Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <------ZmHOX2a(1)                                               <---------ZAT2                              --------->At4g35610                                               --------->ZAT2                              <---------At4g35610                                           --------->ANAC46    ---------->DOF2             --------->LBD16                                          --------->SPL7  <---------ATHB12          --------->LBD16                                          <---------LBD16------>MYB83        --------->AHL20(2)                                         --------->MYB52(1)   <---------ATHB12    <---------LBD16                                       --------->YAB1    ------>MYB46(1)     <---------AHL20(2)                                     --------->ANAC58   --------->WOX13(1)  <---------AHL20(2)                                     --------->ANAC58 --------->MYB46(3)    --------->AHL20(2)   gcatagttgattcaaatttcgcatcacttgttttcgaacaagcatacggagcaggaaccaatcaataaagaaatggaatttaattccgcattccgctgta  5101400                                                            <---------ANAC58                                                            <---------ANAC46                                                            <---------ANAC58                                                          --------->ALFIN1                                                         --------->LBD16                                                         <---------LBD16                                                        <---------ANAC58                                                        <---------ANAC58                                                    <----------DOF2                                                <---------ZAT18             ------->MYC3                                                --------->ZAT14             <-------MYC2                    <----------ID1              --------->ZAT18             <-------MYC3              ---------->DOF2                   <---------ZAT14        --------->ANAC58           --------->AHL20(2)             --------->TOE2(3)<---------MYB46(3)        <---------ALFIN1           <---------AHL20(2)          <-----------GT1  <---------ANAC46    ------->MYC2          --------->AHL20(2)   ---------->DOF2 <-----------GT1         --------->ANAC58           <--   gcaaaaactaaatttaaaaagaacgacgagtagcaaagtgtttacctttgtacactttccgtgggtgtaatacaagcacatgggtctccaccttgcattt  5101500                                           >>>>>>>>>TBF1                                         ------------------------>ANAC81                   --------->DAG2       >>>>>>>>>TBF1  >>>>>>>>>TBF1                  ---------->DOF2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              <----------ID1<------ZmHOX2a(1) >>>>>>>>>TBF1---------->DOF2             <-------TEIL            <---------DOF5.7(2)      >>>>>>>>>TBF1  >>>>>>>>>TBF1                     --------->CCA1(2)            --------->MYB52(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->ARR14(2)       ----------------->AGL1     >>>>>>>>>TBF1  >>>>>>>>>TBF1<-----------HVH21      <---------ARR14(2) ---------GT1<---------TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <------ZmHOX2a(1)     ---   tcacttgtttccattaacgaaaaagtagaaggagaagaagaagaagaagaagaagaagaagaaaagtcagagggagaaggagatggagatacagaatgcg  5101600                                           --------->LBD16                                          <---------ANAC58                                          <---------ANAC46                                          <---------ANAC58                                         <------NtERF2                                         <---------LBD16            ---------->DOF2                                       --------->ALFIN1          <---------ANAC55(2)                                      <-------MYC3               --------->ANAC58                                      ------->MYC3               --------->ANAC55(1)                                     --------->O2                --------->ANAC55(2)                   <------MYB83--------->ANAC58                  --------->ANAC58                 ---                   <------MYB46(1)   <---------TGA1a             --------->ANAC46             -------                  --------->MYB46(2) ==========================================bZIP_DOF --------->ANAC46                  --------->MYB59    <---------O2               <---------LBD16         --------->ANAC58                 <---------MYB55(1)  --------->TGA1a        <---------GLK1(1)           --------->ANAC58          --------->ATHB12     --------->ANAC58             --------->GLK1(1)        <---------WRKY38(1)         <---------YAB1      ==================bZIP_DOF<---------LBD16           <---------HSFB2a(2)        ------->MYC3         ---------->DOF2<------NtERF2--------->LBD16         --------->HSFB2a(2)        <-------MYC3      --------->At4g35610         --------->GLK1(2)      <---------GLK1(2)------- -------->ARR10 <---------MYB52(1) --------->MYB52(1)<---------ARR14(2) <------ZmHOX2a(1)------->GAMYB   aagagttgcacatgattcgtttggtatgagctaaagccaacgtggcgggataagagaaccgggtatcacggaaaggactgattctggacaacgaaaccct  5101700                                                                     --------->ZAT14                                                                 <---------HSFB2a(2)                                                                 --------->HSFB2a(2)                                                                <---------ANAC46                                                             <----------DOF2                                                        ------>ZmHOX2a(2)                ------>NtERF2                          <------ZmHOX2a(2)               --------->ANAC46                       <---------ARR11(3)               --------->ANAC58                       <---------ARR14(3)               --------->ANAC58                       <---------ARR14(2)                  --------->At4g35610               --------->RAP2.6(2)                    --------->ARR14(2)                  <---------At4g35610          <---------LBD16                             --------->ARR14(3)                 --------->ANAC58 ------->DOF2 --------->SPL7                          --------->ARR11(3)                 --------->ANAC58 -->TOE2(3)  ------>NtERF2             <---------YAB1 <-----------ARR10           <---------ZAT2    < -->TOE1(3)  <---------ATERF1(1)  <---------AtLEC2  ----------->ARR10<---------ZAT14    *TSS  -------   aaatgcagagaatgcggacgccattttcgtcgattagcatgaagattgaagatgaagatcttcctttcgagtacagggactgggaactgggaagctaaaa  5101800                                                                         --------->ANAC58                                                                   <---------CCA1(2)                                                               <-----------TBP                                                        --------->MYB52(1)                                                      <---------MYB59    --------->ANAC58                  ------------>CBF     <------------CBF ------>MYB83<-----------GT1   ------------>CBF <---------MYB52(1)              ----------------->AGL3 ------>MYB46(1)  --------->ANAC46         --- ----------DOF2   --------->MYB46(3)  --------->DAG2>>>>>>>>>MYB2--------->AHL20(2)   --------->MYB46(3) --->DOF2       <-----------GT1  ====================================================================   gcctttagtttgttttagtaaccaattcaaatcgaaccaaaaattgaatttgaaaaccaaactggatttatatccacacaaactcttaaccaatgccaaa  5101900                                     --------------->AtSPL8                                     --------------->AtSPL3                                     <---------------AtSPL8                                   --------->YAB1                                   -------->HAHB4                                   <---------ICU4                                  <---------ATHB51                                  <---------ATHB12                                  --------->ICU4                                ------>MYB46(1)                                ------>MYB83                     --------->ANAC58                               --------------->AGL15             --------->ANAC46                               <---------------AGL15  --------->GLK1(2)                              <-----------------AGL2<---------HSFB2a(1)                      <-------                              <---------MYB59       <---------HSFC1(2)             --------->WRKY38(1)                              ----------------->AGL3--------->HSFB2a(1)            --------->WRKY45     --------->AtLEC2         <-----------------AGL3--------->HSFC1(2)        <---------TOE2(3) ------>AtMYB61         --------->REM1(2)       ----------->GT1  --------->ANAC58<----------DOF2 ===============================================MADS_MADS<---------YAB1       <---------TOE1(3) <----   ccataccatgaaaaactaataaaccgagtagacctaataatggtactaaatcgaaaattctgactacaagaaatgaaattaagctttgactagcctcagg  5102000    --------->ANAC58                                <------ZmHOX2a(2)     --------->DAG2    --------->ANAC58                     --------->GLK1(2)               ---------->DOF2   ------->TEIL                          --------->ARR14(2)         ------>ZmHOX2a(1) ----RAV1(2)                            <---------GLK1(2)    <-----------GT1  ----------->GT1 --ZmHOX2a(1)                --------->At4g35610    =======================HOX2a_HOX2a              <   aaatgaacgtaaacttggcaaaaaaaacagcagttgaattcagaatcggaagagatcgactatttacatcctccataaagtggaaacaattggtatcaaa  5102100                      --------->SPL7                     ------>MYB46(1)                     ------>MYB83                     --------->MYB52(1)                    --------->MYB55(1)                    <---------SPL7           ----------->GT1                                      ---                   <---------MYB59       --------->DAG2                     <---------ZAT14       ---                  --------->ANAC46      ---------->DOF2                     --------->ZAT14  <-------          --------->AHL20(2)  <---------TOE2(3)                         --------->ATHB12  <---------LBD16 -----------GT1 <-----------GT1    ----------->GT1            --------->REM1(1)<---------At4g35610---   tttcacgtttgataaaatataccgaacggactaagaatagcaaaaagttgtgaaacatatggcttcaacttgtttcattgcagcgcttaaaacccggtcc  5102200                                                                                       <---------At4g35610                                                                                       --------->GLK1(1)                                                                                       <---------GLK1(1)                                                                                      <-----------ARR10                                                                                      ------->TEIL                                                                                      <---------ARR14(2)           ------>ZmHOX2a(2)         --------->ZAT14                                  --------->ARR14(2) ------>ANAC46                       <---------ZAT14                            ------->GAMYB ------>ANAC58           <---------ALFIN1       <---------ATHB12               --------->MYB46(3) ----HVH21--------->GLK1(1) <---------ARR11(3)--------->WOX13(1)            <---------WRKY12 ------>ANAC58    --------->YAB1  <---------ANAC46   --------->ZAT14    <---------MYB46(3)  ------>ZmHOX2a(1)   aagaaatgtctgatctctaatcttcatccacatcttctgtgaagtcttcaatcacttcagccctattagattgtttgttcaacgagcgcatctcctctat  5102300  Previous    Next  AGI:  At3g15140.1    Description:  exonuclease family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO39332.1); contains InterPro domain Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520) Range:  from: 5099539    to: 5101788    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g15150.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO39331.1); contains domain PTHR21330 (PTHR21330); contains domain SSF57850 (SSF57850); contains domain PTHR21330:SF1 (PTHR21330:SF1) Range:  from: 5101992    to: 5104147    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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