Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------At4g35610                                                                                     --------->At4g35610                                                                                   <-----------RAV1(2)                                                                                  <---------At4g35610                                                                           ------->GAMYB                                                                          --------->MYB46(3)                                                                        ====================RAV                                                                        ----------->RAV1(1)    <-----                                                                        =======================RAV                                                                   =================RAV        <-----                                                                   ----------->RAV1(2)         <-----                                                              ----------->HVH21   --------->ZAT2                                                            <---------AtLEC2      --------->At4g35610                                                            ----------->RAV1(2)   <---------ZAT2<----             --------->ICU4                                 <---------ANAC58     ----------->RAV1(1)        ----------->GT1             --------->ZAT2          <---------ANAC58<-----------HVH21  <-----       --------->DAG2               --------->At4g35610     ========================RAV    <---------      ---------->DOF2            ----------->RAV1(2)      --------->WRKY38(1)   <-----------RAV1(2) - ---------DOF2               --------->YAB1        ---------->DOF2 ==========================RAV-----   actttgtataaagtaatactgaagggaagaatcatacctgctgcattgttgacaaaagcgttgcctgacccctgcaacagtcgcagcagatgcctttgca  5141000                                                                --------->ETT(2)                                                                <---------ETT(2)                                                              ------>MYB46(1)                                                              ------>MYB83                                                              --------->MYB52(1)                                                          ------->TEIL ----ANAC58                                             --------->ZAT18 ----ANAC58                     <---------ANAC58        <---------ZAT18 ----ANAC46                     <---------ANAC58        <---------ZAT14 -----------AtSPL3     --------->At5g28300              --------->ZAT14 ----AtLEC2           ----------->GT1              <---------At5g28300 -DOF2              <---------LBD16               <-----------GT1  --------->ZAT2 ------>TEIL        --------->At4g35610           --------->MYB52(1)                          <------ ---------->AtSPL8  <---------At4g35610<------NtERF2--------->ZAT6 ----------->RAV1(2)      <--------   tgtacttcacatactctgtgtctgcggtaatactgcttggcctcagtcaaattaacagtgcacctatcgacctggcacagtcgcgatggaacacggtcag  5141100                                                                        --------->ANAC46                                                                        --------->ANAC58                                                           ------>ZmHOX2a(1)   <------ZmHOX2a(1)                                    ------>ZmHOX2a(1) ---WRKY12            <---------ALFIN1             <---------ALFIN1     --------->AtLEC2          <-- ---HVH21      <----------DOF2   <----------DOF2 ------>ZmHOX2a(1)      --------->ANAC58 <<<<<<<<<TBF1   tgctaggacctctaactctttccatcaccttcttccttttgtcttcgtctcctccatcctcctcttctccatccatgccattctccatttcttcttcaac  5141200                                      <-------GAMYB                                     <---------ANAC46                                   --------->LBD16                                   ------>NtERF2                                  --------->ANAC46                                  --------->LBD16                                  <---------DEAR3(1)                                 <---------LBD16                                ------->GAMYB                                                       <                              -------->P                                                           <-          <---------ZAT14  <---------MYB52(2)                                                   <----          --------->ZAT14 --------->ANAC58                               <----------DOF2      <------   <------MYB83           --------->ANAC58                      --------->HSFB2a(2)    <---------LBD16   <------MYB46(1)        --------->ANAC55(2)                   <---------HSFB2a(2)    --------->TOE1(2) <--------P               --------->ANAC46                <---------------AGL15       <---------ANAC58 -------TOE2(3)      <----------DOF2<------NtERF2----------->HVH21  ---------->DOF2   <---------ANAC58   aaggttggagactgtagccttgtctttcaagtaaccccggcgttgtgttctctgaccctccattttctggtaaagctttaagttgtattcgtgggaagat  5141300                   --------->ANAC58      <---------GLK1(1)                       <---------SPL7      --------->GLK1(1)         <------ZmHOX2a(1)                                              <----- ---------MYB46(3) --------->ANAC58        <---------ANAC46                        <------ZmHOX2a(1) --------AtMYB61 <------ZmHOX2a(1)       --------->ALFIN1------->TEIL        ---------->DOF2 <------- -----YAB1     --------->MYB59<---------TOE2(3)--------->ALFIN1        ----------->GT1   --------->DAG2 ---At4g35610<--------P --------->ICU4 <----------DOF2 *TSS           ----------->GT1   ---------->DOF2   