaaaaacatactacttttctatcgtggcacgtttaaaaaatcatatcattccaaaaagatttactcgtcagat  5212800            <---------ICU4            --------->ATHB12           --------->ICU4           <---------YAB1         <---------ICU4         --------->YAB1                     --------->ANAC46        <---------ATHB12                 -------->P  <---------ARR11(3)                     ------>MYB46(1)  <-----------ARR10                      --------->MYB52(1)  --------->ARR11(3)                     ------>MYB83 --------->CCA1(1)                      --------->MYB55(1) --------->RVE1(1)                     <---------MYB59 -------AHL20(2)                       <---------MYB111(2) ----->AHL20(2)                        <---------MYB111(1) -->At4g35610        <-----------GT1   <---------MYB46(2)                                     ------- -HVH21 --------->ICU4          <---------AHL20(2)<----------DOF2 <-----------GT1            -------- ---At4g35610     --------->ARR14(2)<-----------GT1        ---------->DOF2               ---------->DOF2   taaatatctaatcatcattggattcacaatttgtttatttacctaccagacactttaaaaaaaaagattaactacagaataattttgtctaaaaagaaac  5212900  Previous    Next  AGI:  At3g15440.1    Description:  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G15740.1) Range:  from: 5211930    to: 5212361    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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