Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->ANAC46                           <-----------GT1 --------TaMYB80      ----------->GT1 --->LBD16        --------->GLK1(2) >NtERF2          <-----------ARR10 -NtERF2          --------->ARR14(2)                             ------->GAMYB -->DEAR3(1)      <---------ARR14(2)                            --------->MYB46(3) -->RAP2.6(2)    <---------GLK1(2)                       ----------->GT1                            - --LBD16      --------->HSFB2a(2)                      <---------GLK1(2)    ---------->DOF2        <- ->RAP2.3(1)  <---------HSFB2a(2)         <---------STY1(2)   <-----------GT1 ----------->GT1    ----   attttcccaagaacatcgagaatctcgttatacaacatcgagctagatagatgaacagattgtttaacgaccaattgagaaagtatataagctggtttcc  5118700                                                                    <---------ARR14(2)                                  <---------ARR11(3)                --------->ARR14(2)<---------At4g35610                                  --------->ARR11(3)    <---------ALFIN1        <----------DOF2           <---------YAB1       --------->ANAC58       --------->LBD16         <---------ICU4    <------ZmHOX2a(2)    --------->HSFB2a(2)          --------->ANAC58    <----------DOF2   --------->AGP1        <---------HSFB2a(2)         <---------LBD16--------->GLK1(2) --------->At4g35610 -------->YAB1     <---------ALFIN1       <---------MYB52(1)    --------->HSFB2a(2) <-----------RAV1(2) --------ATHB12   --------->MYB46(3)     <-------GAMYB--------->ANAC58  --------->LBD16             - ----->WOX13(1) <-----------GT1 --------->ANAC58     --------->ANAC46   --------->At4g35610      <---   aatcagatcgattccgattaaccacttctaaaacaagctcttcggttaagtctatcccgcacttatcgagaatccgcttaatcttttcaggtgaacttcc  5118800                                                                                  --------->ZAT2                                                                                  <---------GLK1(1)                                                     <---------MYB46(3)           --------->At4g35610                                                    <------NtERF2                 <---------ZAT2           <---------YAB1                        ---------->ID1                   <---------At4g35610       <----------DOF2                       <----------DOF2                      --------->GLK1(1)       <---------DAG2                  <---------ANAC58                        <------NtERF2 --------->ALFIN1     ------->TEIL     <---------ANAC46                      <---------ANAC46 -------->At5g28300<---------YAB1      <---------ANAC58    ------->TEIL      <---------LBD16 ------LBD16--------->YAB1          <---------WOX13(1)<-------GAMYB          --------->ETT(1)      --   acggtgatgctttatgatgttatgaacatcaagagcagattgcttgtctttgtcgtcgttgaatctatttggaaatttgtcgggagctccaagagaatga  5118900                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                   --                        <---------LBD16                      <---------LBD16                       --                  --------->ALFIN1                          <---------LBD16                       <--               --------->DAG2                            <-----------HVH21                        ---        ------->TEIL   ----------->RAV1(2)            <---------ANAC58                           ----      --------->ZAT14--------->ARR14(2)            --------->ARR14(1)                        <-------      <---------ZAT14<---------ARR14(2)          --------->ATHB12  <------ZmHOX2a(1)         --------    <---------------AtSPL8          --------->ARR11(3)<---------ANAC58     --------->ANAC46 --------- -------->DOF2---------->DOF2   ----------->GT1 <---------YAB1    ----------->GT1           <--------   agaaagtgtgtacccagaaagtggaacctggagagagtgatattgttcttatgattcggtgtctcgggaggaaaaacacggcgaaaatcgaccaatgatg  5119000         ------>NtERF2         <------NtERF2         --------->LBD16        --------->RRTF1(3)        --------->DEAR3(1)       <------NtERF2       --------->ATERF1(1)       --------->ERF1      ------>NtERF2      --------->ABI4(2)      <---------ATERF1(1)      <---------RAP2.6(1)      <---------ERF1      <---------RAP2.3(1)      <---------DEAR4(2)     <---------RAP2.3(2)     --------->DEAR3(1)     <---------DEAR3(1)    --------->RRTF1(1)    --------->RAP2.3(1)    --------->ERF1    --------->RAP2.6(1)    --------->ATERF1(1)   <---------RAP2.3(1)   <---------ATERF1(1)   --------->LBD16  <---------DEAR3(1) ------>ZmHOX2a(2) <---------LBD16                                                                             -------- -------->ARR14(1)                                                                           -------- -------->CCA1(2)                                                                   --------->ARR14(2) ------ZmHOX2a(2)                                                                   <---------ARR14(2) ------->AGP1                                                                       <---------ARR14(3) --------ARR14(2)    <----------DOF2                                                --------->AGP1 ------->ARR14(2)--------->ZAT14                                                    --------->ARR14(3) ------->ARR11(3)<---------ZAT18                                                    --------->ARR11(3) -------GLK1(1)  <---------ZAT14                                                    <-----------ARR10 ------>GLK1(1)  --------->ZAT18                                                    <---------ARR11(3) ------->ARR10---------->DOF2                                                      --------->RVE1(1) --ICU4--------->ORA47(2)             --------->ARR11(3)                        ---------->DOF2     - ->YAB1--------->RAP2.3(1)            <---------ARR11(3)               <---------ZAT14     --------->LBD16 >ICU4<---------RRTF1(1)   <---------At4g35610        <-----------GT1  --------->ZAT14------>ZmHOX2a(2) -ATHB12--------->RAP2.3(2)--------->At4g35610       <-----------GT1 --------->ANAC46<------ZmHOX2a(2)   agatccggcgccgcgatagagcactttgtagctgaaacaagatttcaattttgtttttccctcccatcttcactaaactctctaaagatcttccgaagca  5119100                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                              <------                                                                                              <------                                         <---------ARR11(1)              <---------AHL20(2)   -------                                         <---------ARR11(3)            <---------RVE1(1)     <-------                                        <---------CCA1(2)             <---------ARR14(2)     --------                              --------->YAB1                          --------->ARR14(2)    <--------                             ----------->GT1<----------DOF2           <---------GLK1(2)     ---------                             <---------ATHB12   <-----------GT1     --------->LBD16        --------->YAB1     <---------ANAC55(2) ------------>CBF--------->ARR11(3)       <---------LBD16        <---------WOX13(1) ->ANAC58             <------------CBF--------->ANAC55(2)       <-----------GT1    ----------->GT1 ->ANAC58            <---------ICU4   <---------ANAC55(2)     --------->AHL20(2)  --------->MYB59---- ---------->GT1----------->RAV1(1)   <-------TEIL         --------->AHL20(2)      <---------TOE2(3)   aaacgttacatatacaacaacaaaaattgcaatgaaaaatacatatctttttaccaaaaatgaattaaaccggatttttttagtaaggttgaatgatcat  5119200 ------ICU4 ----->ATHB12 -----YAB1 ---->ICU4 ---ICU4 --HAHB4 -->YAB1                              --------->AHL20(2)                                           -- --YAB1                       <---------WOX13(1)                                                  <-- ->ICU4                      <------------CBF                                                     --- -ARR11(3)                  --------->ATHB12     --------->YAB1                                 ----- >ARR11(3)       --------->ATHB51     <---------AHL20(2)                                      ------- ----->ATHB51    --------->ATHB12    --------->YAB1    --------------->AGL15         <---------ANAC46   tatttgtttaagaacagcattatttgttagtgattgctattaaaatacgaatgataacaaattttagtatatgaaatttcattcgtttcggacaaaaaaa  5119300                                                     ---------->DOF2      <------------CBF                        <------MYB83    <---------YAB1                            <------MYB46(1)    <---------AHL20(2)               --------->ARR11(3)  <---------ICU4          <---------YAB1     --------->MYB59 --------->ICU4      <---------AHL20(2)      --------->MYB46(2) ------->AHL20(2)   --------->AHL20(2)       <---------------AtSPL3 -------AHL20(2)    <---------AHL20(1)       --------->MYB111(1) ------>AHL20(2)    <---------AHL20(2)    --------->ATHB12    <---------ANAC58 ---->YAB1          --------->AHL20(1) <------------CBF       <---------ANAC58 -->AHL20(2) ---------->DOF2<------------CBF <---------MYB46(3)         --------->MYB52(1)       ----   ataatttttattgaataaagaatttatttcgattgaagtgatattgtttggtaccgaaagttttgcttacaaacaaacagaggttttgaatatagagaca  5119400                                                                                   <---------AHL20(2)                                                                                  <---------ARR11(3)                                                                                  <---------AHL20(1)                                                                                  --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                  --------->ARR11(3)                                                                                  --------->AHL20(1)                                                                               --------->AHL20(2)                                                                      --------->ANAC58                                                                      ----------->GT1  --------->AHL20(2)                                                       <---------ARR14(2)    --------->ARR11(3)                                     <---------TOE2(3) <---------ARR11(3)    <---------ARR11(3)                               --------->ICU4          <-----------ARR10    --------->YAB1        ---                               <---------YAB1          --------->ARR11(3)  ----------->GT1  <--------   --------->DAG2            --------->YAB1            --------->ARR14(2)---------->DOF2   --------->AHL20(2)  ---------->DOF2            <---------ICU4 <---------AHL20(2)        --------->ANAC58 <---------AHL20(2) ----->At4g35610          --------->YAB1    --------->AHL20(2)        <---------ANAC55(2)  <---------AHL20(2)   gcataaaagtgaagctagcttaagtctataatcatgtttaagaaaattaaacagtagtatcttcttaatgaaacgtaaagataatatatttaaataaatg  5119500                             <-----------RAV1(1)                     ----------->RAV1(2)                     --------->ZAT2                     ====================RAV                     <---------ZAT2   --------->ANAC58                     <---------At4g35610                         --------->REM1(2)     ---------->DOF2                     --------->At4g35610   --------->ANAC58   <---------ANAC46     <---------ANAC46     <---------AHL20(2)  <---------GLK1(2) --------->ANAC58   <---------ANAC58--------->At4g35610 ---->TEIL     --------->GLK1(1)      --------->ANAC58        <---------ANAC58<---------At4g35610 --- -AHL20(2)     <---------GLK1(1)      --------->ANAC46 <---------YAB1        ------->TEIL   <--------   aatctttttattttctgatatccagctgattctgtggcccaagaaacccaatccattatccatggcgtgaagacatatgtagctgtcgtaaaagaataaa  5119600  Previous    Next  AGI:  At3g15200.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G15010.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62355.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5117496    to: 5119067    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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