gatggtggatttctggttaggaagcaatgttgaaggatgggctttgggggtatggaatgaatgttttttgaagtgtttaaaaagaggaagaaaagtcggg  5141400                                                                    <---------------AGL15                                                  <---------ANAC55(1)                                                  <---------ANAC55(2)                                                  --------->ANAC55(2)                                                  <---------ANAC46  --------->LBD16                                                  <---------ANAC58  --------------->AGL15                                             --------->ATHB12      ----------------->AGL3                                             <---------ICU4    <---------ANAC58                                            --------->ICU4     <---------ANAC58     <---------ALFIN1                       <---------YAB1 <---------ANAC58   >>>>>>>>>>>>>>>>>LFY              <---------ICU4    <---------bZIP60(2)          --------->AHL20(2)  <---------PCF5                     <---------------AtSPL8<---------ANAC58         <---------AHL20(2) -NtERF2       ------>ZmHOX2a(1)    --------->ICU4<---------ANAC58 ----------------->AGL2 --LBD16      --------------------->WRI1 <-------TEIL  <---------ANAC46  ---------->DOF2   agatggaccactgtgtccttgtatgcttctctggtggaataagtacatgattacgtgatgtgcttgcttccccaaaaaagaagaaattaaaaatggagag  5141500                                                                                       <---------AHL20(2)                                    <---------ANAC58                <---------AtMYB61  --------->AHL20(2)                                    <---------ANAC46        <---------ANAC58          --------->ICU4                                    <---------ANAC58        <---------ANAC58          <---------ATHB12                        ----------->GT1  <-----------GT1    <---------ANAC46<---------At4g35610         --------->ATHB12         --------->ARR11(3)     <----------DOF2    ----------->RAV1(2)   tataggtcaatagattggaattacacaagtgaaaaatttcttgtaactatttcataggcctttcgtggttttggtttcttctgatgcaattaatagttga  5141600                           --------->LBD16                          <---------ANAC46                          <---------ANAC58                                                <---------YAB1           ----------->GT1<---------ANAC58     <---------AHL20(2)                         <---------TOE2(3)         --------->At4g35610   <---------ZAT14<---------AHL20(2)                         <-----------GT1         <---------At4g35610  <----------DOF2 --------->AHL20(2)               <----------DOF2  --------->ATHB12       <---------LBD16     --------->YAB1 <---------YAB1    <---------DAG2   tacaagattggagctgtatattgtacttccgggtttactgttttgaattttaatttgaatttcttattcaaattggggacccttttgtttttaacattga  5141700                                                                                 <---------ICU4                       --------->TOE2(3)                                        <---------YAB1                       --------->TOE1(3)                                        --------->ICU4                       <---------DAG2                                         --------->YAB1               <---------TOE1(3)                                    --------->At4g35610               <---------TOE2(3)            --------->ETT(2)        --------->ZAT2            --------->ICU4                  <---------ETT(2)       --------->ARR11(3)<-----------GT1     <---------HSFB2a(2)                  --------->ZAT14 --------->ANAC46   <---------YAB1  <-------     --------->HSFB2a(2)        <---------ICU4         --------->ZAT14      --------->ARR11(3)  ------>ZmHOX2a(1)  ------->TEIL   <---------ZAT18    <---------ZAT14      <---------ARR11(3)   tgtccttctaggtaattaaggtgaaccttattgatcagtgcaactgtagacatatagtacagggaagaagagctggaatatcataatttacccatggtct  5141800                  <---------ARR11(3)                  --------->ARR11(3)                 <---------CCA1(2)                <---------AHL20(1)                <---------AHL20(2)                <---------ARR11(3)                --------->AHL20(1)                --------->ARR11(3)                          ------>ZmHOX2a(1)             --------->AHL20(2)                        --------->bZIP60(1)             --------->YAB1                            <---------bZIP60(1)                          -        <----------DOF2<---------HSFB2a(2)    <---------AHL20(2)                                  ---        <---------DAG2 <---------HSFC1(1)    --------->AHL20(2)                                   ---  --------->At4g35610  --------->HSFB2a(2)------>ZmHOX2a(1) <----------DOF2                 ------>ZmHOX2a(1)  <---------At4g35610  --------->HSFC1(1)<---------MYB59   --------->TOE2(3)      <---------GLK1(1) < --ARR11(3) <---------YAB1        ---------->DOF2 ----------->GT1   <---------REM1(1) ------>ZmHOX2a(1)   tctcatctaactttataatatatctctagaaacagacaaaggtcctaataaatggtgacatcctttgtcgatgtagactattggattcctcttcctgcaa  5141900  Previous    Next  AGI:  At3g15270.1    Description:  SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5); DNA binding / transcription factor. Identical to Squamosa promoter-binding-like protein 5 (SPL5) [Arabidopsis Thaliana] (GB:Q9S758;GB:Q9SMW8); similar to SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4), DNA binding [Arabidopsis thaliana] (TAIR:AT1G53160.2); similar to SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G53160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39310.1); contains InterPro domain Squamosa promoter-binding protein (InterPro:IPR017238); contains InterPro domain Transcription factor, SBP-box; Range:  from: 5140372    to: 5141355    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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