Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ANAC46     <---------ZAT14     --------->ZAT14    <---------ALFIN1    --------->AtMYB61   --------->ANAC46                                                    <-----------HVH21   --------->MYB46(3)                                                 --------->TGA1a  ------>MYB83           --------->ZAT2          --------->ANAC46     ===================bZIP_DOF  ------>MYB46(1)        <---------At4g35610 <-----------HVH21       ------->MYC3 --------->ANAC46        --------->At4g35610<----------DOF2          <-------MYC3                <--- -------->MYB46(3)       <---------ZAT2     ====================================bZIP_DOF <---------WRKY18(1) ------->DEAR3(2)       ------>MYB83       <---------DAG2  --------->ANAC58             ----------->HVH21 ---->TEIL              ------>MYB46(1) <---------ALFIN1   --------->ANAC58   ---------->DOF2    ---- ------>PCF2  <---------CCA1(2)        <---------ZAT18 <------ZmHOX2a(1)      =======================   aacccaccacactactatatcccaccaagctgtccccattgtccacctttcacatcaggacaagacaaacacatgtcagacaaaggagccatgaccgaag  5202900              <---------LBD16           --------->ZAT14           <---------ZAT14          <-----------HVH21         ====================================bZIP_DOF         --------->O2         --------->TGA1a         --------->bZIP60(2)         --------->ANAC46        ------>MYB46(1)        ------>MYB83       <---------ALFIN1      --------->MYB46(3)     --------->ANAC58                                                     <---------ICU4     --------->ANAC58 <-------TEIL                                       --------->ICU4    --------->PCF2   --------->CCA1(2)        --------->AtLEC2         --------->YAB1 ------ARR11(3)    --------->GLK1(1)          --------->ANAC46 <---------AHL20(2) ----->ARR11(3) --------->LBD16   <----------DOF2              --------->AHL20(2)                ---- ==================bZIP_DOF    <---------TOE1(3)              <---------ATHB12                 <-----   ctcttgcacccacttcaccggagatacatgtttaagctttaagagtccatgaaacaccagtctaataaatcactcataatgaaatctattttggtttata  5203000                                                --------->CCA1(2)                                      --------->ANAC58                                      ----------->GT1                              <---------ANAC58 --------->ARR11(3)                              <---------ANAC58 <---------ARR11(3)      --------->YAB1 ------>DOF2       --------->YAB1     --------->ANAC58        <-------TEIL ----YAB1---------->DOF2   <----------DOF2 ---------->DOF2 --------->GLK1(1)                       --   aaagcttcacagaaagttgaataatacaactttcttgctcaagtaaaaagatatataagggaaatgcatataagaataagtgagaagtactcagagacag  5203100                      <------NtERF2                      --------->ZAT2                         ----------->HVH21                      <---------ZAT2              <---------ARR14(2)           <---------TOE2(3)                      ------->TEIL                         <---------ETT(2)      --------->ATHB12<---------At4g35610         --------->ARR14(2)      <---------AHL20(2)    <---------WOX13(1)--------->At4g35610        <---------CCA1(2)        --------->AHL20(2)  <------ -------->DOF2   --------->MYB59       <---------AtLEC2     <---------WOX13(1)         <---------ZAT18   aaaaagattgattaagaattaggcagctggtaattgcatttccatggctgtgtatctgtatgactgacaaatgagtttaaatagaccggtccacaaatca  5203200                       --------->ARR14(2)                       <---------ARR14(2)                                                          *TSS                  ----------->GT1  <---------At4g35610                                             <-            <----------DOF2    <----------DOF2  --------->TOE2(3)                      ---------->DOF2   <---------At4g35610 --------->TOE1(2)  --------->AHL20(2)             ----------->GT1        <---- ---ATHB12  --------->TOE2(3)------->TEIL <---------AHL20(2)        ---------->DOF2 --------->TOE2(3)   agttaagctctctactttaatggaaaatacgaactttagcttatataatttcttaatttgaaatgacataaaaagaggtgaatttttcttaaagcattaa  5203300                                                                                                <----                             <---------ICU4                  <------ZmHOX2a(2)               --------                             --------->MYB52(1)     --------->ANAC58                        <--------                   <------NtERF2                    --------->ANAC58                        ---------               <---------MYB46(3)                  ------->TEIL                          ------>ZmHOX2a(2)     ---------->DOF2        --------->ICU4      --------->MYB46(3)                     --------->ARR14(2)   <---------HSFB2a(2)    --------->YAB1      --------->MYB52(1)                 <---------AHL20(2)   --------->HSFB2a(2)  --------->At5g28300  --------->TOE1(2)                  --------->AHL20(2)---  ----------------->AG ----------->GT1      --------->MYB46(3)               --------->AHL20(2) <---- ---------DOF2<---------AtMYB61             <---------MYB52(2)               --------->ICU4 <-------- -------GT1   --------->ALFIN1   <---------LBD16<---------MYB52(2)      ----------->GT1<---------ARR14(2)   actttccgaaaggagagtggtggcactgtaataacgacggagaagaacgaacgaacgcgagagatcgagagagagagaaatatttaatggatcggattct  5203400    <---------At4g35610    --------->At4g35610    --------->ZAT2                                     <-------TEIL    <---------ZAT2                                    <------ZmHOX2a(2) -----HSFB2a(2)                                      --------->AGP1 ->GLK1(2)                ------->TEIL               --------->ARR14(2) -ARR14(2)           --------->At4g35610             <---------ARR14(2)            <---------GLK1(2) >ARR14(2)           <---------At4g35610             --------->ARR11(3)            --------->ARR11(3) ------->DOF2       --------->MYB52(2)         --------->ANAC58              <---------GLK1(1) -----YAB1   ----------->RAV1(2)               --------->ANAC58              --------->GLK1(1) -GLK1(2)   --------->ARR11(3)      <---------ATHB12 <---------ARR11(3)<----------DOF2  <-----------RAV1(1)   gaaagcagctcgaacatctggttcgctgaatctttccaatcgttctctcaagtaagatccattttttagtcttctttggatttcagatttttgtgggatt  5203500                                                       ------>ZmHOX2a(2)                                                   <---------YAB1                         --------->ATHB12                                            --------->YAB1                               <---------YAB1                              ----------->GT1   <----------DOF2                        --------->YAB1                     <---------ZAT6      --------->WOX13(1)                  <----------DOF2    -----   agattgttttagtttttcgaattgtgttagaaatgtgaatcatctatcatcttttgatcggggctcagtaagttttcgtcttttctaaattatcattgaa  5203600                                          <---------YAB1                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)                                       <---------ARR11(3)                                       --------->ARR11(3)                                   --------->ANAC55(2)                                   <---------O2                                   --------->O2                                   <---------ANAC55(2) <---------At4g35610                               <-----------HVH21       --------->At4g35610                           ----------->RAV1(2)         --------->ZAT2                      ==========================HOX2a_HOX2a                 --------->ANAC46                      =========================HOX2a_HOX2a                  --------->ANAC58        <                      ------>ZmHOX2a(1)<---------ARR14(3)         <----------DOF2         --------->ATHB12 -->TEIL            ------>ZmHOX2a(2)  --------->ARR14(3)   ---------->DOF2 --------->ANAC58       --   tcttcgatgttagaagttttgatcctattacctggtcacgagatctcattgtatatgagctgcaaagtctttgtttacacgactgtttatattgatttga  5203700                     ------>MYB46(1)                     ------>MYB83                                         <------MYB46(1)                    --------->MYB55(1)                    <------ZmHOX2a(1)     --------->YAB1                   <---------MYB59                 --------->LBD16        <------MYB83                   <---------MYB46(2)           --------->MYB52(1)        <---------At4g35610         <---------LBD16  <---------ANAC46    --------->MYB46(3)      --------->MYB55(2)        <---------LBD16  <---------TOE2(3)    <---------MYB52(2)      <---------MYB46(3) -------TEIL       <---------MYB111(1)       --------->DEAR3(2)      --------->ALFIN1 ------->GLK1(2) ------->TEIL        --------->ATHB12    ----------->GT1 <---------DEAR3(1)   <------   gattcaattttcagggatgtacctactgaggtatatcaatgtttggaaacgaccggagaaggagaaaactggtgggaggtgatcaaaatgttccatcttt  5203800  Previous    Next  AGI:  At3g15400.1    Description:  ATA20 (Arabidopsis thaliana anther 20). similar to ATA20-like protein [Brassica juncea] (GB:ABV25700.1) Range:  from: 5201651    to: 5203204    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g15410.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G17440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39249.1); similar to Os02g0826600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048588.1); similar to hypothetical protein [Silene latifolia] (GB:CAA73132.1); contains InterPro domain Leucine-rich repeat-containing protein (InterPro:IPR015766); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype (InterPro:IPR003591) Range:  from: 5203299    to: 5207566    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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