Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->YAB1    <---------ATHB12 --------->AHL20(2) <---------AHL20(2) ---------AHL20(2)                                                                                  - -------->AHL20(2)                                                                                  < -----YAB1                 --------->TOE2(1)                                                 <------- -----AHL20(2)             --------->TOE1(1)               <----------DOF2             <---------ARR11(3) -->YAB1<---------ATHB12  --------------->AtSPL8<---------YAB1                         --------->ARR11(3) --AHL20(2)            <-------TEIL<----------DOF2   --------->ZAT14                  <---------CCA1(2) ->AHL20(2)          <---------GLK1(2)        --------->RVE1(1)                     --------->AHL20(2) >AHL20(2)          --------->At4g35610   --------->AHL20(2)                        --------->YAB1---   aatttaatcaatgatactagtcagattcatcgtacttctttagaaaaaatatcagtgtattctttataacttaaaaaacaactcaattatatcttctcat  5183300             --------->KAN4(2)            <---------KAN4(1)           <---------YAB1             --------->ANAC46           <---------MYB52(1)         --------->YAB1               --------->ANAC58        --------->MYB46(3)        --------->ICU4    --------->YAB1 <---------ARR14(2)  ------>MYB83 -------->ARR14(2)     --------------->AGL15                 -------->P ---------GLK1(2)      <---------------AGL15    --------->AHL20(2)      <-----------GT1 --YAB1 <---------YAB1<---------YAB1--------->MYB52(1)       ------>MYB46(1)                        - -------->ARR10    <---------MYB52(1) --------->ANAC58      --------->MYB52(1) <---------ATHB12    <-   tagatttgctatgattattctgttactataaaaaaaaaaaacggaaccaaaaaaatagttcccaaccgttggattaacccaataacttgtttatctcaca  5183400                                            ---------->ID1                                        --------->TOE2(3)                                     --------->MYB52(1)                                     ------>MYB83                                     ------>MYB46(1)                                   <---------MYB59                          --------->At4g35610                                   <---------MYB52(2)                       <---------At4g35610                                   <---------MYB111(2)                      --------->ZAT2                                   --------->AtMYB61                       ----------->RAV1(1)                                   <---------MYB46(2)                    --------->At4g35610                                   <---------MYB111(1)                   <---------At4g35610    <----                                  <---------ANAC55(2)               --------->ETT(2)            -----              --------->YAB1      --------->At4g35610            <---------ANAC58  --------->ZAT18 -------->MYB52(1)                --------->ANAC55(2)            <---------ANAC46  <---------ZAT14 --------SPL7<---------YAB1     <-----------GT1                  <---------ANAC58 --------->AtMYB61   tcgaacggttctaaaatcatagccttggtcgaaatcacctaaccttgttgtttaagctcggtctatttcgtctacagcagcagaccacactagtactagt  5183500                                                                                 <---------ANAC58                                                                              <-------MYC3                                                                              ------->MYC3                                                                         ----------->RAV1(1)                                                                        <---------TCP15(1)                                                                       --------->TCP11(2)                                                                       <---------PCF2                                                                       --------->PCF5                                                                       --------->TCP15(1)                                                                       --------->TCP20                         <---------AHL20(2)                           <---------TCP15(2)                         --------->AHL20(2)                           ----------->TCP11(1)   --------                <---------MYB52(1)                                    <---------TCP23       ---------               --------->At5g28300                         ----------->GT1<------NtERF2     <--------              ----------->GT1                           <---------WRKY12--------->PCF2      <--------        --------->YAB1   <--------ATHB1               <-----------HVH21--------->TCP16(1)   <--------        <---------ICU4   <---------ICU4              ------->GAMYB   <---------ZAT18        <--------     --------->REM1(1)   --------->ATHB51           --------->MYB46(3)<---------ATERF1(1)   <--------     --------->YAB1     <---------YAB1              <------------AtMYB77<---------TCP20 <----------DOF2  --------->TOE2(3)     --------->ICU4         --------->ANAC58     --------->ALFIN1----------->ARR10 -----------AtSPL3    --------->YAB1           --------->YAB1    --------->DAG2  <---------ANAC46   < ---------->AtSPL8   <---------AHL20(2)        --------->ANAC58 ---------->DOF2  <---------ANAC58   <   agtaccttcatcatcaccgttaaataataatttccaatataaacttcaatcgcaaccgtcaatgtaaaaagtgggccccatatgcgtagactttccgtat  5183600                                                                              --------->ARR11(3)                                                                      <---------AHL20(2)                                                                      <---------AHL20(1) ->LBD16                                                              --------->AHL20(1) >ANAC55(2)                                                           --------->AHL20(2) -ANAC46                                    <---------YAB1        --------->AHL20(2) -ANAC58                                  <---------ICU4          <---------AHL20(2) -ANAC58  --------->YAB1                  --------->YAB1        <----------DOF2     <------ZmHOX2a(1) -ANAC55(1)    --------->ANAC58     --------->TOE2(3)        --------->ARR11(3)   <---------TOE2(3) -ANAC55(2)    --------->ANAC58   <---------YAB1             <---------ARR11(3)--------->CCA1(2) ---------ANAC58         ----------->GT1 <---------ATHB12  --------->MYB59  <---------TOE2(3) ---------ANAC58        ----------->GT1--------->YAB1<---------AHL20(2)     <---------YAB1       ----   tgacttgttgaataaaaacgcacaaattggaaaattttcattaatcatcactgttttaatttaggtctttaatttattaagatttaggattaatagagag  5183700                                                                        --------->DEAR3(1)                                                                       --------->RAP2.3(1)                                                                     <---------RRTF1(2)                                                                     <---------RAP2.3(2)                                                                     <---------RAP2.3(3)                                                                     <---------RRTF1(3)                                                                     --------->ANAC46                                                                   <-----------GT1                                                               --------->AHL20(1)                                                               <---------ARR11(3)                                        --------->LBD16   <------MYB46(1)    <---------TOE2(3)                                        <---------ZAT18   <------MYB83<---------RAP2.3(1)                                        ------------>CBF <---------AtMYB61<------NtERF2     <------------CBF                  --------->ANAC46<-------GAMYB<---------At5g28300    <---------ARR14(2)                <---------LBD16 --------->ALFIN1<---------RRTF1(1)          <<<   <------ZmHOX2a(1)         ---------->DOF2  *TSS    <-----------RAV1(1)------>NtERF2    ------>ZmHOX2a(2) ------>DOF2     <---------ZAT6    <----------DOF2  <---------ANAC46<---------LBD16 <----------DOF2   aaagaggaattggttttaagtgttaagagagaaaagcctttgcgcaatctcactgtgtgttggtatatattacggcgccaaggtttctttgatcgatttc  5183800          --------->LBD16         --------->HSFC1(1)         <---------HSFB2a(2)                                                                    -----         <---------HSFC1(1)                                                                   -------         --------->HSFB2a(2)                                                                 ------>ZmHOX2a(1)        <---------LBD16        <---------MYB52(1)                                   =================    <<<<<<<<<TBF1            <---------ANAC58                                       ------>ZmHOX2a(2)   ==========================================MADS_MADS                              ================HOX2a_HOX2a   <---------------AGL15     <---------ANAC58                                      ==================   --------------->AGL15     <---------------AGL15                                 <------ZmHOX2a(2)<  <-----------------AGL1     --------------->AGL15                                 =================HOX2a_HOX2a <<<<<<<<<TBF1              <-----------------AGL2     ------>ZmHOX2a(2)         <---------GLK1(1)  - <<<<<<TBF1       --------->ARR11(3)     <----------DOF2              --------->MYB52(1) <---------ALFIN1   ttcttcttcttctggaaaattatctcgttttccgtttttagttctttgagtttgggatcgttcaatggagcccaacgtagtggagatcgctactcctcct  5183900                             ---------->DOF2                            --------->MYB46(3)    <---------WOX13(1)           <---------HSFB2a(2)  ----------->GT1 ------>MYB46(1)           --------->HSFB2a(2) <---------TOE2(3)------>MYB83        <---------ANAC58  ------>NtERF2       --------->TOE2(3)                       --------->At5g28300        <---------ANAC58  ----------->RAV1(1) <---------MYB59                   <---------HSFB2a(2) ->ZmHOX2a(1)         --------->ANAC58        <---------MYB46(2)                --------->HSFB2a(2) ---->RAV1(2)         --------->ANAC46       --------->ANAC55(2)        --------->AHL20(2) ==HOX2a_HOX2a        --------->ANAC58     <-----------GT1              <---------AHL20(2) ==HOX2a_HOX2a <---------ARR14(2)        <---------DAG2              <---------ARR14(2)           <-- ---------At4g35610  --------->SPL7      <----------DOF2             --------->ARR14(2)      <------- ----->NtERF2  --------->ARR14(2)     <-----------GT1             ------>ZmHOX2a(2)  ----------->GT1   gccgcttcttgctcgagaattcgaacgccaacaaaggttattactttacctaattgaattgaatttgatcggattttaatctctagagggtaattctgtt  5184000                                                                        --------->YAB1                           ------>MYB46(1)                             --------->ICU4                           ------>MYB83                                <---------YAB1                         <---------MYB46(2)                       <---------ANAC58                         --------->TOE2(3)                        <---------ANAC46                         <---------MYB59                    <---------YAB1                        --------->ANAC55(2)               <---------ANAC58      <---------ANAC46<-----------GT1                     <---------ANAC58  --------->WOX13(1)<------ ---------GT1         <<<<<<<<<GT-1    <---------YAB1     <---------ANAC46<---------YAB1   <---------ARR11(3) --YAB1       <-----------GT1     ----------->GT1 <---------LBD16 <---------ANAC58         --------->ARR11(3)   taactgtgtcttaaattcactgatttacctaatttgaagttaaaattgattttggggattgtgtgattgtgtgatcatcaatctgggttttgaggtcttt  5184100                                                 <---------WOX13(1)    <---------AHL20(2)       <---------MYB52(1)--------->ATHB12    --------->ATHB12      <---------YAB1      <---------YAB1   --------->AHL20(2)   <---------ICU4    <---------ANAC46                                 <---------AHL20(2)   <---------AHL20(2)  <---------YAB1     ==========================bZIP_DOF              <---------AHL20(2)  <---------WOX13(1)   --------->ICU4     <---------TGA1a        <-----------RAV1(1)<---------YAB1 ----DOF2            --------->YAB1  <---------At4g35610 <----------DOF2        <----------DOF2     -   gttgatttattggttttagtgagtcatcatcgttgattttgctgatgtgtgattggggtcttttgttttgttggctcacttgcattatgttttttatttg  5184200  Previous    Next  AGI:  At3g15355.1    Description:  PFU1/UBC25 (UBIQUITIN-CONJUGATING ENZYME 25); small conjugating protein ligase. similar to PFU3/UBC26 (UBIQUITIN-CONJUGATING ENZYME 26), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G53020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69746.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 5183746    to: 5186936    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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