Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                            <--------                                                                                           <---------YAB1 ------------>AG<----------DOF2                                                       --------->ANAC55(2) -GT1      ---------->ID1                                                          <---------AHL20(2)   caaatcgagttttgtcttcttttttttttctctcaaaacaagctcaatactatttggaatcgagttttgaacaagttttctctaatttatgtgatcataa  5188000                               <---------ARR14(2)   <-----------GT1                               --------->ARR14(2)<---------ICU4                               --------->GLK1(2)--------->AHL20(2)      <-----------GT1                              <---------GLK1(1) <---------AHL20(2) ----------->GT1                          --------->AtLEC2      --------->AHL20(1)--------->DAG2               <----- >YAB1               ------->TEIL        <---------TOE2(3)  ---------->DOF2      <---------AHL20(2) -ICU4     --------->GLK1(2)  <---------CCA1(2)--------->AHL20(2)---------->DOF2--------->AHL20(2)---   cgcttagtaatagaatccatatgtatttatgcaaatctgttttaagaaaaaaaattactctccaaagaaaagttaaactatatataatatagacaccctt  5188100                                                                                                  ---                                                                                                  <--                                                                                             <-------                             --------->TOE2(3)                                               <-------                        ------>ZmHOX2a(1)                                                  ------>NtERF2        --------->CCA1(2)    --------->TOE1(3)                                          <---------At4g35610   ----------->GT1     --------->TOE2(3)                                                --------->At4g35610  --------->DAG2       --------->TOE1(3)                                                --------->ZAT14 ---------->DOF2     <---------ATHB12<---------TOE2(3)                                 --------->ALFIN1 -----DOF2          <---------ARR14(2)                                          ---------->DOF2------ ------>YAB1        --------->ARR14(2)     ---------->DOF2    --------------------->WRI1--------->ZAT2   tcataaagtgatataagagtccaatcctcaaccttaactaatgaaaaaagaacatgtccgtcttcgtaaatagaatcgaccttatagcagtgctgcctaa  5188200                   --------->MYB52(1)                 <---------MYB46(2)                 <---------MYB59            --------->At4g35610            --------->ZAT2            --------->ABI4(2)            <---------At4g35610            <---------ZAT2         <---------ANAC58         <---------ANAC46         <---------ANAC58        <---------DEAR3(1)                   ------->GAMYB       <---------ZAT14                    --------->MYB52(1)       --------->ZAT18------->GAMYB     <---------MYB46(2)       <---------ABI4(1)                <---------MYB59 ---->GAMYB <---------ATERF1(1)       ------>NtERF2 -------MYB59  ------>NtERF2       <---------At4g35610           <------MYB83 --MYB46(2)--------->ALFIN1        --------->At4g35610           <------MYB46(1)  --------->MYB52(1)- --MYB59--------->ALFIN1      --------->At4g35610                <---------DEAR3(2)           <------ZmHOX2a(1) --->MYB52(1)--------->ATERF1(1)  --------->ALFIN1       <---------YAB1          ----------->HVH21---   ccgaattggtgcggtgctgcctaaccgaaatcagatgtgctgcctaaccgaaatcaaatttgatagtcggtctactaaaacaattgacggtttacaggag  5188300                                            <------ZmHOX2a(1)                                        <---------ANAC46                                        <---------ANAC58                                        <---------ANAC58                                       <------NtERF2                                   <---------O2                                   <---------TGA1a                                   --------->TGA1a                                   <---------ANAC55(2)                                   --------->O2--------->AHL20(2)                                   --------->bZIP60(1)                                   <---------ANAC58                                   --------->ANAC55(2)                                   <---------ANAC46                                   <---------ANAC58                                   <---------bZIP60(1)                                              <                                  ----------->STF1                                                  -                                ----------->TGA1                                                    <                          ===================bZIP_DOF                                              <-                     ---------->DOF2 --------->ALFIN1                                             ---                     ========================bZIP_DOF                              --------->AtLEC2<-              <---------MYB52(1)----------->HVH21                                 --------->WOX13(1)-           ---------->ID1 ---------->DOF2  ----------->GT1                       *TSS      <--------- ----->ZmHOX2a(1) --------->TOE2(3)<---------bZIP60(2)                        --------->ANAC58   ---- ------>ZAT18 --------->DOF5.7(2) <-----------------------TaNAC69(2)          --------->ANAC58   ----   tcctctaaacgttgtcgttatctcaaaggaaagaatgacgtggcgaggataaaatcgcattcgcctctgtgtgtgttctcaagtcattcaaattgtcacc  5188400                                                                                      <---------ANAC46                                                                                     --------->LBD16                                                                                   <---------LBD16 --------->At4g35610                                                             --------->PCF2 <---------At4g35610                                                     ----------->HVH21 ---------ARR14(2)                                                      <-----------TGA1 ------>TEIL                                 <---------At4g35610        <-----------HVH21 ---------ARR11(1)                <---------ARR11(3)        <---------MYB52(1) ----------->HVH21 --------CCA1(2)                  --------->ARR11(3)     <------NtERF2 <---------ANAC58 ------>LBD16                    --------->RVE1(1)     <---------bZIP60(1)    <-----------HVH21 --------ARR14(1)                --------->CCA1(1)     <---------ANAC58--------->ANAC55(2) -------->ARR14(2)           --------->AHL20(2)        <---------ANAC46<---------ANAC55(2)        <-- --HVH21               --------->ANAC58      --------->At4g35610       <---------ANAC58<-------MYC3 ----->ANAC55(2)       --------->ANAC58 <---------ZAT14<---------ANAC58--------->ANAC46------->MYC3 ----->ANAC46       --------->MYB46(3)  --------->ZAT14--------->bZIP60(1) <---------At5g28300    ---   cgtatctgccaaaaaccctctaaccactcaaaaaaatatctctgctctgctccaatggcgtcgttactcgattccgtcaccgtgacccgcgtgttttctc  5188500                                                         <---------GLK1(1)                                                        <---------ARR14(2)                                                    <------NtERF2------>NtERF2                                        <---------MYB46(3)      --------->ANAC46         --------->ARR14(2)             <---------DEAR3(2)      --------->ANAC58         <---------ARR14(2)            <---------DEAR3(1)--------->GLK1(1)       <---------RAP2.3(1)            <---------MYB52(1)--------->ARR14(2)      <---------ANAC58               <-----------HVH21--------->LBD16      <---------ANAC58          --------->ZAT2      <---------LBD16        --------->HSFC1(1)      <---------ANAC46          --------->At4g35610------>NtERF2--------->ANAC58      <---------RAP2.3(2)    ----------->RAV1(2)  <---------DEAR3(1)       --------->HSFB2a(2)      <---------RAP2.6(2)    <---------At4g35610  --------->ANAC46 <-----------RAV1(2)              <     <---------LBD16         --------->At4g35610  --------->DEAR3(1)      <---------LBD16           - -------At4g35610            --------->ZAT2    --------->ANAC46<---------LBD16 <---------GLK1(1)    < --->NtERF2                  <---------ZAT2  <-----------GT1<-----------GT1<---------HSFB2a(2)    <--   tgccgattgcggcttcggtctcgtcttcttcagctgctccgtcggtttcacgacgccggatttctcccgccaggtttctggaattcagaggtttgaagtc  5188600                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   <-         <------MYB83                                                                              --         <------MYB46(1)                                        <---------MYB46(3)                ---        --------->MYB111(2)                                    --------->ALFIN1                   ---        --------->MYB46(2)                          --------->GLK1(2)                            <---   <------NtERF2                                   <---------ARR14(2)                           <----  --------->LBD16                                  --------->ARR14(2) ------->TEIL   <-----------RAV1(2) ---------HSFB2a(2)                                <---------GLK1(2)  --------->ARR14(2)     <------- -------->HSFB2a(2)                   --------->ARR14(2)     --------------------->WRI1 <------ZmHOX2a(1) ---------LBD16                       <---------ARR14(2)    <---------DEAR3(1)       ================ -------REM1(2)       <------NtERF2   --------->GLK1(2)    <---------LBD16----------->RAV1(2)--------   ttcgcggagtttggtgactcagtcggccagtctgggtgcgaatcgtagaaccagaatcgctcgcggtggacgaatcgcctgtgaggctcaggacaccact  5188700       <------NtERF2      ------>NtERF2      <-----------HVH21     --------->DEAR3(1)     --------->RAP2.3(2)     --------->RAP2.3(3)    --------->RAP2.3(1)    --------->DEAR4(2)    --------->RRTF1(1)    --------->ATERF1(1)    --------->ERF1    <------NtERF2   --------->ABI4(1)   ------>NtERF2   <---------ATERF1(1)  --------->DREB2C(2)  --------->RAP2.6(2)  --------->RRTF1(3)  --------->DEAR3(1)  <---------DEAR3(1)  --------->ATERF1(2)  --------->RAP2.3(2)  --------->RRTF1(2)  --------->RAP2.3(3) --------->RRTF1(1) --------->ATERF1(1) <------NtERF2 --------->RAP2.6(1) --------->ERF1 --------->DEAR4(2) --------->ORA47(2) --------->RAP2.3(1) ----->NtERF2 -------->ABI4(1) ---------At4g35610 ---------ATERF1(1)                                      ---------->DOF2 -------->DREB2C(1)                                   --------->TOE1(3) -------->At4g35610                                   --------->TOE2(3) ---------RAP2.3(1)                                 ------->TEIL ---------DREB2C(1)                             ------>ZmHOX2a(2) ------->RAP2.6(2)                              ===========================HOX2a_HOX2a ------->ATERF1(2)                             ============================HOX2a_HOX2a ------->DEAR3(1)                              <------ZmHOX2a(2) --------ATERF1(2)                             --------->CCA1(2) ------->RAP2.3(2)                            --------->ARR11(3)                               <----- ------>ERF1                                  <---------AGP1                                   <----- ------>RAP2.3(1)                             <---------ARR14(2)                               <----- ------ATERF1(1)                              --------->ARR14(2)                             <------- -------RAV1(1)                               <---------ARR11(3)                          <---------ICU4 --ALFIN1   ----------->GT1                   --------->AGP1         <---------ARR14(2)  <---------AHL20(2) =======RAV<---------TOE1(2)                 <---------CCA1(2)       --------->ARR14(2)  <---------YAB1 ->AtMYB61 <---------TOE2(2)<---------YAB1  ----------->ARR10       <------ZmHOX2a(1)    --------->AHL20(2)   gccgccgccgtcgaaggtaacttcagttttcttatagtacaactcgtagatctgaaccttaaatcagtgaggattcaacttcatcatctatataattact  5188800                                                                                     --------->TOE2(3)          <----------DOF2                                   <---------ARR14(2)     <---------TOE1(3)  <---------MYB46(3)                            --------->ATHB12                  <---------DOF5.7(2) ----ANAC58                                    <-------TEIL <---------GLK1(2)    <---------WRKY38(1) ----ANAC58                                 <------ZmHOX2a(1)   <---------YAB1   <---------WRKY12 ----ANAC46                             --------->TOE1(2)   --------->ARR14(2)   <---------WRKY45 --AHL20(2)    <---------ZAT6         --------->ZAT6   <---------ANAC46     --------->ZAT14     -----   tggattgttagtctttagtattatctgatttagttctctaaaactaggattcatagggagtggattctgataaaacattgtagtcaacgttattgaatac  5188900  Previous    Next  AGI:  At3g15360.1    Description:  ATHM4 (Arabidopsis thioredoxin M-type 4); thiol-disulfide exchange intermediate. Identical to Thioredoxin M-type 4, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SEU6;GB:Q9LDP6); similar to ATHM1 (Arabidopsis thioredoxin M-type 1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G03680.1); similar to putative thioredoxin m2 [Pisum sativum] (GB:CAC69854.1); contains InterPro domain Thioredoxin family (InterPro:IPR015467); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); Range:  from: 5188381    to: 5189704    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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