Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------ARR14(2)                                                                          --------->ARR14(2)                                                                          --------->ARR11(3)                                                                 --------->TOE2(3)                                                                 --------->TOE1(3)                                                                ----------->GT1                                                               <---------TOE2(3)                                                   <---------ANAC46       --------->GLK1(2)                                                   <---------ANAC58       <---------ARR11(3)                       --------->YAB1              <---------ANAC58  ---------->DOF2 ------DOF2    <-----------GT1        <---------AHL20(2)       <---------YAB1 --DOF2   ---------->ID1             --------->AHL20(2)      --------->YAB1 <---------ANAC46   ttcttcatatttgtttttttctctctaataagttttggattaaatgtactaatgcgtttagaattatcgttaaaagtatcttgtaaacagacaaaatcca  5109500                                                                                 --------->LBD16                                                                                --------->LBD16                                                                               ----------->RAV1(2)                                                                               <---------LBD16                                                                           --------->ARR14(2)       -                                                                     <---------ANAC46               -                       ---------->DOF2         <-----------GT1     <---------TGA2(2)                -                   --------->ARR11(3)        <---------AHL20(2)   ----------->HVH21                --                   <---------ARR11(3)----------->GT1              ----------->TGA1              -----               ---------->DOF2      --------->DAG2         <----------DOF2 <---------ARR14(2)   -----               --------->MYB52(1)  ---------->DOF2   <----------DOF2 <---------bZIP60(2)    <--------            --------->At4g35610 --------->YAB1<-----------GT1   <---------At4g35610     <-----------GT1   agtagtatccaataagctaaaggtctaaagtgtttcataaagttaaatttatcgtctttttctttaggctgacgtagaatcccctgaatttcacagtcac  5109600                                                                                  ------>ZmHOX2a(1)                                                                               <<<<<<<<<ARR1                                                                               <<<<<<<<<ARR2                                                                               <<<<<<<<<ARR1                                                <------ZmHOX2a(2)              <<<<<<<<<ARR2                                               --------->ARR11(3)         --------->YAB1                                       <---------YAB1                     <-----------GT1       <---------ANAC58               <---------ARR11(3)                 <---------YAB1       <---------ANAC58               --------->ARR11(3)               <---------ICU4 -------->ANAC46                   --------->AHL20(2)                  --------->ATHB51 -------->ANAC58                   --------->YAB1------>ZmHOX2a(2)     -------->ATHB1 -------->ANAC58                  <---------ATHB12 ------>ZmHOX2a(1)  <---------YAB1 ----->TEIL                <---------ANAC58    <---------ARR14(2)     <---------AHL20(2)         ---- ---->ANAC58               <---------ANAC46    --------->ARR14(2)     --------->AHL20(1)         <--- ---->ANAC58               <---------ANAC58    <---------ARR11(3)     --------->AHL20(2)         ---- ---HVH21      ---------->DOF2    <---------ATHB51--------->TOE2(3)   --------->ICU4 <---------REM1(2)   gcacgcattgcatgctcaaaagacaaatgtcgtccaataatatcatatagatcctaaacaagttttagcaaaattattacaatcctatacacacacatat  5109700                                                                                          ===========                                                                                          <------ZmHOX2a(1)                                                                                       <-----------RAV1(2)                                                                                    <XXXXXXXXXXXXXXXX                                                                                  <---------HSFB2a(2)                                                                                  --------->HSFB2a(2)              <---------ANAC46                            <-----------HVH21   <---------ANAC58       <---------ANAC46         --------->TOE2(3)        <---------ZAT6       <---------ANAC58    <---------MYB52(1)   --------->ANAC46           <---------STY1(2)         <---------ANAC46 ----->AHL20(1)       <---------ZAT18               --------->STY1(2)      <---------MYB52(1) ------ARR11(3)   --------------->AtSPL8       --------->ZAT6             <---------At4g35610 ----->ARR11(3)   <---------------AtSPL8     <-----------HVH21            --------->At4g35610   atattcgttttgtgtgatgtattgtacacatcaacatcaactctatctgtcactagctactgtcaaatatcacatcagttgcttgtagaacaggagaaac  5109800                <------ZmHOX2a(1)            ---------->DOF2                                <---------------AGL15       <---------AHL20(2)                                  --------------->AGL15       --------->AHL20(2)                                 <-----------------AGL3     <---------YAB1                                       <-----------------AGL1    --------->TOE2(3)            ------>ZmHOX2a(1)        <-----------------AGL2  <------ZmHOX2a(2)          <-----------GT1        <---------ARR11(3)  =====================HOX2a_HOX2a                 <---------CCA1(2) <---------ARR11(3)      <---------AHL20(2)      <----------DOF2 --------->ARR11(3)     <---------AHL20(2)       <---------DAG2        --------->ZAT6     *TSS ========HOX2a_HOX2a<----------DOF2   <----------DOF2     <-----------------AG    ----------->GT1<--- XXXXMIR413 --------->MYB52(1)<-----------GT1   --------->TOE2(3)     --------->GLK1(1)<---------YAB1   acagatcattaaaataaaggaccttttttattttcctcttcttttctcttcctttatctttcaacatttgggaactctagggttttgttatttttagagc  5109900                                            --------->ATERF1(1)                                         <---------ANAC46                                        <------MYB83                                   <---------TOE1(3)                                        <---------MYB46(3)                             --------->MYB59                                        <------MYB46(1)                                <---------TOE2(3)                                       --------->ALFIN1                       --------->O2           <---------RAP2.6(3)         --------->MYB55(2)                     <---------O2           ------>NtERF2               <---------MYB46(3)                     --------->TGA1a           <<<<<<<<<<<<<<<<<LFY       <---------MYB52(1)                      <---------TGA1a          --------->DEAR3(1)          <--------P     --------->ARR14(2)       --------->ZAT2          <---------ETT(1)            --------->ALFIN1           ------->TEIL ----------->RAV1(2)          --------->ATERF1(2)         ==================================================MYC_MYB          --------->RAP2.3(3)       <---------MYB46(3)--------->CCA1(2)       <---------ZAT2         --------->DEAR3(2)      --------->MYB52(1)  <---------ARR11(3)      ------>NtERF2 -------DOF2       ------->TEIL  <-----------GT1   ----------->ARR10  <---------MYB52(1)           <-   tttcttcttgtgccgacaatggatgttgatgtgtttaacggttgggggaggccaagatttgaagatgaatcccttatgccacctgggtttaggtttcatc  5110000                                                                  <------NtERF2                                                                 <---------RAP2.6(3)                                                                 ------>NtERF2                                                                >>>>>>>>>AtERF-3                                                                --------->RAP2.6(2)                                                                --------->RAP2.3(2)                                                                --------->ATERF1(2)                                                                >>>>>>>>>AtERF-4                                              --------->ZAT6    --------->RRTF1(3)                                        <-------TEIL            --------->RAP2.3(3)                                       --------->ARR11(3)       --------->DEAR3(1)                                     --------->HSFC1(2)         <---------ATERF1(2)                                     <---------HSFC1(2)         <---------bZIP60(1)                                     --------->HSFB2a(1)       --------->RAP2.3(1) ==================          --------->At4g35610        <---------HSFB2a(1)       --------->ORA47(2)  ------>ZmHOX2a(2)          <---------At4g35610 ------>ZmHOX2a(1)    XXXXXXXXXXXXXXXXXXXX>MIR413   <---------ARR11(3) --------At4g35610            XXXXXXXXXXXXXXXXXXXX>MIR825      --------->ERF1    --------->ARR11(3)   caactgatgaagagctgatcacttactatctcctcaagaaggttcttgactctaatttctcttgtgccgccatttctcaagttgatctcaacaagtctga  5110100                       --------->ANAC46                 --------->ANAC58                 --------->ANAC58          <---------DAG2               <--------P                ------>MYB83            --------->LBD16              ------>MYB46(1)            ------>ZmHOX2a(1)          --------->MYB46(3)      <---------HSFB2a(1)              ------->GAMYB      <---------HSFC1(2)             --------->ANAC58          --------->ANAC46      --------->HSFB2a(1)            --------->ANAC58          --------->ANAC58      --------->HSFC1(2)          --------->WRKY18(1)          --------->ANAC58      --------->ZAT2--------->ZAT18<---------WRKY12         <---------ZAT18      <---------At4g35610       --------->ANAC58    <-----------GT1                                <-      --------->At4g35610--------->ZAT14<---------ALFIN1    --------->ZAT18                <---------ICU4      <---------ZAT2<---------ZAT18<---------WRKY38(1)   <------ZmHOX2a(1)              --------->YAB1 ==================HOX2a_HOX2a  --------->ANAC58  <-----------HVH21     <----------DOF2<---------YAB1   gccttgggagcttcctggtaagcccacttaactcaagtcaacccaccttctgtttcacaggatgcactcaaaaacttttacaaaacttgataataagtcc  5110200                     <-----------TGA1                                                          <-----             <---------ANAC58                                                     --------->ARR14(2)             <---------ANAC58                                                    <---------CCA1(2)<--      <---------ARR11(3)                                                    <-----------GT1 ---------      <---------GLK1(2)                                                 <---------YAB1   --------->GLK1(2)      --------->ARR11(3)      --------->TOE2(3)                  --------------------->WRI1 <-------- --------CCA1(2)    --------->YAB1   <-------TEIL                ------>ZmHOX2a(1)<---------ARR14(2)   catctctagatttttgcttaaatcgtcataaaccctagtttcatcaaggccaacttattagactttcctctgttcttattgccatatccaaattctagga  5110300                                                                                         <----------DOF2                                                                                     <-----------GT1         --------->YAB1                                                             <---------AHL20(2) -ZmHOX2a(1)                                   --------->CCA1(2)                    --------->AHL20(2) --------DOF2                             --------->YAB1                        --------->AHL20(2) >HSFB2a(2)                          <---------REM1(1)                          <---------AHL20(2) -HSFB2a(2)--------->ICU4           <---------TOE2(3)                         <----------DOF2--------   ctttatttctgtgataatgtgctagatgagtagatgttaatgtagcatgatataggcttagtggagacactgttagaactctttaattaaactttcatta  5110400  Previous    Next  AGI:  At3g15170.1    Description:  CUC1 (CUP-SHAPED COTYLEDON1); transcription factor. Identical to Protein CUP-SHAPED COTYLEDON 1 (CUC1) [Arabidopsis Thaliana] (GB:Q9FRV4;GB:Q9LIL8); similar to CUC2 (CUP-SHAPED COTYLEDON 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G53950.1); similar to NAM [Petunia x hybrida] (GB:CAA63101.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) Range:  from: 5109890    to: 5111454    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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